Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 1-554 |
| Cow position: | chr21:2459315-2459863 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 122 |
| Conread position: | 2-297 |
| Cow position: | chr21:36981122-36981414 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 2-407 |
| Cow position: | chr21:36978430-36978021 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 91, 65 |
| Conread position: | 5-353 |
| Cow position: | chr21:10569172-10569530 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 7, 66 |
| Conread position: | 8-246 |
| Cow position: | chr21:7163502-7163255 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-294 |
| Cow position: | chr21:33318024-33317727 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 8-297 |
| Cow position: | chr21:11291168-11291468 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 8-348 |
| Cow position: | chr21:45117149-45117487 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 116, 59 |
| Conread position: | 8-359 |
| Cow position: | chr21:46969202-46968841 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 126, 216 |
| Conread position: | 8-363 |
| Cow position: | chr21:21917962-21918328 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-410 |
| Cow position: | chr21:7154813-7155226 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 8-410 |
| Cow position: | chr21:35781370-35780970 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 128, 38 |
| Conread position: | 8-464 |
| Cow position: | chr21:4481775-4482257 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-464 |
| Cow position: | chr21:7063191-7062709 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-464 |
| Cow position: | chr21:17143155-17143638 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 8-473 |
| Cow position: | chr21:39225577-39225091 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr21:32397572-32397079 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-515 |
| Cow position: | chr21:24647305-24647818 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 8-541 |
| Cow position: | chr21:42960569-42960047 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 352 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 90, 55 |
| Conread position: | 8-789 |
| Cow position: | chr21:4252143-4251395 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 500 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 8-842 |
| Cow position: | chr21:37373705-37374567 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 8-881 |
| Cow position: | chr21:5019625-5020543 (view UCSC Genome Browser custom track) |
| Alignm length: | 935 |
| Alignm identity: | 571 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-881 |
| Cow position: | chr21:6966981-6966075 (view UCSC Genome Browser custom track) |
| Alignm length: | 923 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 59 |
| Conread position: | 8-885 |
| Cow position: | chr21:30596610-30595688 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 571 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-893 |
| Cow position: | chr21:2513330-2514260 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 8-893 |
| Cow position: | chr21:27149077-27148144 (view UCSC Genome Browser custom track) |
| Alignm length: | 943 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr21:27621018-27620092 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 587 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-893 |
| Cow position: | chr21:36375467-36376398 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-893 |
| Cow position: | chr21:41797244-41796313 (view UCSC Genome Browser custom track) |
| Alignm length: | 939 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-921 |
| Cow position: | chr21:47647815-47648777 (view UCSC Genome Browser custom track) |
| Alignm length: | 978 |
| Alignm identity: | 604 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 116, 148 |
| Conread position: | 8-933 |
| Cow position: | chr21:1195024-1195988 (view UCSC Genome Browser custom track) |
| Alignm length: | 978 |
| Alignm identity: | 601 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 11-294 |
| Cow position: | chr21:27068479-27068184 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 57 |
| Conread position: | 14-477 |
| Cow position: | chr21:40082050-40082508 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 15-391 |
| Cow position: | chr21:10285653-10286033 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 193, 61 |
| Conread position: | 15-926 |
| Cow position: | chr21:2418692-2419639 (view UCSC Genome Browser custom track) |
| Alignm length: | 962 |
| Alignm identity: | 569 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 53 |
| Conread position: | 16-461 |
| Cow position: | chr21:38019722-38020188 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 17-942 |
| Cow position: | chr21:79518-78572 (view UCSC Genome Browser custom track) |
| Alignm length: | 970 |
| Alignm identity: | 594 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 18-303 |
| Cow position: | chr21:22943105-22943402 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 23-941 |
| Cow position: | chr21:32895703-32894765 (view UCSC Genome Browser custom track) |
| Alignm length: | 961 |
| Alignm identity: | 586 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 37-921 |
| Cow position: | chr21:13112882-13111961 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 587 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 42-893 |
| Cow position: | chr21:19352350-19351453 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 56-359 |
| Cow position: | chr21:38012660-38012969 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 56-885 |
| Cow position: | chr21:33256082-33256958 (view UCSC Genome Browser custom track) |
| Alignm length: | 886 |
| Alignm identity: | 548 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 57-475 |
| Cow position: | chr21:15398448-15398004 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 57-921 |
| Cow position: | chr21:148675-149584 (view UCSC Genome Browser custom track) |
| Alignm length: | 918 |
| Alignm identity: | 567 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 88-921 |
| Cow position: | chr21:42916353-42917230 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 547 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 117-790 |
| Cow position: | chr21:12910730-12911441 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 135-400 |
| Cow position: | chr21:5544040-5543763 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 245 |
| Conread position: | 135-790 |
| Cow position: | chr21:30872374-30873046 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 136-562 |
| Cow position: | chr21:21786285-21786708 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 7 |
| Conread position: | 138-562 |
| Cow position: | chr21:29726805-29727229 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 94, 23 |
| Conread position: | 148-474 |
| Cow position: | chr21:12097168-12096861 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 149-870 |
| Cow position: | chr21:4406542-4407259 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 474 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 158-410 |
| Cow position: | chr21:25521663-25521403 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 160-475 |
| Cow position: | chr21:47976644-47976979 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 218 |
| Conread position: | 207-620 |
| Cow position: | chr21:3922947-3923388 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 335 |
| Conread position: | 213-893 |
| Cow position: | chr21:4899276-4898556 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 452 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 317 |
| Conread position: | 225-465 |
| Cow position: | chr21:28892861-28893111 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 88, 80 |
| Conread position: | 230-945 |
| Cow position: | chr21:25604744-25604022 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 457 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 278-893 |
| Cow position: | chr21:39428161-39428810 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 410 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 244 |
| Conread position: | 311-881 |
| Cow position: | chr21:33317574-33316969 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 375 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 226 |
| Conread position: | 327-893 |
| Cow position: | chr21:11508747-11509349 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 501 |
| Conread position: | 595-929 |
| Cow position: | chr21:12099632-12099977 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 106 |
| Conread position: | 619-827 |
| Cow position: | chr21:436527-436737 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 182 |
| Conread position: | 620-934 |
| Cow position: | chr21:39738390-39738071 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 161, 32 |
| Conread position: | 621-946 |
| Cow position: | chr21:21623411-21623741 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 208, 113 |
| Conread position: | 621-946 |
| Cow position: | chr21:28056446-28056767 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 621-946 |
| Cow position: | chr21:28729770-28730099 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 196, 97 |
| Conread position: | 622-937 |
| Cow position: | chr21:11077822-11077503 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 108, 55 |
| Conread position: | 623-945 |
| Cow position: | chr21:11460221-11460542 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 626-926 |
| Cow position: | chr21:24223160-24223462 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 109, 56 |
| Conread position: | 626-945 |
| Cow position: | chr21:30162073-30161769 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 214, 34 |
| Conread position: | 626-945 |
| Cow position: | chr21:30650033-30649714 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 104, 22 |
Show alignments to all cow chromosomes.