Cow genome map

Conread name: Ss1.1-Pig4-TMW8053L10.5

Conread position: 1-407
Cow position: chr9:22474094-22473672 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 248
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 86, 69

Conread position: 2-475
Cow position: chr9:12726645-12727125 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 313
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 84, 66

Conread position: 3-395
Cow position: chr9:31060926-31061318 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 257
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 130, 51

Conread position: 3-556
Cow position: chr9:11440483-11439925 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 370
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 80, 60

Conread position: 5-881
Cow position: chr9:16177792-16178709 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 66

Conread position: 8-272
Cow position: chr9:47044172-47044448 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 183
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 60

Conread position: 8-320
Cow position: chr9:28680177-28680501 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 78, 60

Conread position: 8-334
Cow position: chr9:6884531-6884871 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 218
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 78, 60

Conread position: 8-377
Cow position: chr9:7004931-7005301 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 240
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 147, 62

Conread position: 8-381
Cow position: chr9:14039990-14039609 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 244
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 85, 28

Conread position: 8-404
Cow position: chr9:43303017-43302606 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 271
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 79, 34

Conread position: 8-411
Cow position: chr9:203086-202670 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 274
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 24, 28

Conread position: 8-411
Cow position: chr9:26421771-26421355 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 280
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 28

Conread position: 8-411
Cow position: chr9:30828957-30829372 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 271
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 24, 28

Conread position: 8-457
Cow position: chr9:34240897-34240423 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 317
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 79, 48

Conread position: 8-458
Cow position: chr9:26738218-26738698 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 312
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 98, 68

Conread position: 8-475
Cow position: chr9:37175006-37175499 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 323
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 79, 62

Conread position: 8-475
Cow position: chr9:50326047-50326539 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 327
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 24, 28

Conread position: 8-501
Cow position: chr9:7059861-7059338 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 333
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 76, 60

Conread position: 8-790
Cow position: chr9:2213349-2214159 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 519
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 116, 55

Conread position: 8-868
Cow position: chr9:2680776-2681662 (view UCSC Genome Browser custom track)
Alignm length: 903
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 8-881
Cow position: chr9:27037313-27038229 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 573
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 79, 34

Conread position: 8-881
Cow position: chr9:30674272-30675197 (view UCSC Genome Browser custom track)
Alignm length: 932
Alignm identity: 573
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 73, 60

Conread position: 8-881
Cow position: chr9:38678337-38679240 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 574
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 79, 68

Conread position: 8-881
Cow position: chr9:44203867-44202958 (view UCSC Genome Browser custom track)
Alignm length: 923
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-881
Cow position: chr9:47004943-47005864 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 568
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 79, 62

Conread position: 8-883
Cow position: chr9:31809787-31810702 (view UCSC Genome Browser custom track)
Alignm length: 925
Alignm identity: 568
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 116, 68

Conread position: 8-893
Cow position: chr9:778614-777680 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 573
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr9:4941288-4940366 (view UCSC Genome Browser custom track)
Alignm length: 940
Alignm identity: 583
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 78, 60

Conread position: 8-893
Cow position: chr9:45875721-45876651 (view UCSC Genome Browser custom track)
Alignm length: 939
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-893
Cow position: chr9:48796091-48795159 (view UCSC Genome Browser custom track)
Alignm length: 950
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr9:52525359-52526284 (view UCSC Genome Browser custom track)
Alignm length: 942
Alignm identity: 595
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 8-893
Cow position: chr9:64013019-64012096 (view UCSC Genome Browser custom track)
Alignm length: 941
Alignm identity: 584
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 24, 28

Conread position: 8-920
Cow position: chr9:18507622-18506663 (view UCSC Genome Browser custom track)
Alignm length: 968
Alignm identity: 595
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 68

Conread position: 8-921
Cow position: chr9:1063497-1062534 (view UCSC Genome Browser custom track)
Alignm length: 972
Alignm identity: 598
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 28

Conread position: 8-921
Cow position: chr9:5627018-5627981 (view UCSC Genome Browser custom track)
Alignm length: 972
Alignm identity: 597
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 79, 62

Conread position: 8-921
Cow position: chr9:9015276-9016236 (view UCSC Genome Browser custom track)
Alignm length: 970
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 62

Conread position: 8-921
Cow position: chr9:10856220-10857182 (view UCSC Genome Browser custom track)
Alignm length: 975
Alignm identity: 604
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 79, 62

Conread position: 8-921
Cow position: chr9:10938928-10939886 (view UCSC Genome Browser custom track)
Alignm length: 972
Alignm identity: 594
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 79, 62

Conread position: 8-924
Cow position: chr9:19157078-19156127 (view UCSC Genome Browser custom track)
Alignm length: 966
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 60

Conread position: 11-883
Cow position: chr9:44167801-44168714 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 571
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 76, 44

Conread position: 12-893
Cow position: chr9:14002248-14003170 (view UCSC Genome Browser custom track)
Alignm length: 938
Alignm identity: 581
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 20, 24

Conread position: 14-407
Cow position: chr9:6921547-6921138 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 277
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 18, 22

Conread position: 15-380
Cow position: chr9:7019212-7019572 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 242
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 25, 56

