Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 2-790 |
| Cow position: | chr20:23899749-23900550 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 2-828 |
| Cow position: | chr20:34459943-34459084 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 538 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 84, 66 |
| Conread position: | 8-346 |
| Cow position: | chr20:17659376-17659029 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 72 |
| Conread position: | 8-381 |
| Cow position: | chr20:23801258-23801641 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-410 |
| Cow position: | chr20:5537299-5537713 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 120, 68 |
| Conread position: | 8-410 |
| Cow position: | chr20:10922552-10922137 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-411 |
| Cow position: | chr20:752514-752933 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr20:18355597-18356090 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 327 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr20:30578258-30578747 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 326 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-788 |
| Cow position: | chr20:28163414-28164231 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 506 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 8-881 |
| Cow position: | chr20:8971512-8970606 (view UCSC Genome Browser custom track) |
| Alignm length: | 922 |
| Alignm identity: | 567 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 155, 38 |
| Conread position: | 8-881 |
| Cow position: | chr20:12436027-12435112 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 572 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 119, 68 |
| Conread position: | 8-881 |
| Cow position: | chr20:23805510-23804593 (view UCSC Genome Browser custom track) |
| Alignm length: | 931 |
| Alignm identity: | 574 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-881 |
| Cow position: | chr20:28444980-28444060 (view UCSC Genome Browser custom track) |
| Alignm length: | 925 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 8-882 |
| Cow position: | chr20:870637-869726 (view UCSC Genome Browser custom track) |
| Alignm length: | 928 |
| Alignm identity: | 564 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 62, 82 |
| Conread position: | 8-893 |
| Cow position: | chr20:825149-826078 (view UCSC Genome Browser custom track) |
| Alignm length: | 946 |
| Alignm identity: | 584 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr20:19440285-19441206 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-893 |
| Cow position: | chr20:20440583-20439671 (view UCSC Genome Browser custom track) |
| Alignm length: | 935 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-894 |
| Cow position: | chr20:24541792-24542725 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-929 |
| Cow position: | chr20:23467297-23466313 (view UCSC Genome Browser custom track) |
| Alignm length: | 1001 |
| Alignm identity: | 625 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 14-881 |
| Cow position: | chr20:21718938-21719844 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 568 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 15-339 |
| Cow position: | chr20:25332561-25332232 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 53 |
| Conread position: | 15-869 |
| Cow position: | chr20:7598478-7597581 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 547 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 66, 142 |
| Conread position: | 16-730 |
| Cow position: | chr20:20185133-20185868 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 457 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 23-587 |
| Cow position: | chr20:3307236-3307793 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 361 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 23-893 |
| Cow position: | chr20:6136607-6135693 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 578 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 23-893 |
| Cow position: | chr20:16560160-16559234 (view UCSC Genome Browser custom track) |
| Alignm length: | 937 |
| Alignm identity: | 587 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 9, 13 |
| Conread position: | 29-921 |
| Cow position: | chr20:25846233-25845298 (view UCSC Genome Browser custom track) |
| Alignm length: | 947 |
| Alignm identity: | 578 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 35-893 |
| Cow position: | chr20:39233623-39234529 (view UCSC Genome Browser custom track) |
| Alignm length: | 921 |
| Alignm identity: | 580 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 351 |
| Conread position: | 38-398 |
| Cow position: | chr20:14851609-14851244 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 54-400 |
| Cow position: | chr20:15294380-15294742 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 92-893 |
| Cow position: | chr20:3809318-3808475 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 539 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 291 |
| Conread position: | 135-893 |
| Cow position: | chr20:30385749-30384947 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 485 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 712 |
| Conread position: | 137-411 |
| Cow position: | chr20:8200716-8201002 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 243 |
| Conread position: | 146-883 |
| Cow position: | chr20:38956650-38957428 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 488 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 62, 7 |
| Conread position: | 149-942 |
| Cow position: | chr20:924978-924169 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 518 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 120, 12 |
| Conread position: | 179-842 |
| Cow position: | chr20:35108644-35107941 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 437 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 199 |
| Conread position: | 207-562 |
| Cow position: | chr20:19205376-19205016 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 261-923 |
| Cow position: | chr20:30213823-30213162 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 430 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 53, 114 |
| Conread position: | 435-926 |
| Cow position: | chr20:3134518-3135026 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 326 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 595-946 |
| Cow position: | chr20:1534543-1534186 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 603-942 |
| Cow position: | chr20:7608595-7608937 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 223, 50 |
| Conread position: | 618-883 |
| Cow position: | chr20:28102453-28102724 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 618-894 |
| Cow position: | chr20:14872716-14872433 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 621-946 |
| Cow position: | chr20:8094698-8094370 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 169, 139 |
| Conread position: | 623-941 |
| Cow position: | chr20:16975289-16974971 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 164, 232 |
| Conread position: | 668-944 |
| Cow position: | chr20:2890516-2890233 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 704-930 |
| Cow position: | chr20:24494099-24494330 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 99 |
Show alignments to all cow chromosomes.