Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 2-407 |
| Cow position: | chr23:16612499-16612091 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 2-788 |
| Cow position: | chr23:8705156-8705980 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 519 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 2-893 |
| Cow position: | chr23:2321649-2320717 (view UCSC Genome Browser custom track) |
| Alignm length: | 944 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 3-464 |
| Cow position: | chr23:20178269-20177801 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 8-320 |
| Cow position: | chr23:41142645-41142965 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-410 |
| Cow position: | chr23:8289723-8290139 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 8-410 |
| Cow position: | chr23:37200215-37199801 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-464 |
| Cow position: | chr23:36029081-36028599 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 320 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 8-475 |
| Cow position: | chr23:943277-943770 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr23:36097119-36097612 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-788 |
| Cow position: | chr23:19491857-19492678 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 510 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-788 |
| Cow position: | chr23:22169185-22170009 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 515 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 8-823 |
| Cow position: | chr23:3708707-3709556 (view UCSC Genome Browser custom track) |
| Alignm length: | 864 |
| Alignm identity: | 539 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 8-842 |
| Cow position: | chr23:22145001-22144133 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 529 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 8-843 |
| Cow position: | chr23:4890993-4891873 (view UCSC Genome Browser custom track) |
| Alignm length: | 888 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 8-881 |
| Cow position: | chr23:15527889-15528804 (view UCSC Genome Browser custom track) |
| Alignm length: | 929 |
| Alignm identity: | 571 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-889 |
| Cow position: | chr23:14960648-14959727 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 575 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-893 |
| Cow position: | chr23:609019-609957 (view UCSC Genome Browser custom track) |
| Alignm length: | 949 |
| Alignm identity: | 588 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 67, 238 |
| Conread position: | 8-893 |
| Cow position: | chr23:21773613-21772681 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-893 |
| Cow position: | chr23:25350656-25351588 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 11-411 |
| Cow position: | chr23:15568621-15568204 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 11-788 |
| Cow position: | chr23:4080444-4081264 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 11-893 |
| Cow position: | chr23:28221012-28221929 (view UCSC Genome Browser custom track) |
| Alignm length: | 927 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 65 |
| Conread position: | 16-868 |
| Cow position: | chr23:14264657-14265552 (view UCSC Genome Browser custom track) |
| Alignm length: | 903 |
| Alignm identity: | 548 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 27-463 |
| Cow position: | chr23:14572703-14572256 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 60, 125 |
| Conread position: | 42-788 |
| Cow position: | chr23:19316818-19317607 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 70-464 |
| Cow position: | chr23:22989515-22989099 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 226 |
| Conread position: | 127-893 |
| Cow position: | chr23:21009185-21008376 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 522 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 253 |
| Conread position: | 135-477 |
| Cow position: | chr23:19621411-19621051 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 135-893 |
| Cow position: | chr23:3285191-3285987 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 504 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 143-946 |
| Cow position: | chr23:15350668-15351487 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 10 |
| Conread position: | 168-893 |
| Cow position: | chr23:24119023-24119783 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 473 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 174-886 |
| Cow position: | chr23:11330927-11331625 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 458 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 175-360 |
| Cow position: | chr23:14264365-14264557 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 175-788 |
| Cow position: | chr23:1249058-1248408 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 404 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 203 |
| Conread position: | 207-783 |
| Cow position: | chr23:2368326-2368938 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 375 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 321 |
| Conread position: | 230-862 |
| Cow position: | chr23:38721108-38721742 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 422 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 255-459 |
| Cow position: | chr23:18942194-18941979 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 423-936 |
| Cow position: | chr23:10131652-10131125 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 341 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 487-926 |
| Cow position: | chr23:11386243-11385783 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 185 |
| Conread position: | 601-843 |
| Cow position: | chr23:9607836-9608076 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 216, 5 |
| Conread position: | 618-894 |
| Cow position: | chr23:30803888-30803616 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 187, 57 |
| Conread position: | 618-923 |
| Cow position: | chr23:12829447-12829134 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 99, 149 |
| Conread position: | 626-868 |
| Cow position: | chr23:27146335-27146088 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 629-924 |
| Cow position: | chr23:7962189-7961896 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 160, 71 |
| Conread position: | 679-946 |
| Cow position: | chr23:34589581-34589319 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 138, 56 |
Show alignments to all cow chromosomes.