Conread position: 15-381
Cow position: chr9:17900358-17899991 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 238
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 149

Conread position: 15-400
Cow position: chr9:13118516-13118132 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 270
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 71, 48

Conread position: 15-410
Cow position: chr9:61238731-61238322 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 273
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 66, 149

Conread position: 15-843
Cow position: chr9:2288925-2288080 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 493
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 71, 7

Conread position: 15-881
Cow position: chr9:32971586-32972489 (view UCSC Genome Browser custom track)
Alignm length: 920
Alignm identity: 569
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 72, 55

Conread position: 15-921
Cow position: chr9:2526501-2527448 (view UCSC Genome Browser custom track)
Alignm length: 962
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 15-921
Cow position: chr9:5006188-5007135 (view UCSC Genome Browser custom track)
Alignm length: 967
Alignm identity: 596
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 109, 65

Conread position: 15-930
Cow position: chr9:59430726-59431673 (view UCSC Genome Browser custom track)
Alignm length: 963
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 55

Conread position: 16-881
Cow position: chr9:3545037-3545949 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 579
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 77, 54

Conread position: 17-893
Cow position: chr9:1249783-1248863 (view UCSC Genome Browser custom track)
Alignm length: 935
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 19

Conread position: 18-358
Cow position: chr9:8656457-8656111 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 222
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 50

Conread position: 18-473
Cow position: chr9:9367217-9367669 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 299
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 67, 16

Conread position: 20-946
Cow position: chr9:27487656-27486723 (view UCSC Genome Browser custom track)
Alignm length: 955
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 36

Conread position: 22-945
Cow position: chr9:50063714-50062750 (view UCSC Genome Browser custom track)
Alignm length: 978
Alignm identity: 589
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 62, 7

Conread position: 23-893
Cow position: chr9:1072068-1071151 (view UCSC Genome Browser custom track)
Alignm length: 931
Alignm identity: 579
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 9, 13

Conread position: 24-359
Cow position: chr9:28024028-28024375 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 63, 52

Conread position: 35-415
Cow position: chr9:1983047-1983438 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 248
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 28

Conread position: 35-893
Cow position: chr9:1098822-1099727 (view UCSC Genome Browser custom track)
Alignm length: 914
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 35

Conread position: 35-946
Cow position: chr9:24723013-24723943 (view UCSC Genome Browser custom track)
Alignm length: 958
Alignm identity: 597
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 51, 28

Conread position: 39-881
Cow position: chr9:15053650-15052767 (view UCSC Genome Browser custom track)
Alignm length: 896
Alignm identity: 551
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 43, 31

Conread position: 56-464
Cow position: chr9:27782641-27782207 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 287
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 31, 14

Conread position: 64-783
Cow position: chr9:35157999-35157251 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 465
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 23, 110

Conread position: 70-881
Cow position: chr9:18538927-18539784 (view UCSC Genome Browser custom track)
Alignm length: 864
Alignm identity: 526
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 17, 87

Conread position: 76-475
Cow position: chr9:35544260-35543834 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 281
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 11, 309

Conread position: 88-893
Cow position: chr9:31418221-31417383 (view UCSC Genome Browser custom track)
Alignm length: 848
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 294

Conread position: 89-411
Cow position: chr9:999748-1000085 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 224
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 47, 294

Conread position: 97-889
Cow position: chr9:22655105-22655940 (view UCSC Genome Browser custom track)
Alignm length: 851
Alignm identity: 528
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 59

Conread position: 131-540
Cow position: chr9:50224000-50224414 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 295
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 33

Conread position: 135-410
Cow position: chr9:52514458-52514744 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 188
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 146-714
Cow position: chr9:3377643-3378207 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 367
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 158, 11

Conread position: 160-881
Cow position: chr9:2872841-2873596 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 467
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 83

Conread position: 161-788
Cow position: chr9:50002819-50003472 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 418
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 47, 217

Conread position: 168-879
Cow position: chr9:46668425-46667678 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 478
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 40, 60

Conread position: 172-464
Cow position: chr9:9312945-9312634 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 5

Conread position: 175-881
Cow position: chr9:6708544-6707796 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 475
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 33, 121

Conread position: 176-453
Cow position: chr9:10110030-10110315 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 188
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 18

Conread position: 202-537
Cow position: chr9:46196001-46195685 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 231
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 49

Conread position: 207-749
Cow position: chr9:4579092-4578550 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 368
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 28, 42

Conread position: 285-786
Cow position: chr9:54790456-54789951 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 328
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 33

Conread position: 335-930
Cow position: chr9:35022539-35023135 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 388
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 101

Conread position: 529-873
Cow position: chr9:45153597-45153953 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 236
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 16

Conread position: 666-936
Cow position: chr9:56910465-56910742 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 186
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 137

Conread position: 676-862
Cow position: chr9:23554296-23554490 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 113, 176

Conread position: 691-945
Cow position: chr9:27741206-27741470 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 138

Conread position: 695-929
Cow position: chr9:32985321-32985549 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 197, 27

Conread position: 710-946
Cow position: chr9:34250316-34250555 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 38

Show alignments to all cow chromosomes.