Cow genome map

Conread name: Ss1.1-Pig4-TMW8053L10.5

Conread position: 2-400
Cow position: chr7:54697656-54698063 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 270
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 84, 66

Conread position: 2-406
Cow position: chr7:52802237-52801820 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 272
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 79, 316

Conread position: 2-410
Cow position: chr7:43280245-43280666 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 281
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 82, 51

Conread position: 2-787
Cow position: chr7:7276767-7277595 (view UCSC Genome Browser custom track)
Alignm length: 835
Alignm identity: 514
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 34

Conread position: 2-893
Cow position: chr7:21241375-21240465 (view UCSC Genome Browser custom track)
Alignm length: 934
Alignm identity: 574
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 88, 60

Conread position: 2-893
Cow position: chr7:45169897-45170830 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 68

Conread position: 8-251
Cow position: chr7:33403516-33403264 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 78, 56

Conread position: 8-294
Cow position: chr7:22346119-22346416 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 78, 49

Conread position: 8-297
Cow position: chr7:20558148-20558449 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 199
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 24, 28

Conread position: 8-360
Cow position: chr7:22717752-22717395 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 236
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 61

Conread position: 8-363
Cow position: chr7:15557160-15556798 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 236
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 127, 60

Conread position: 8-400
Cow position: chr7:4558720-4558309 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 282
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 78, 55

Conread position: 8-400
Cow position: chr7:34415986-34415582 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 262
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 60

Conread position: 8-400
Cow position: chr7:55040114-55039706 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 270
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 76, 60

Conread position: 8-410
Cow position: chr7:3122246-3122660 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 260
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 77, 60

Conread position: 8-411
Cow position: chr7:547219-547621 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 271
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 116, 68

Conread position: 8-457
Cow position: chr7:21232637-21232177 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 290
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 116, 68

Conread position: 8-485
Cow position: chr7:1177171-1177665 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 326
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 83, 163

Conread position: 8-544
Cow position: chr7:65871136-65870589 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 350
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 73, 60

Conread position: 8-555
Cow position: chr7:8337746-8338304 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 365
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 116, 68

Conread position: 8-788
Cow position: chr7:29472821-29473631 (view UCSC Genome Browser custom track)
Alignm length: 826
Alignm identity: 516
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 79, 55

Conread position: 8-831
Cow position: chr7:60465084-60465944 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-868
Cow position: chr7:21989001-21989907 (view UCSC Genome Browser custom track)
Alignm length: 916
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 69

Conread position: 8-881
Cow position: chr7:443893-442976 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-881
Cow position: chr7:1368315-1367410 (view UCSC Genome Browser custom track)
Alignm length: 923
Alignm identity: 571
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 78, 60

Conread position: 8-881
Cow position: chr7:20797087-20796186 (view UCSC Genome Browser custom track)
Alignm length: 920
Alignm identity: 570
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 79, 68

Conread position: 8-881
Cow position: chr7:34488283-34489191 (view UCSC Genome Browser custom track)
Alignm length: 925
Alignm identity: 574
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 78, 60

Conread position: 8-881
Cow position: chr7:47191371-47190458 (view UCSC Genome Browser custom track)
Alignm length: 934
Alignm identity: 588
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 116, 60

Conread position: 8-892
Cow position: chr7:49604205-49603276 (view UCSC Genome Browser custom track)
Alignm length: 941
Alignm identity: 583
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr7:13545-12616 (view UCSC Genome Browser custom track)
Alignm length: 942
Alignm identity: 582
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr7:6627009-6626077 (view UCSC Genome Browser custom track)
Alignm length: 951
Alignm identity: 603
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr7:6665865-6666796 (view UCSC Genome Browser custom track)
Alignm length: 942
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr7:6722397-6723329 (view UCSC Genome Browser custom track)
Alignm length: 944
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-893
Cow position: chr7:7260888-7261814 (view UCSC Genome Browser custom track)
Alignm length: 944
Alignm identity: 587
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr7:11461764-11460841 (view UCSC Genome Browser custom track)
Alignm length: 940
Alignm identity: 586
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 8-893
Cow position: chr7:20151348-20150433 (view UCSC Genome Browser custom track)
Alignm length: 925
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr7:26927808-26926881 (view UCSC Genome Browser custom track)
Alignm length: 938
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-893
Cow position: chr7:37165234-37166157 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 62

Conread position: 8-893
Cow position: chr7:46265532-46266463 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr7:65558051-65557122 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr7:65813202-65814134 (view UCSC Genome Browser custom track)
Alignm length: 942
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-899
Cow position: chr7:195534-194602 (view UCSC Genome Browser custom track)
Alignm length: 946
Alignm identity: 577
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 79, 62

Conread position: 8-921
Cow position: chr7:13531538-13530581 (view UCSC Genome Browser custom track)
Alignm length: 967
Alignm identity: 585
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 116, 68

Conread position: 8-941
Cow position: chr7:1596624-1595649 (view UCSC Genome Browser custom track)
Alignm length: 986
Alignm identity: 623
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 203

Conread position: 9-385
Cow position: chr7:65512521-65512151 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 241
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 131, 20

Conread position: 11-400
Cow position: chr7:48637092-48637487 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 253
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 113, 65

Conread position: 11-893
Cow position: chr7:27099903-27098975 (view UCSC Genome Browser custom track)
Alignm length: 938
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 65

Conread position: 14-881
Cow position: chr7:25442148-25443058 (view UCSC Genome Browser custom track)
Alignm length: 922
Alignm identity: 567
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 73, 56

