Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 3-278 |
| Cow position: | chr19:46445920-46446193 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 60 |
| Conread position: | 3-455 |
| Cow position: | chr19:35382753-35382273 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 62 |
| Conread position: | 8-385 |
| Cow position: | chr19:748854-748474 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-492 |
| Cow position: | chr19:33905476-33905970 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 81, 149 |
| Conread position: | 8-559 |
| Cow position: | chr19:1584871-1585434 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 371 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-561 |
| Cow position: | chr19:16318204-16317639 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-562 |
| Cow position: | chr19:47041980-47041416 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 383 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 27 |
| Conread position: | 8-590 |
| Cow position: | chr19:52149129-52148548 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 381 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 55 |
| Conread position: | 8-722 |
| Cow position: | chr19:13063837-13064596 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 8-730 |
| Cow position: | chr19:15445455-15444695 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 483 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-788 |
| Cow position: | chr19:7490506-7491323 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 503 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 8-844 |
| Cow position: | chr19:40834856-40833987 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 524 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 27 |
| Conread position: | 8-881 |
| Cow position: | chr19:206910-207824 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 572 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 8-881 |
| Cow position: | chr19:12775528-12776433 (view UCSC Genome Browser custom track) |
| Alignm length: | 919 |
| Alignm identity: | 566 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-893 |
| Cow position: | chr19:7481532-7480600 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-893 |
| Cow position: | chr19:20610737-20611669 (view UCSC Genome Browser custom track) |
| Alignm length: | 939 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr19:28595790-28596711 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 579 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-903 |
| Cow position: | chr19:38559879-38558941 (view UCSC Genome Browser custom track) |
| Alignm length: | 951 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 63 |
| Conread position: | 8-905 |
| Cow position: | chr19:5731918-5732844 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 560 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 8-921 |
| Cow position: | chr19:40750-41697 (view UCSC Genome Browser custom track) |
| Alignm length: | 971 |
| Alignm identity: | 591 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 126, 62 |
| Conread position: | 8-921 |
| Cow position: | chr19:33875821-33876780 (view UCSC Genome Browser custom track) |
| Alignm length: | 967 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 55 |
| Conread position: | 8-933 |
| Cow position: | chr19:39183134-39182163 (view UCSC Genome Browser custom track) |
| Alignm length: | 986 |
| Alignm identity: | 624 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 15-410 |
| Cow position: | chr19:3088908-3088504 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 16-840 |
| Cow position: | chr19:165709-164851 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 536 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 108, 99 |
| Conread position: | 19-400 |
| Cow position: | chr19:44004715-44005114 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 77, 127 |
| Conread position: | 19-440 |
| Cow position: | chr19:2736205-2736635 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 65, 57 |
| Conread position: | 33-407 |
| Cow position: | chr19:39345508-39345128 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 36-719 |
| Cow position: | chr19:20107164-20107895 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 429 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 36-926 |
| Cow position: | chr19:47094655-47095568 (view UCSC Genome Browser custom track) |
| Alignm length: | 935 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 64-466 |
| Cow position: | chr19:40068829-40068393 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 297 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 20, 103 |
| Conread position: | 64-943 |
| Cow position: | chr19:18359836-18358961 (view UCSC Genome Browser custom track) |
| Alignm length: | 918 |
| Alignm identity: | 575 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 92-475 |
| Cow position: | chr19:475008-474600 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 32, 291 |
| Conread position: | 95-893 |
| Cow position: | chr19:40017080-40016250 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 516 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 133-775 |
| Cow position: | chr19:890663-889983 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 437 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 135-476 |
| Cow position: | chr19:22390922-22390559 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 245 |
| Conread position: | 135-933 |
| Cow position: | chr19:30517341-30518183 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 513 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 151-881 |
| Cow position: | chr19:2270744-2269977 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 479 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 158-415 |
| Cow position: | chr19:48333523-48333784 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 158-555 |
| Cow position: | chr19:28741320-28740924 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 122 |
| Conread position: | 177-475 |
| Cow position: | chr19:36418580-36418886 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 230-541 |
| Cow position: | chr19:29970671-29970368 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 124, 18 |
| Conread position: | 231-898 |
| Cow position: | chr19:44587782-44588456 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 436 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 73, 97 |
| Conread position: | 242-868 |
| Cow position: | chr19:45150205-45149560 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 414 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 125 |
| Conread position: | 261-893 |
| Cow position: | chr19:55164986-55164322 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 419 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 111 |
| Conread position: | 301-906 |
| Cow position: | chr19:27209679-27209058 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 410 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 111, 61 |
| Conread position: | 317-842 |
| Cow position: | chr19:4552370-4551842 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 348 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 61, 159 |
| Conread position: | 447-790 |
| Cow position: | chr19:48875334-48875695 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 328 |
| Conread position: | 492-946 |
| Cow position: | chr19:47099786-47100249 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 496-946 |
| Cow position: | chr19:17803625-17804089 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 595-946 |
| Cow position: | chr19:6173505-6173155 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 618-941 |
| Cow position: | chr19:24672443-24672111 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 621-788 |
| Cow position: | chr19:15871579-15871412 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 621-894 |
| Cow position: | chr19:1548781-1549058 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 208, 194 |
| Conread position: | 623-943 |
| Cow position: | chr19:33351442-33351130 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 632-790 |
| Cow position: | chr19:9115651-9115492 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 643-942 |
| Cow position: | chr19:33641154-33641452 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 162, 34 |
| Conread position: | 690-924 |
| Cow position: | chr19:32371339-32371099 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 219 |
| Conread position: | 692-930 |
| Cow position: | chr19:13300184-13299944 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 135, 30 |
Show alignments to all cow chromosomes.