Cow genome map

Conread name: Ss1.1-Pig4-TMW8054E11.3

Conread position: 1-130
Cow position:
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-141
Cow position:
Alignm length: 145
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 28, 84

Conread position: 1-150
Cow position:
Alignm length: 150
Alignm identity: 115
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 142, 0

Conread position: 1-158
Cow position:
Alignm length: 158
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 149, 0

Conread position: 1-164
Cow position:
Alignm length: 164
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 1-164
Cow position:
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 69, 107

Conread position: 1-167
Cow position:
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 107, 0

Conread position: 1-186
Cow position:
Alignm length: 187
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 69, 136

Conread position: 1-186
Cow position:
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 1-211
Cow position:
Alignm length: 215
Alignm identity: 160
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 52, 145

Conread position: 1-229
Cow position:
Alignm length: 234
Alignm identity: 164
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 95, 28

Conread position: 1-245
Cow position:
Alignm length: 253
Alignm identity: 181
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 127, 45

Conread position: 1-246
Cow position:
Alignm length: 248
Alignm identity: 174
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 213, 0

Conread position: 1-252
Cow position:
Alignm length: 253
Alignm identity: 169
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 182, 215

Conread position: 1-282
Cow position:
Alignm length: 285
Alignm identity: 195
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 213, 180

Conread position: 1-295
Cow position:
Alignm length: 295
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 120, 0

Conread position: 1-304
Cow position:
Alignm length: 309
Alignm identity: 208
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 135, 288

Conread position: 1-304
Cow position:
Alignm length: 307
Alignm identity: 208
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 185, 64

Conread position: 1-325
Cow position:
Alignm length: 328
Alignm identity: 215
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 214, 174

Conread position: 1-337
Cow position:
Alignm length: 343
Alignm identity: 230
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 64, 209

Conread position: 1-337
Cow position:
Alignm length: 342
Alignm identity: 233
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 178, 317

Conread position: 1-344
Cow position:
Alignm length: 350
Alignm identity: 233
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 182, 48

Conread position: 1-350
Cow position:
Alignm length: 354
Alignm identity: 247
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 145, 60

Conread position: 1-351
Cow position:
Alignm length: 359
Alignm identity: 235
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 84, 96

Conread position: 1-352
Cow position:
Alignm length: 360
Alignm identity: 246
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 182, 64

Conread position: 1-354
Cow position:
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 165

Conread position: 1-354
Cow position:
Alignm length: 371
Alignm identity: 239
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 84, 10

Conread position: 1-354
Cow position:
Alignm length: 357
Alignm identity: 236
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 25, 123

Conread position: 1-359
Cow position:
Alignm length: 361
Alignm identity: 230
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 213, 32

Conread position: 1-359
Cow position:
Alignm length: 368
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 159

Conread position: 1-359
Cow position:
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 1-359
Cow position:
Alignm length: 370
Alignm identity: 251
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 44, 210

Conread position: 1-359
Cow position:
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 28

Conread position: 1-359
Cow position:
Alignm length: 368
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 24

Conread position: 1-359
Cow position:
Alignm length: 362
Alignm identity: 245
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 309, 36

Conread position: 1-359
Cow position:
Alignm length: 367
Alignm identity: 252
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 135, 33

Conread position: 1-359
Cow position:
Alignm length: 367
Alignm identity: 249
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 185, 72

Conread position: 1-359
Cow position:
Alignm length: 361
Alignm identity: 243
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 20, 100

Conread position: 1-359
Cow position:
Alignm length: 366
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 266

Conread position: 1-359
Cow position:
Alignm length: 370
Alignm identity: 251
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 184, 15

Conread position: 1-359
Cow position:
Alignm length: 372
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 82

Conread position: 1-359
Cow position:
Alignm length: 365
Alignm identity: 250
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 128, 15

Conread position: 1-365
Cow position:
Alignm length: 375
Alignm identity: 246
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 128, 61

Conread position: 1-366
Cow position:
Alignm length: 374
Alignm identity: 244
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 174, 123

Conread position: 1-369
Cow position:
Alignm length: 378
Alignm identity: 254
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 182, 33

Conread position: 1-370
Cow position:
Alignm length: 381
Alignm identity: 246
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 90, 375

Conread position: 1-371
Cow position:
Alignm length: 386
Alignm identity: 266
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 187, 51

Conread position: 1-371
Cow position:
Alignm length: 381
Alignm identity: 254
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 92, 68

Conread position: 1-436
Cow position:
Alignm length: 470
Alignm identity: 314
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 30, 92

Conread position: 2-233
Cow position:
Alignm length: 235
Alignm identity: 171
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 181, 143

Conread position: 2-291
Cow position:
Alignm length: 295
Alignm identity: 202
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 181, 43

Conread position: 2-335
Cow position:
Alignm length: 339
Alignm identity: 230
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 34, 68

Conread position: 2-354
Cow position:
Alignm length: 358
Alignm identity: 246
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 185, 13

Conread position: 2-356
Cow position:
Alignm length: 367
Alignm identity: 259
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 134, 119

Conread position: 2-359
Cow position:
Alignm length: 365
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 89

Conread position: 3-279
Cow position:
Alignm length: 282
Alignm identity: 199
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 135, 74

Conread position: 3-376
Cow position:
Alignm length: 383
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 292

