Cow genome map

Conread name: Ss1.1-Pig4-TMW8053M18.3

Conread position: 2-269
Cow position: chr18:51819784-51819523 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 2-283
Cow position: chr18:51844592-51844315 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 78

Conread position: 3-251
Cow position: chr18:51753423-51753175 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 117, 43

Conread position: 3-269
Cow position: chr18:51796503-51796235 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 22

Conread position: 5-248
Cow position: chr18:51396820-51397067 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 79

Conread position: 26-248
Cow position: chr18:52441921-52442144 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 27-227
Cow position: chr18:51373700-51373494 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 159
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 21, 0

Conread position: 52-248
Cow position: chr18:51771877-51771675 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 60, 0

Conread position: 88-248
Cow position: chr18:49039019-49038858 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 9, 24

Conread position: 103-243
Cow position: chr18:50278831-50278970 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 114-251
Cow position: chr18:42073781-42073918 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 115-248
Cow position: chr18:50653457-50653324 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 115-248
Cow position: chr18:52421792-52421925 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 116-248
Cow position: chr18:51867647-51867779 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 119
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 116-248
Cow position: chr18:56332270-56332138 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 116-251
Cow position: chr18:33069671-33069536 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 116-251
Cow position: chr18:41956384-41956249 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 116-251
Cow position: chr18:42754458-42754323 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 116-251
Cow position: chr18:43124997-43124862 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 116-251
Cow position: chr18:56288186-56288051 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 34

Conread position: 116-252
Cow position: chr18:44195353-44195217 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 127-251
Cow position: chr18:52015241-52015117 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 127-251
Cow position: chr18:55531938-55531814 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 248-553
Cow position: chr18:51839870-51839565 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 210
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 24, 141

Conread position: 248-930
Cow position: chr18:51790379-51789691 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 37

Conread position: 248-930
Cow position: chr18:51813535-51812850 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 37

Conread position: 248-944
Cow position: chr18:51968545-51969239 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 75

Conread position: 248-956
Cow position: chr18:51873207-51873928 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 219

Conread position: 250-956
Cow position: chr18:51766566-51765854 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 35

Conread position: 271-945
Cow position: chr18:51752792-51752117 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 11

Conread position: 448-954
Cow position: chr18:51368895-51368376 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 325
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 52, 24

Conread position: 548-940
Cow position: chr18:42837531-42837136 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 243
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 51, 81

Conread position: 717-938
Cow position: chr18:52427957-52428179 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 149
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 25, 151

Conread position: 717-938
Cow position: chr18:52428209-52428431 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 148
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 21, 151

Conread position: 717-939
Cow position: chr18:52447852-52448075 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 146
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 717-948
Cow position: chr18:51839069-51838837 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 148

Conread position: 717-954
Cow position: chr18:44253819-44253581 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 717-954
Cow position: chr18:52428545-52428783 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 156
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 21, 118

Conread position: 717-954
Cow position: chr18:52433390-52433628 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 158
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 21, 151

Conread position: 717-954
Cow position: chr18:52433726-52433964 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 158
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 21, 118

Conread position: 717-954
Cow position: chr18:52448020-52448258 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 159
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 21, 224

Conread position: 717-956
Cow position: chr18:42791960-42792200 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 157
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 25, 33

Conread position: 717-957
Cow position: chr18:50848827-50849068 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 21, 106

Conread position: 718-937
Cow position: chr18:42675080-42674860 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 718-937
Cow position: chr18:51751842-51751622 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 718-938
Cow position: chr18:51368529-51368308 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 148
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 718-938
Cow position: chr18:52447433-52447654 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 718-938
Cow position: chr18:52447685-52447906 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 718-940
Cow position: chr18:42744392-42744169 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 718-940
Cow position: chr18:51400605-51400828 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 718-940
Cow position: chr18:51789484-51789261 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 145
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 718-940
Cow position: chr18:51812727-51812504 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 147
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 718-942
Cow position: chr18:51400773-51400998 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 149
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 718-945
Cow position: chr18:43093429-43093201 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 152
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 20, 45

Conread position: 718-945
Cow position: chr18:51752094-51751866 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 20, 81

Conread position: 718-945
Cow position: chr18:51789568-51789340 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 718-954
Cow position: chr18:42744308-42744071 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 159
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 24, 45

Conread position: 718-954
Cow position: chr18:51765841-51765604 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 20, 102

Conread position: 718-954
Cow position: chr18:51812307-51812070 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 718-954
Cow position: chr18:51839236-51838999 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 20, 0

Conread position: 718-956
Cow position: chr18:40324811-40324572 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 157
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 718-956
Cow position: chr18:43168285-43168524 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 153
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 718-959
Cow position: chr18:50848660-50848902 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 156
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 718-959
Cow position: chr18:51400437-51400679 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 162
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 718-960
Cow position: chr18:52447265-52447508 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 20, 117

Conread position: 719-945
Cow position: chr18:51812810-51812583 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 149
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 719-954
Cow position: chr18:51789651-51789415 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 720-948
Cow position: chr18:51400691-51400920 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 152
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 63

Conread position: 723-948
Cow position: chr18:49033052-49032826 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 723-948
Cow position: chr18:51400862-51401088 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 723-949
Cow position: chr18:51400526-51400753 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 149
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 728-948
Cow position: chr18:51874310-51874528 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 147
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 142, 7

Conread position: 731-943
Cow position: chr18:40075026-40075238 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 51

Conread position: 732-939
Cow position: chr18:51765239-51765031 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 140
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 6, 52

Conread position: 736-940
Cow position: chr18:51400288-51400492 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 139
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 75, 82

Conread position: 737-938
Cow position: chr18:51367586-51367385 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 737-954
Cow position: chr18:51874401-51874618 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 25

Conread position: 737-954
Cow position: chr18:52446949-52447166 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 144
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 738-941
Cow position: chr18:51839383-51839180 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 738-948
Cow position: chr18:51789715-51789505 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 738-948
Cow position: chr18:51812874-51812664 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 740-944
Cow position: chr18:51969353-51969557 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 139
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 128, 122

Conread position: 741-942
Cow position: chr18:51839548-51839347 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 134
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 745-940
Cow position: chr18:42744028-42743833 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 131
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 745-956
Cow position: chr18:44184617-44184406 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 125, 113

Conread position: 746-960
Cow position: chr18:51839123-51838910 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 211, 0

Conread position: 752-949
Cow position: chr18:53636020-53635823 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 83, 72

Show alignments to all cow chromosomes.