Cow genome map

Conread name: Ss1.1-Pig4-TMW8053L10.5

Conread position: 1-151
Cow position: chr6:59017040-59016887 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 64

Conread position: 1-941
Cow position: chr6:7161084-7162017 (view UCSC Genome Browser custom track)
Alignm length: 971
Alignm identity: 594
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 134, 55

Conread position: 2-384
Cow position: chr6:66547727-66548121 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 248
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 61

Conread position: 3-340
Cow position: chr6:60391305-60390968 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 230
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 105, 153

Conread position: 7-407
Cow position: chr6:51910358-51910761 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 257
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 60, 113

Conread position: 8-259
Cow position: chr6:67552757-67553015 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 176
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 78, 60

Conread position: 8-322
Cow position: chr6:704489-704817 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 213
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 72, 167

Conread position: 8-347
Cow position: chr6:30272615-30272263 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 228
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 78, 60

Conread position: 8-366
Cow position: chr6:51091636-51092014 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 245
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 78, 60

Conread position: 8-375
Cow position: chr6:2556920-2557304 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 249
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 24, 28

Conread position: 8-409
Cow position: chr6:40864753-40864344 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 265
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 116, 60

Conread position: 8-410
Cow position: chr6:50486522-50486104 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 276
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 78, 60

Conread position: 8-410
Cow position: chr6:51716818-51717236 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 273
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 74, 149

Conread position: 8-410
Cow position: chr6:55539997-55539579 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 271
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 78, 55

Conread position: 8-410
Cow position: chr6:64718595-64719011 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 264
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 78, 60

Conread position: 8-411
Cow position: chr6:13849350-13849764 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 275
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 78, 60

Conread position: 8-411
Cow position: chr6:18513830-18514228 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 264
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 24, 28

Conread position: 8-464
Cow position: chr6:25216578-25217053 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 305
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 116, 68

Conread position: 8-475
Cow position: chr6:18913202-18912709 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 323
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 78, 60

Conread position: 8-537
Cow position: chr6:14133470-14132926 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 368
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 24, 28

Conread position: 8-537
Cow position: chr6:46296547-46297090 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 367
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 24, 28

Conread position: 8-540
Cow position: chr6:39435647-39435095 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 362
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 78, 60

Conread position: 8-590
Cow position: chr6:2376982-2377573 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 392
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 79, 24

Conread position: 8-620
Cow position: chr6:1796391-1795750 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 8-743
Cow position: chr6:35874436-35873665 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 483
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 83, 62

Conread position: 8-842
Cow position: chr6:62577909-62577030 (view UCSC Genome Browser custom track)
Alignm length: 887
Alignm identity: 551
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 28

Conread position: 8-868
Cow position: chr6:37386857-37387759 (view UCSC Genome Browser custom track)
Alignm length: 917
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-879
Cow position: chr6:34128735-34129648 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 68

Conread position: 8-881
Cow position: chr6:1535975-1536898 (view UCSC Genome Browser custom track)
Alignm length: 936
Alignm identity: 574
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 165

Conread position: 8-881
Cow position: chr6:3151506-3152411 (view UCSC Genome Browser custom track)
Alignm length: 926
Alignm identity: 572
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 78, 59

Conread position: 8-881
Cow position: chr6:24241563-24242482 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 576
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 79, 62

Conread position: 8-881
Cow position: chr6:28186561-28185673 (view UCSC Genome Browser custom track)
Alignm length: 904
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-885
Cow position: chr6:11870655-11869736 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 8-885
Cow position: chr6:51732357-51733279 (view UCSC Genome Browser custom track)
Alignm length: 933
Alignm identity: 574
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 113, 68

Conread position: 8-893
Cow position: chr6:329083-328159 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 28

Conread position: 8-893
Cow position: chr6:1508229-1507306 (view UCSC Genome Browser custom track)
Alignm length: 932
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr6:7139059-7138137 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-893
Cow position: chr6:10043491-10044419 (view UCSC Genome Browser custom track)
Alignm length: 940
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr6:11018934-11019861 (view UCSC Genome Browser custom track)
Alignm length: 938
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr6:16051016-16050089 (view UCSC Genome Browser custom track)
Alignm length: 939
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-893
Cow position: chr6:20351817-20350885 (view UCSC Genome Browser custom track)
Alignm length: 950
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr6:28064270-28065196 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-893
Cow position: chr6:43620004-43620935 (view UCSC Genome Browser custom track)
Alignm length: 946
Alignm identity: 609
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 8-893
Cow position: chr6:55237967-55238894 (view UCSC Genome Browser custom track)
Alignm length: 938
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 8-893
Cow position: chr6:60378435-60379367 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-921
Cow position: chr6:3486122-3485186 (view UCSC Genome Browser custom track)
Alignm length: 959
Alignm identity: 588
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 79, 62

Conread position: 8-921
Cow position: chr6:3887234-3886272 (view UCSC Genome Browser custom track)
Alignm length: 969
Alignm identity: 585
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 79, 68

Conread position: 8-921
Cow position: chr6:25791423-25790468 (view UCSC Genome Browser custom track)
Alignm length: 969
Alignm identity: 602
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-929
Cow position: chr6:11722922-11721966 (view UCSC Genome Browser custom track)
Alignm length: 976
Alignm identity: 608
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 60

Conread position: 8-930
Cow position: chr6:2580695-2581643 (view UCSC Genome Browser custom track)
Alignm length: 967
Alignm identity: 589
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 105, 60

