Cow genome map

Conread name: Ss1.1-Pig4-TMW8053L10.5

Conread position: 1-271
Cow position: chr4:39234850-39234569 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 186
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 60

Conread position: 1-434
Cow position: chr4:54636513-54636089 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 280
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 49, 34

Conread position: 1-462
Cow position: chr4:58456638-58456164 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 314
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 41

Conread position: 2-410
Cow position: chr4:41977608-41977194 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 267
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 84, 66

Conread position: 2-475
Cow position: chr4:16061309-16061807 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 326
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 85, 68

Conread position: 6-535
Cow position: chr4:25348444-25348980 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 353
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 78, 159

Conread position: 8-359
Cow position: chr4:35306770-35306416 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 233
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 116, 68

Conread position: 8-360
Cow position: chr4:17923922-17923557 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 235
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 79, 62

Conread position: 8-391
Cow position: chr4:59476522-59476909 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 255
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 133, 52

Conread position: 8-393
Cow position: chr4:6488330-6487935 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 259
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 116, 62

Conread position: 8-397
Cow position: chr4:41473804-41473403 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 273
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 28

Conread position: 8-406
Cow position: chr4:45765880-45765460 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 286
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 47, 39

Conread position: 8-410
Cow position: chr4:2350683-2350265 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 271
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 73, 60

Conread position: 8-411
Cow position: chr4:531917-532329 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 272
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 78, 60

Conread position: 8-411
Cow position: chr4:21573803-21574214 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 266
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 116, 68

Conread position: 8-411
Cow position: chr4:27335971-27336398 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 278
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 79, 62

Conread position: 8-411
Cow position: chr4:58622492-58622073 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 283
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 24, 28

Conread position: 8-431
Cow position: chr4:58812520-58812960 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 297
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 24, 28

Conread position: 8-458
Cow position: chr4:16640648-16641121 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 310
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 116, 68

Conread position: 8-458
Cow position: chr4:28175045-28174581 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 297
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 75, 51

Conread position: 8-464
Cow position: chr4:3355926-3355445 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 308
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 31, 63

Conread position: 8-501
Cow position: chr4:61985260-61984748 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 318
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 55, 34

Conread position: 8-783
Cow position: chr4:50871529-50870724 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 48

Conread position: 8-828
Cow position: chr4:63000178-63001032 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-843
Cow position: chr4:61241321-61242197 (view UCSC Genome Browser custom track)
Alignm length: 885
Alignm identity: 546
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 100, 68

Conread position: 8-881
Cow position: chr4:3127855-3128769 (view UCSC Genome Browser custom track)
Alignm length: 926
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 60

Conread position: 8-881
Cow position: chr4:4418085-4419000 (view UCSC Genome Browser custom track)
Alignm length: 934
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-881
Cow position: chr4:67382326-67383235 (view UCSC Genome Browser custom track)
Alignm length: 923
Alignm identity: 567
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 122, 68

Conread position: 8-883
Cow position: chr4:32214213-32215111 (view UCSC Genome Browser custom track)
Alignm length: 922
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 62

Conread position: 8-893
Cow position: chr4:605657-606570 (view UCSC Genome Browser custom track)
Alignm length: 936
Alignm identity: 580
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr4:1928585-1927670 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 68

Conread position: 8-893
Cow position: chr4:6267179-6266249 (view UCSC Genome Browser custom track)
Alignm length: 947
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr4:18336913-18335985 (view UCSC Genome Browser custom track)
Alignm length: 941
Alignm identity: 581
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 78, 60

Conread position: 8-893
Cow position: chr4:40216876-40217803 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 13

Conread position: 8-893
Cow position: chr4:41956800-41957726 (view UCSC Genome Browser custom track)
Alignm length: 933
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 226

Conread position: 8-893
Cow position: chr4:41960936-41961861 (view UCSC Genome Browser custom track)
Alignm length: 942
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 235

Conread position: 8-921
Cow position: chr4:25597449-25596491 (view UCSC Genome Browser custom track)
Alignm length: 968
Alignm identity: 590
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 116, 68

Conread position: 10-883
Cow position: chr4:29605438-29604517 (view UCSC Genome Browser custom track)
Alignm length: 932
Alignm identity: 588
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 26

Conread position: 11-595
Cow position: chr4:29033019-29033593 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 373
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 73, 57

Conread position: 11-893
Cow position: chr4:54811824-54810882 (view UCSC Genome Browser custom track)
Alignm length: 950
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 25

Conread position: 15-243
Cow position: chr4:18326997-18327234 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 72, 55