Conread position: 15-379
Cow position: chr7:24671839-24672204 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 245
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 117, 27

Conread position: 15-397
Cow position: chr7:57376054-57375666 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 266
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 29, 58

Conread position: 15-415
Cow position: chr7:13779268-13779669 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 272
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 73, 48

Conread position: 15-783
Cow position: chr7:33066332-33065549 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 491
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 109, 48

Conread position: 15-885
Cow position: chr7:5305608-5304696 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 36

Conread position: 16-378
Cow position: chr7:68853592-68853222 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 71, 54

Conread position: 16-400
Cow position: chr7:54510816-54510427 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 253
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 70, 54

Conread position: 16-406
Cow position: chr7:34211535-34211939 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 283
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 68, 52

Conread position: 16-410
Cow position: chr7:8142596-8142191 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 267
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 108, 26

Conread position: 17-893
Cow position: chr7:1332040-1331118 (view UCSC Genome Browser custom track)
Alignm length: 939
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 51

Conread position: 23-881
Cow position: chr7:46748366-46749270 (view UCSC Genome Browser custom track)
Alignm length: 912
Alignm identity: 558
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 64, 47

Conread position: 23-893
Cow position: chr7:21424986-21424072 (view UCSC Genome Browser custom track)
Alignm length: 925
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 13

Conread position: 24-407
Cow position: chr7:27711786-27712177 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 257
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 100, 46

Conread position: 24-461
Cow position: chr7:20368737-20368279 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 300
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 107, 52

Conread position: 24-881
Cow position: chr7:59773695-59774596 (view UCSC Genome Browser custom track)
Alignm length: 910
Alignm identity: 557
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 63, 46

Conread position: 25-406
Cow position: chr7:33808960-33809353 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 244
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 78

Conread position: 25-410
Cow position: chr7:34414671-34414273 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 261
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 65, 45

Conread position: 25-783
Cow position: chr7:59458109-59458894 (view UCSC Genome Browser custom track)
Alignm length: 808
Alignm identity: 507
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 110, 43

Conread position: 25-922
Cow position: chr7:24806106-24805166 (view UCSC Genome Browser custom track)
Alignm length: 957
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 45

Conread position: 30-832
Cow position: chr7:24250744-24251557 (view UCSC Genome Browser custom track)
Alignm length: 845
Alignm identity: 519
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 54, 38

Conread position: 46-893
Cow position: chr7:1442433-1441540 (view UCSC Genome Browser custom track)
Alignm length: 906
Alignm identity: 568
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 432

Conread position: 70-757
Cow position: chr7:52763216-52762493 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 445
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 23, 244

Conread position: 86-475
Cow position: chr7:54692871-54693285 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 38, 297

Conread position: 119-464
Cow position: chr7:46194775-46194409 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 243
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 7

Conread position: 135-883
Cow position: chr7:36344282-36343496 (view UCSC Genome Browser custom track)
Alignm length: 798
Alignm identity: 501
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 110

Conread position: 158-476
Cow position: chr7:2410190-2410522 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 218
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 58, 31

Conread position: 160-555
Cow position: chr7:67586336-67585944 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 269
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 48, 83

Conread position: 179-783
Cow position: chr7:58441105-58441730 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 398
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 58

Conread position: 190-881
Cow position: chr7:20776349-20777031 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 437
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 305

Conread position: 226-445
Cow position: chr7:26023433-26023666 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 84, 22

Conread position: 244-929
Cow position: chr7:44499600-44498912 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 439
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 62, 140

Conread position: 270-883
Cow position: chr7:69366-69997 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 405
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 113, 177

Conread position: 344-698
Cow position: chr7:3325983-3325631 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 239
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 34, 187

Conread position: 436-903
Cow position: chr7:44524410-44523921 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 308
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 18, 284

Conread position: 468-804
Cow position: chr7:46192315-46192669 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 19

Conread position: 488-946
Cow position: chr7:37180087-37180535 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 296
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 134, 32

Conread position: 591-946
Cow position: chr7:30716604-30716253 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 231
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 226, 31

Conread position: 595-942
Cow position: chr7:23913225-23913581 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 238
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 227

Conread position: 595-945
Cow position: chr7:34664589-34664941 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 229
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 74

Conread position: 618-934
Cow position: chr7:55964421-55964741 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 203
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 169, 42

Conread position: 618-943
Cow position: chr7:4557758-4557435 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 217
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 47

Conread position: 621-843
Cow position: chr7:30043003-30043227 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 106, 193

Conread position: 621-926
Cow position: chr7:13779876-13780186 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 204
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 36, 60

Conread position: 622-941
Cow position: chr7:42505069-42505387 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 218
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 8, 165

Conread position: 623-946
Cow position: chr7:66274088-66273760 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 222
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 48, 26

Conread position: 626-920
Cow position: chr7:1549488-1549191 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 195
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 110

Conread position: 626-942
Cow position: chr7:48105054-48105373 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 208
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 200, 159

Conread position: 628-789
Cow position: chr7:27233452-27233612 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 157, 0

Conread position: 628-921
Cow position: chr7:67802356-67802653 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 196
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 100, 109

Conread position: 643-943
Cow position: chr7:34822188-34821892 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 202
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 184, 150

Conread position: 656-925
Cow position: chr7:5149601-5149334 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 25

Conread position: 666-941
Cow position: chr7:265231-265513 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 147

Conread position: 679-945
Cow position: chr7:6207667-6207939 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 150, 196

Show alignments to all cow chromosomes.