Cow genome map

Conread name: Ss1.1-Pig4-TMW8053L10.5

Conread position: 1-400
Cow position: chr5:72739536-72739131 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 284
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 83, 67

Conread position: 1-552
Cow position: chr5:11418910-11418362 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 359
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 81, 55

Conread position: 2-410
Cow position: chr5:48226442-48226022 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 266
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 81, 66

Conread position: 2-465
Cow position: chr5:23668023-23667533 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 317
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 85, 61

Conread position: 2-536
Cow position: chr5:52612233-52611708 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 340
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 113, 66

Conread position: 2-783
Cow position: chr5:42043045-42043844 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 494
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 84, 66

Conread position: 2-896
Cow position: chr5:38661461-38662400 (view UCSC Genome Browser custom track)
Alignm length: 948
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 34

Conread position: 3-475
Cow position: chr5:71622171-71621673 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 335
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 29, 33

Conread position: 5-896
Cow position: chr5:46736147-46735208 (view UCSC Genome Browser custom track)
Alignm length: 952
Alignm identity: 595
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 72

Conread position: 6-943
Cow position: chr5:63091664-63092620 (view UCSC Genome Browser custom track)
Alignm length: 978
Alignm identity: 573
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 83, 47

Conread position: 8-297
Cow position: chr5:58244684-58244386 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 197
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 116, 60

Conread position: 8-319
Cow position: chr5:34583770-34584094 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 28

Conread position: 8-320
Cow position: chr5:12730576-12730251 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 212
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 78, 60

Conread position: 8-335
Cow position: chr5:6152755-6152417 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 62

Conread position: 8-339
Cow position: chr5:11922992-11922648 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 230
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 24, 28

Conread position: 8-359
Cow position: chr5:29031407-29031771 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 245
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 24, 28

Conread position: 8-410
Cow position: chr5:50605201-50604780 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 275
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 78, 62

Conread position: 8-410
Cow position: chr5:73486787-73486371 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 273
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 79, 62

Conread position: 8-465
Cow position: chr5:10097900-10097436 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 306
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 78, 46

Conread position: 8-475
Cow position: chr5:46003503-46003023 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 293
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 60

Conread position: 8-524
Cow position: chr5:50390970-50390442 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 324
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 24, 28

Conread position: 8-555
Cow position: chr5:10514140-10513579 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 380
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 24, 28

Conread position: 8-783
Cow position: chr5:27196946-27196128 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 62

Conread position: 8-788
Cow position: chr5:18120339-18119522 (view UCSC Genome Browser custom track)
Alignm length: 829
Alignm identity: 518
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 24, 28

Conread position: 8-788
Cow position: chr5:64779870-64779051 (view UCSC Genome Browser custom track)
Alignm length: 826
Alignm identity: 512
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 78, 60

Conread position: 8-836
Cow position: chr5:44710246-44709375 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 68

Conread position: 8-881
Cow position: chr5:3788361-3789282 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 8-881
Cow position: chr5:10920981-10921899 (view UCSC Genome Browser custom track)
Alignm length: 933
Alignm identity: 569
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 79, 60

Conread position: 8-881
Cow position: chr5:31121065-31120152 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 558
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 140, 68

Conread position: 8-881
Cow position: chr5:49222362-49221439 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 62

Conread position: 8-883
Cow position: chr5:26077066-26076144 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-883
Cow position: chr5:42506896-42507815 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 565
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 24, 28

Conread position: 8-885
Cow position: chr5:5925827-5924909 (view UCSC Genome Browser custom track)
Alignm length: 931
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-893
Cow position: chr5:5105362-5106289 (view UCSC Genome Browser custom track)
Alignm length: 939
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr5:6586324-6585388 (view UCSC Genome Browser custom track)
Alignm length: 948
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 68

Conread position: 8-893
Cow position: chr5:23958190-23957261 (view UCSC Genome Browser custom track)
Alignm length: 940
Alignm identity: 590
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr5:45180956-45180022 (view UCSC Genome Browser custom track)
Alignm length: 947
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 68

Conread position: 8-893
Cow position: chr5:51167165-51166244 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 48

Conread position: 8-893
Cow position: chr5:59145507-59146443 (view UCSC Genome Browser custom track)
Alignm length: 947
Alignm identity: 595
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-921
Cow position: chr5:51745367-51746318 (view UCSC Genome Browser custom track)
Alignm length: 974
Alignm identity: 601
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 113, 60

Conread position: 9-475
Cow position: chr5:20567640-20568107 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 322
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 75, 14

Conread position: 9-926
Cow position: chr5:48545509-48546432 (view UCSC Genome Browser custom track)
Alignm length: 961
Alignm identity: 596
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 68

Conread position: 11-359
Cow position: chr5:58190617-58190257 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 235
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 75, 57

Conread position: 11-397
Cow position: chr5:46791988-46792390 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 266
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 21, 25