Conread position: 15-306
Cow position: chr4:39933412-39933707 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 201
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 105, 48

Conread position: 15-555
Cow position: chr4:12606835-12606283 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 347
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 55

Conread position: 15-881
Cow position: chr4:43317607-43316695 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 570
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 72, 55

Conread position: 16-410
Cow position: chr4:18815554-18815148 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 263
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 70, 52

Conread position: 16-881
Cow position: chr4:357936-358839 (view UCSC Genome Browser custom track)
Alignm length: 921
Alignm identity: 564
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 108, 37

Conread position: 18-411
Cow position: chr4:50807503-50807907 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 259
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 117, 39

Conread position: 23-396
Cow position: chr4:57986068-57986457 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 263
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 64, 47

Conread position: 29-465
Cow position: chr4:10542391-10541929 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 308
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 61, 41

Conread position: 37-410
Cow position: chr4:17539942-17539549 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 252
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 33

Conread position: 37-885
Cow position: chr4:1048189-1047305 (view UCSC Genome Browser custom track)
Alignm length: 903
Alignm identity: 555
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 50, 39

Conread position: 38-881
Cow position: chr4:4378460-4379338 (view UCSC Genome Browser custom track)
Alignm length: 895
Alignm identity: 548
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 86, 38

Conread position: 46-407
Cow position: chr4:60774654-60775017 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 239
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 89, 24

Conread position: 77-359
Cow position: chr4:59455215-59454933 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 64, 18

Conread position: 88-787
Cow position: chr4:13463926-13464667 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 460
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 36, 296

Conread position: 135-714
Cow position: chr4:51606609-51606003 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 390
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 11, 29

Conread position: 135-757
Cow position: chr4:62558400-62557743 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 409
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 22, 110

Conread position: 135-843
Cow position: chr4:38931537-38932273 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 467
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 72, 166

Conread position: 146-764
Cow position: chr4:30577906-30578559 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 408
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 62, 7

Conread position: 153-541
Cow position: chr4:18330817-18330419 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 269
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 55, 152

Conread position: 160-885
Cow position: chr4:44779001-44778233 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 472
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 48, 41

Conread position: 160-893
Cow position: chr4:47056235-47055461 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 491
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 218

Conread position: 167-786
Cow position: chr4:17834655-17833993 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 418
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 41, 9

Conread position: 177-562
Cow position: chr4:51958834-51959215 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 267
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 54, 31

Conread position: 179-930
Cow position: chr4:453001-453749 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 487
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 21, 174

Conread position: 190-868
Cow position: chr4:6613922-6613220 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 467
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 18, 99

Conread position: 208-828
Cow position: chr4:49768516-49769157 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 421
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 22, 80

Conread position: 257-472
Cow position: chr4:49825004-49825235 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 6

Conread position: 258-925
Cow position: chr4:29531162-29530458 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 449
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 39

Conread position: 503-930
Cow position: chr4:49533132-49533572 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 297
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 97, 18

Conread position: 565-930
Cow position: chr4:42400364-42399979 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 251
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 160

Conread position: 571-841
Cow position: chr4:27873579-27873310 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 181
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 206, 24

Conread position: 595-945
Cow position: chr4:44774177-44774535 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 227
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 27, 115

Conread position: 600-894
Cow position: chr4:8818444-8818733 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 198
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 13, 44

Conread position: 618-930
Cow position: chr4:384357-384661 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 201
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 16

Conread position: 618-936
Cow position: chr4:49419369-49419047 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 172, 25

Conread position: 622-881
Cow position: chr4:38909200-38909454 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 175
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 95, 142

Conread position: 622-881
Cow position: chr4:57987434-57987699 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 173
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 195, 238

Conread position: 622-929
Cow position: chr4:18813520-18813207 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 199
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 195, 254

Conread position: 622-930
Cow position: chr4:45654482-45654168 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 208
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 137, 142

Conread position: 622-945
Cow position: chr4:26673271-26672949 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 69, 38

Conread position: 624-946
Cow position: chr4:46456756-46457078 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 213
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 175, 22

Conread position: 626-894
Cow position: chr4:185841-186109 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 177
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 176, 187

Conread position: 643-943
Cow position: chr4:43226382-43226683 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 202
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 186, 87

Conread position: 643-945
Cow position: chr4:43692440-43692144 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 147, 87

Conread position: 666-946
Cow position: chr4:25984420-25984705 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 11, 68

Conread position: 676-925
Cow position: chr4:47797842-47798097 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 120, 57

Show alignments to all cow chromosomes.