Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 1-400 |
| Cow position: | chr24:2711812-2712216 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 92, 41 |
| Conread position: | 1-400 |
| Cow position: | chr24:13114981-13115386 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 83, 128 |
| Conread position: | 2-407 |
| Cow position: | chr24:38004557-38004141 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 84, 61 |
| Conread position: | 2-921 |
| Cow position: | chr24:12333337-12332357 (view UCSC Genome Browser custom track) |
| Alignm length: | 989 |
| Alignm identity: | 605 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 3-410 |
| Cow position: | chr24:41231000-41231406 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 154 |
| Conread position: | 8-297 |
| Cow position: | chr24:3849958-3850259 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-320 |
| Cow position: | chr24:14350390-14350714 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-381 |
| Cow position: | chr24:19884684-19885070 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-400 |
| Cow position: | chr24:23093653-23093246 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-400 |
| Cow position: | chr24:23096391-23095984 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-407 |
| Cow position: | chr24:12088594-12089001 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 8-410 |
| Cow position: | chr24:12126702-12126282 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 113, 60 |
| Conread position: | 8-410 |
| Cow position: | chr24:16559913-16559496 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 8-447 |
| Cow position: | chr24:13234630-13235093 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-476 |
| Cow position: | chr24:21248557-21248063 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 325 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-545 |
| Cow position: | chr24:14195468-14194920 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 367 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-783 |
| Cow position: | chr24:208611-207798 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-788 |
| Cow position: | chr24:7063956-7064778 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-830 |
| Cow position: | chr24:6411870-6412729 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 551 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-836 |
| Cow position: | chr24:6440143-6441016 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 542 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-836 |
| Cow position: | chr24:12698627-12697753 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-881 |
| Cow position: | chr24:20366756-20367676 (view UCSC Genome Browser custom track) |
| Alignm length: | 928 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-883 |
| Cow position: | chr24:41004881-41005790 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 565 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 116, 60 |
| Conread position: | 8-893 |
| Cow position: | chr24:17323083-17324015 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-893 |
| Cow position: | chr24:19689187-19688258 (view UCSC Genome Browser custom track) |
| Alignm length: | 941 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-910 |
| Cow position: | chr24:8606737-8607668 (view UCSC Genome Browser custom track) |
| Alignm length: | 963 |
| Alignm identity: | 599 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-921 |
| Cow position: | chr24:13190562-13191511 (view UCSC Genome Browser custom track) |
| Alignm length: | 965 |
| Alignm identity: | 588 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-933 |
| Cow position: | chr24:14759271-14760256 (view UCSC Genome Browser custom track) |
| Alignm length: | 992 |
| Alignm identity: | 608 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 11-893 |
| Cow position: | chr24:16082094-16081165 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 45 |
| Conread position: | 11-893 |
| Cow position: | chr24:40551020-40551946 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 12-395 |
| Cow position: | chr24:25009880-25009490 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 109, 64 |
| Conread position: | 38-893 |
| Cow position: | chr24:6963269-6964172 (view UCSC Genome Browser custom track) |
| Alignm length: | 914 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 40-459 |
| Cow position: | chr24:17410861-17411288 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 65-550 |
| Cow position: | chr24:25291302-25291782 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 318 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 69-475 |
| Cow position: | chr24:25371385-25371818 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 18, 316 |
| Conread position: | 135-411 |
| Cow position: | chr24:34373112-34373400 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 22, 245 |
| Conread position: | 137-527 |
| Cow position: | chr24:19890457-19890844 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 165, 16 |
| Conread position: | 155-458 |
| Cow position: | chr24:12466782-12467104 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 157-392 |
| Cow position: | chr24:27960304-27960056 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 158-480 |
| Cow position: | chr24:36479351-36479008 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 169 |
| Conread position: | 168-464 |
| Cow position: | chr24:43906009-43906325 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 210 |
| Conread position: | 171-773 |
| Cow position: | chr24:1295699-1295061 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 407 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 184-744 |
| Cow position: | chr24:17038887-17039440 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 313-893 |
| Cow position: | chr24:14352058-14352673 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 380 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 353-841 |
| Cow position: | chr24:37223038-37222549 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 125 |
| Conread position: | 595-923 |
| Cow position: | chr24:32363321-32362981 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 27, 221 |
| Conread position: | 621-926 |
| Cow position: | chr24:44931979-44931682 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 126, 79 |
| Conread position: | 622-925 |
| Cow position: | chr24:33936975-33937284 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 207, 254 |
| Conread position: | 626-947 |
| Cow position: | chr24:27586827-27587153 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 205 |
Show alignments to all cow chromosomes.