Cow genome map

Conread name: Ss1.1-Pig4-TMW8053L10.5

Conread position: 1-314
Cow position: chr29:5340954-5340637 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 207
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 123, 67

Conread position: 1-466
Cow position: chr29:11681020-11681481 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 290
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 133, 225

Conread position: 1-788
Cow position: chr29:33561076-33560270 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 504
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 69, 29

Conread position: 3-881
Cow position: chr29:13584531-13585450 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 29

Conread position: 5-783
Cow position: chr29:16346516-16347338 (view UCSC Genome Browser custom track)
Alignm length: 828
Alignm identity: 513
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 7, 66

Conread position: 5-881
Cow position: chr29:39077401-39076484 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 72

Conread position: 8-328
Cow position: chr29:33141811-33142138 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 227
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 109, 55

Conread position: 8-330
Cow position: chr29:15260675-15260340 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 24, 28

Conread position: 8-359
Cow position: chr29:10821602-10821238 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 241
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 78, 60

Conread position: 8-384
Cow position: chr29:19889894-19890276 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 247
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 78, 62

Conread position: 8-410
Cow position: chr29:4518219-4518629 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 262
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 78, 62

Conread position: 8-410
Cow position: chr29:40611551-40611132 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 266
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 71

Conread position: 8-464
Cow position: chr29:530082-529603 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 309
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 116, 62

Conread position: 8-464
Cow position: chr29:13898980-13899462 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 320
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 24, 28

Conread position: 8-473
Cow position: chr29:2692767-2693252 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 316
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 116, 68

Conread position: 8-475
Cow position: chr29:667093-666600 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 323
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 28

Conread position: 8-475
Cow position: chr29:5785127-5785620 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 326
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 78, 60

Conread position: 8-475
Cow position: chr29:16689149-16689637 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 313
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 76, 55

Conread position: 8-743
Cow position: chr29:19656218-19656992 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 493
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 78, 60

Conread position: 8-843
Cow position: chr29:23979023-23979906 (view UCSC Genome Browser custom track)
Alignm length: 890
Alignm identity: 550
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 79, 62

Conread position: 8-843
Cow position: chr29:26162521-26161638 (view UCSC Genome Browser custom track)
Alignm length: 890
Alignm identity: 552
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 78, 60

Conread position: 8-843
Cow position: chr29:35274705-35273844 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 542
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 78, 60

Conread position: 8-881
Cow position: chr29:10645094-10644177 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 68

Conread position: 8-881
Cow position: chr29:28658055-28657133 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 534

Conread position: 8-881
Cow position: chr29:42256660-42255743 (view UCSC Genome Browser custom track)
Alignm length: 939
Alignm identity: 595
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 28

Conread position: 8-883
Cow position: chr29:6263683-6262771 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 576
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 116, 68

Conread position: 8-883
Cow position: chr29:21430538-21429622 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 62

Conread position: 8-893
Cow position: chr29:7846709-7847638 (view UCSC Genome Browser custom track)
Alignm length: 941
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr29:15967239-15966308 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr29:19525971-19525044 (view UCSC Genome Browser custom track)
Alignm length: 939
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr29:19620952-19620022 (view UCSC Genome Browser custom track)
Alignm length: 939
Alignm identity: 576
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 78, 56

Conread position: 8-893
Cow position: chr29:21226297-21227222 (view UCSC Genome Browser custom track)
Alignm length: 939
Alignm identity: 588
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr29:32514642-32515574 (view UCSC Genome Browser custom track)
Alignm length: 941
Alignm identity: 572
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 78, 60

Conread position: 8-893
Cow position: chr29:32557431-32556498 (view UCSC Genome Browser custom track)
Alignm length: 944
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr29:40293650-40294553 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-920
Cow position: chr29:408941-407990 (view UCSC Genome Browser custom track)
Alignm length: 963
Alignm identity: 585
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 116, 68

Conread position: 8-921
Cow position: chr29:2102160-2103122 (view UCSC Genome Browser custom track)
Alignm length: 972
Alignm identity: 593
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 24, 28