Conread position: 5-119
Cow position:
Alignm length: 115
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 5-168
Cow position:
Alignm length: 164
Alignm identity: 120
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 5-181
Cow position:
Alignm length: 177
Alignm identity: 121
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-185
Cow position:
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 113, 127

Conread position: 5-186
Cow position:
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 5-248
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 178, 0

Conread position: 5-252
Cow position:
Alignm length: 253
Alignm identity: 178
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 178, 0

Conread position: 5-264
Cow position:
Alignm length: 265
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 178, 0

Conread position: 5-273
Cow position:
Alignm length: 274
Alignm identity: 187
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 178, 0

Conread position: 5-275
Cow position:
Alignm length: 277
Alignm identity: 185
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 178, 93

Conread position: 5-317
Cow position:
Alignm length: 320
Alignm identity: 222
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 178, 242

Conread position: 5-354
Cow position:
Alignm length: 358
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 178, 0

Conread position: 5-359
Cow position:
Alignm length: 363
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 63

Conread position: 5-359
Cow position:
Alignm length: 363
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 67

Conread position: 5-359
Cow position:
Alignm length: 364
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 127

Conread position: 5-359
Cow position:
Alignm length: 363
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 18

Conread position: 5-359
Cow position:
Alignm length: 364
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 270

Conread position: 5-359
Cow position:
Alignm length: 358
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 208

Conread position: 5-359
Cow position:
Alignm length: 363
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 5-359
Cow position:
Alignm length: 363
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 0

Conread position: 5-359
Cow position:
Alignm length: 363
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 5-359
Cow position:
Alignm length: 363
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 5-359
Cow position:
Alignm length: 373
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 5-359
Cow position:
Alignm length: 364
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 116

Conread position: 5-359
Cow position:
Alignm length: 363
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 83

Conread position: 5-359
Cow position:
Alignm length: 362
Alignm identity: 241
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 178, 116

Conread position: 5-359
Cow position:
Alignm length: 363
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 271

Conread position: 5-366
Cow position:
Alignm length: 370
Alignm identity: 252
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 178, 60

Conread position: 5-366
Cow position:
Alignm length: 372
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 130

Conread position: 5-366
Cow position:
Alignm length: 371
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 148

Conread position: 5-366
Cow position:
Alignm length: 379
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 5-368
Cow position:
Alignm length: 368
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 204

Conread position: 5-368
Cow position:
Alignm length: 373
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 5-368
Cow position:
Alignm length: 373
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 5-368
Cow position:
Alignm length: 377
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 5-368
Cow position:
Alignm length: 373
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 5-368
Cow position:
Alignm length: 373
Alignm identity: 252
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 189, 64

Conread position: 5-368
Cow position:
Alignm length: 369
Alignm identity: 244
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 209, 0

Conread position: 5-368
Cow position:
Alignm length: 373
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 73

Conread position: 5-368
Cow position:
Alignm length: 373
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 133

Conread position: 5-368
Cow position:
Alignm length: 373
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 284

Conread position: 5-368
Cow position:
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 5-369
Cow position:
Alignm length: 374
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 239

Conread position: 5-369
Cow position:
Alignm length: 373
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 0

Conread position: 5-434
Cow position:
Alignm length: 440
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 384

Conread position: 5-444
Cow position:
Alignm length: 454
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 83

Conread position: 5-453
Cow position:
Alignm length: 460
Alignm identity: 304
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 178, 36

Conread position: 6-356
Cow position:
Alignm length: 360
Alignm identity: 245
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 177, 94

Conread position: 6-454
Cow position:
Alignm length: 473
Alignm identity: 312
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 177, 396

Conread position: 7-359
Cow position:
Alignm length: 361
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 0

Conread position: 7-454
Cow position:
Alignm length: 460
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 93

Conread position: 8-252
Cow position:
Alignm length: 251
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 175, 47

Conread position: 8-359
Cow position:
Alignm length: 357
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 116

Conread position: 12-333
Cow position:
Alignm length: 328
Alignm identity: 221
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 181, 63

Conread position: 16-304
Cow position:
Alignm length: 297
Alignm identity: 210
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 122, 37

Conread position: 16-321
Cow position:
Alignm length: 313
Alignm identity: 209
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 167, 18

Conread position: 16-354
Cow position:
Alignm length: 348
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 0

Conread position: 17-298
Cow position:
Alignm length: 290
Alignm identity: 192
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 166, 85

Conread position: 27-349
Cow position:
Alignm length: 328
Alignm identity: 226
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 188, 94

Conread position: 30-223
Cow position:
Alignm length: 197
Alignm identity: 144
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 164, 113

Conread position: 46-359
Cow position:
Alignm length: 319
Alignm identity: 218
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 140, 194

Conread position: 46-362
Cow position:
Alignm length: 321
Alignm identity: 224
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 66, 44

Conread position: 49-368
Cow position:
Alignm length: 330
Alignm identity: 227
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 74, 170

Conread position: 63-350
Cow position:
Alignm length: 297
Alignm identity: 207
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 75, 37

Conread position: 66-359
Cow position:
Alignm length: 302
Alignm identity: 209
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 117, 0

Conread position: 96-366
Cow position:
Alignm length: 277
Alignm identity: 177
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 197

Conread position: 108-353
Cow position:
Alignm length: 256
Alignm identity: 177
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 63, 37

Conread position: 192-359
Cow position:
Alignm length: 173
Alignm identity: 123
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 23, 132

Show alignments to all cow chromosomes.