Conread position: 14-400
Cow position: chr5:53943977-53944373 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 257
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 19, 56

Conread position: 15-297
Cow position: chr5:46666148-46666443 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 15-409
Cow position: chr5:25902319-25901918 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 274
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 72, 52

Conread position: 15-410
Cow position: chr5:49131351-49131758 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 269
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 69, 50

Conread position: 15-464
Cow position: chr5:47341865-47342329 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 301
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 106, 141

Conread position: 15-881
Cow position: chr5:18249201-18250107 (view UCSC Genome Browser custom track)
Alignm length: 918
Alignm identity: 568
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 71, 53

Conread position: 16-415
Cow position: chr5:27550318-27549902 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 269
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 70, 52

Conread position: 17-357
Cow position: chr5:26569591-26569234 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 228
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 17-871
Cow position: chr5:60733980-60734825 (view UCSC Genome Browser custom track)
Alignm length: 890
Alignm identity: 558
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 106, 25

Conread position: 19-560
Cow position: chr5:72397334-72397882 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 354
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 195, 23

Conread position: 23-893
Cow position: chr5:18559248-18558337 (view UCSC Genome Browser custom track)
Alignm length: 932
Alignm identity: 578
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 101, 48

Conread position: 26-817
Cow position: chr5:32364939-32365713 (view UCSC Genome Browser custom track)
Alignm length: 815
Alignm identity: 498
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 7

Conread position: 38-921
Cow position: chr5:54786944-54786014 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 584
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 39

Conread position: 39-848
Cow position: chr5:59278311-59279157 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 524
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 51, 31

Conread position: 60-411
Cow position: chr5:58142051-58141690 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 10

Conread position: 69-893
Cow position: chr5:30156552-30157425 (view UCSC Genome Browser custom track)
Alignm length: 881
Alignm identity: 546
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 18, 316

Conread position: 70-783
Cow position: chr5:68585106-68585824 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 455
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 62, 33

Conread position: 135-938
Cow position: chr5:37734638-37735487 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 533
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 161

Conread position: 149-410
Cow position: chr5:32955383-32955114 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 67, 14

Conread position: 149-930
Cow position: chr5:55833562-55832731 (view UCSC Genome Browser custom track)
Alignm length: 845
Alignm identity: 537
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 59, 12

Conread position: 160-842
Cow position: chr5:57337117-57336400 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 441
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 82

Conread position: 161-411
Cow position: chr5:50688105-50688365 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 176
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 47, 217

Conread position: 168-893
Cow position: chr5:444010-443244 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 484
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 209

Conread position: 175-893
Cow position: chr5:46778828-46779581 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 481
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 33, 68

Conread position: 192-474
Cow position: chr5:32775136-32775439 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 203
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 194-788
Cow position: chr5:29673579-29674178 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 400
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 16, 116

Conread position: 202-879
Cow position: chr5:52823871-52823155 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 460
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 174

Conread position: 218-936
Cow position: chr5:56960917-56961668 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 470
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 55, 23

Conread position: 231-541
Cow position: chr5:20553054-20552732 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 155, 24

Conread position: 241-541
Cow position: chr5:21118207-21118490 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 199
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 207, 145

Conread position: 278-730
Cow position: chr5:74475668-74476133 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 300
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 179

Conread position: 284-555
Cow position: chr5:68256116-68255844 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 94, 196

Conread position: 309-926
Cow position: chr5:42003127-42003734 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 387
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 76, 66

Conread position: 311-886
Cow position: chr5:48025727-48026329 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 381
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 72, 170

Conread position: 400-929
Cow position: chr5:7068246-7068786 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 346
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 78

Conread position: 425-941
Cow position: chr5:27481842-27482359 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 345
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 22, 56

Conread position: 550-911
Cow position: chr5:22830038-22829676 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 244
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 22, 104

Conread position: 564-881
Cow position: chr5:28569379-28569699 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 223
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 121

Conread position: 568-881
Cow position: chr5:51942381-51942703 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 5, 30

Conread position: 568-881
Cow position: chr5:51947334-51947656 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 5, 30

Conread position: 588-933
Cow position: chr5:51068965-51069313 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 236
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 11

Conread position: 595-933
Cow position: chr5:41229288-41228941 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 223
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 27, 92

Conread position: 618-941
Cow position: chr5:24239899-24240223 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 211
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 134, 87

Conread position: 628-945
Cow position: chr5:14728322-14727994 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 217
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 83, 32

Conread position: 628-945
Cow position: chr5:41738472-41738782 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 207
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 201, 24

Conread position: 656-946
Cow position: chr5:50166342-50166632 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 193
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 132, 73

Conread position: 679-922
Cow position: chr5:70645333-70645081 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 170
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 7

Conread position: 702-946
Cow position: chr5:44272579-44272819 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 79, 101

Show alignments to all cow chromosomes.