Conread position: 8-935
Cow position: chr29:2464556-2463582 (view UCSC Genome Browser custom track)
Alignm length: 992
Alignm identity: 619
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 78, 60

Conread position: 11-662
Cow position: chr29:15624385-15623690 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 446
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 76, 59

Conread position: 11-893
Cow position: chr29:31095269-31094339 (view UCSC Genome Browser custom track)
Alignm length: 939
Alignm identity: 577
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 21, 25

Conread position: 14-273
Cow position: chr29:9962728-9962994 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 71, 54

Conread position: 15-396
Cow position: chr29:17343071-17343471 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 259
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 53

Conread position: 15-400
Cow position: chr29:36595764-36595392 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 255
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 201, 55

Conread position: 15-410
Cow position: chr29:16171785-16171380 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 261
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 71, 53

Conread position: 15-476
Cow position: chr29:37043277-37042798 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 325
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 69, 61

Conread position: 15-828
Cow position: chr29:29703045-29702226 (view UCSC Genome Browser custom track)
Alignm length: 838
Alignm identity: 514
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 30, 63

Conread position: 15-881
Cow position: chr29:46134-45229 (view UCSC Genome Browser custom track)
Alignm length: 917
Alignm identity: 548
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 109, 61

Conread position: 20-946
Cow position: chr29:36627598-36628520 (view UCSC Genome Browser custom track)
Alignm length: 969
Alignm identity: 599
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 120, 50

Conread position: 22-843
Cow position: chr29:2839008-2838141 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 548
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 10, 14

Conread position: 31-785
Cow position: chr29:7656038-7655280 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 32

Conread position: 33-519
Cow position: chr29:9973041-9972545 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 317
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 17, 27

Conread position: 35-893
Cow position: chr29:31764383-31765286 (view UCSC Genome Browser custom track)
Alignm length: 919
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 343

Conread position: 36-464
Cow position: chr29:27977478-27977030 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 288
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 52, 34

Conread position: 37-464
Cow position: chr29:32893099-32893525 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 275
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 87, 33

Conread position: 80-381
Cow position: chr29:40500600-40500288 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 205
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 13

Conread position: 100-893
Cow position: chr29:1477859-1478697 (view UCSC Genome Browser custom track)
Alignm length: 848
Alignm identity: 527
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 24, 434

Conread position: 135-881
Cow position: chr29:5239838-5240629 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 513
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 25, 18

Conread position: 138-429
Cow position: chr29:39555167-39554867 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 144-769
Cow position: chr29:3563736-3564356 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 402
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 44, 13

Conread position: 171-945
Cow position: chr29:15931782-15931000 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 498
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 207, 70

Conread position: 178-843
Cow position: chr29:31749484-31748811 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 438
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 23, 16

Conread position: 206-384
Cow position: chr29:38757684-38757857 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 26

Conread position: 206-742
Cow position: chr29:34727183-34726660 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 360
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 26, 43

Conread position: 240-946
Cow position: chr29:22284621-22285355 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 468
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 29, 124

Conread position: 245-843
Cow position: chr29:30358685-30358078 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 409
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 62, 33

Conread position: 258-788
Cow position: chr29:40471241-40471802 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 352
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 56, 112

Conread position: 311-946
Cow position: chr29:18412629-18413276 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 407
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 109, 29

Conread position: 393-923
Cow position: chr29:33142176-33142705 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 352
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 59, 87

Conread position: 400-946
Cow position: chr29:34121750-34121206 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 322
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 32

Conread position: 610-943
Cow position: chr29:37626611-37626273 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 236
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 171, 41

Conread position: 612-945
Cow position: chr29:321455-321114 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 224
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 70

Conread position: 618-911
Cow position: chr29:20614455-20614753 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 195
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 112, 189

Conread position: 626-946
Cow position: chr29:39371366-39371688 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 191, 15

Conread position: 635-942
Cow position: chr29:5340104-5339795 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 210
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 90, 8

Conread position: 661-893
Cow position: chr29:34288441-34288205 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 168, 27

Show alignments to all cow chromosomes.