Conread position: 8-933
Cow position: chr6:39911600-39912568 (view UCSC Genome Browser custom track)
Alignm length: 981
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 11-472
Cow position: chr6:28702430-28701947 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 319
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 21, 25

Conread position: 11-883
Cow position: chr6:27152165-27151245 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 25

Conread position: 11-893
Cow position: chr6:40277350-40278263 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 568
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 21, 25

Conread position: 11-893
Cow position: chr6:62664059-62664979 (view UCSC Genome Browser custom track)
Alignm length: 934
Alignm identity: 578
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 25

Conread position: 11-893
Cow position: chr6:68029455-68030383 (view UCSC Genome Browser custom track)
Alignm length: 938
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 65

Conread position: 13-411
Cow position: chr6:39349670-39350084 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 278
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 19, 23

Conread position: 14-555
Cow position: chr6:13979041-13979596 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 366
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 18, 22

Conread position: 14-881
Cow position: chr6:17596007-17595092 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 571
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 73, 54

Conread position: 14-881
Cow position: chr6:50720394-50721289 (view UCSC Genome Browser custom track)
Alignm length: 915
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 143

Conread position: 14-893
Cow position: chr6:12664035-12663111 (view UCSC Genome Browser custom track)
Alignm length: 935
Alignm identity: 586
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 54

Conread position: 14-893
Cow position: chr6:19104629-19103704 (view UCSC Genome Browser custom track)
Alignm length: 942
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 22

Conread position: 15-400
Cow position: chr6:15278273-15277868 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 264
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 71, 55

Conread position: 15-465
Cow position: chr6:3573065-3573525 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 304
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 71, 44

Conread position: 15-544
Cow position: chr6:3263414-3262882 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 334
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 69, 51

Conread position: 15-881
Cow position: chr6:36530570-36531466 (view UCSC Genome Browser custom track)
Alignm length: 925
Alignm identity: 577
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 55, 75

Conread position: 15-921
Cow position: chr6:50570487-50571424 (view UCSC Genome Browser custom track)
Alignm length: 960
Alignm identity: 595
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 109, 52

Conread position: 15-933
Cow position: chr6:15138886-15137927 (view UCSC Genome Browser custom track)
Alignm length: 982
Alignm identity: 611
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 72, 27

Conread position: 15-946
Cow position: chr6:32417791-32418769 (view UCSC Genome Browser custom track)
Alignm length: 996
Alignm identity: 619
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 113, 48

Conread position: 16-946
Cow position: chr6:7941494-7940530 (view UCSC Genome Browser custom track)
Alignm length: 992
Alignm identity: 605
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 101, 47

Conread position: 17-447
Cow position: chr6:5750216-5750668 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 292
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 15, 19

Conread position: 19-410
Cow position: chr6:617448-617847 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 261
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 5, 45

Conread position: 20-886
Cow position: chr6:1574822-1575709 (view UCSC Genome Browser custom track)
Alignm length: 926
Alignm identity: 577
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 12, 7

Conread position: 23-464
Cow position: chr6:28400957-28400497 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 305
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 9, 13

Conread position: 23-475
Cow position: chr6:28135226-28135699 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 314
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 64, 10

Conread position: 60-788
Cow position: chr6:41390128-41389361 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 474
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 27, 10

Conread position: 62-880
Cow position: chr6:65820256-65819388 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 481

Conread position: 81-735
Cow position: chr6:28002035-28001334 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 432
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 86-411
Cow position: chr6:31813646-31813306 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 226
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 38, 297

Conread position: 131-828
Cow position: chr6:45590948-45591682 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 478
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 26, 249

Conread position: 135-475
Cow position: chr6:12971515-12971152 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 240
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 246

Conread position: 149-388
Cow position: chr6:61210235-61210470 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 12

Conread position: 158-943
Cow position: chr6:37385583-37386401 (view UCSC Genome Browser custom track)
Alignm length: 832
Alignm identity: 503
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 107

Conread position: 160-900
Cow position: chr6:22738267-22737495 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 480
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 48, 359

Conread position: 190-893
Cow position: chr6:2876571-2875830 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 468
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 129

Conread position: 201-555
Cow position: chr6:19530228-19530582 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 243
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 112, 46

Conread position: 207-893
Cow position: chr6:26668545-26667820 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 456
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 25, 330

Conread position: 230-592
Cow position: chr6:31010310-31009937 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 246
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 151, 18

Conread position: 248-561
Cow position: chr6:16695714-16696031 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 139

Conread position: 255-942
Cow position: chr6:9047898-9047235 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 444
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 50, 18

Conread position: 494-945
Cow position: chr6:47526048-47526520 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 312
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 71, 33

Conread position: 618-926
Cow position: chr6:32658602-32658297 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 155, 118

Conread position: 618-937
Cow position: chr6:15154035-15154359 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 207
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 172, 145

Conread position: 619-943
Cow position: chr6:24045748-24045425 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 216
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 5, 123

Conread position: 621-946
Cow position: chr6:30077354-30077025 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 212
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 17, 23

Conread position: 622-933
Cow position: chr6:618345-618658 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 202
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 207, 145

Conread position: 622-941
Cow position: chr6:59240014-59240328 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 60, 38

Conread position: 622-946
Cow position: chr6:62852512-62852826 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 216
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 215, 141

Conread position: 626-945
Cow position: chr6:37866233-37866545 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 216
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 176, 54

Conread position: 677-914
Cow position: chr6:7921053-7920811 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 140, 205

Show alignments to all cow chromosomes.