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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8054E11.3
        

               
Conread position:
               
1-114
               

               
Cow position:
               
chr29:40095949-40095837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr29:26129075-26129191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr29:32942063-32941945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr29:29701791-29701914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr29:10159322-10159447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-130
               

               
Cow position:
               
chr29:18365205-18365334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr29:2484712-2484862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
69, 48
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr29:13640114-13640266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr29:19761476-19761307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr29:10297446-10297616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr29:21445920-21446105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 102
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr29:43517562-43517748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
136, 25
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr29:30106427-30106619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr29:960619-960406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr29:24951887-24951674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
185, 40
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr29:17965218-17965002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr29:42940396-42940183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr29:3106715-3106493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 113
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr29:27259465-27259717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr29:26263041-26262763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr29:32806479-32806203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
37, 70
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr29:4366577-4366282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr29:9639111-9639420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:7859822-7859515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
170, 36
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr29:16170128-16170452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
181, 134
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr29:649451-649129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr29:15941608-15941949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr29:35739283-35739613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 142
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr29:17977850-17977528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 171
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr29:3584800-3585138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr29:13849528-13849875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
172, 73
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr29:6860315-6860666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr29:4217711-4217376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
306, 77
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr29:10248269-10248623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr29:4864738-4864384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
7, 214
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr29:8511896-8511551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr29:2307419-2307058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 138
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr29:9079379-9079744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr29:17153654-17153301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 67
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:17408544-17408187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:24578070-24577707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:36209112-36208752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr29:13027635-13027276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 36
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr29:11365434-11365074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 76
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr29:15943766-15943405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
179, 99
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr29:27857975-27857624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr29:35280698-35281063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
35, 159
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr29:36323446-36323078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
137, 174
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr29:36633941-36634298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
182, 23
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr29:30432777-30433144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 64
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr29:3169455-3169809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
305, 74
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr29:578502-578865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 102
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr29:2745090-2745455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr29:32800686-32800318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 62
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr29:40418268-40418632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr29:7604820-7604428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 44
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr29:11136690-11136807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr29:20999628-20999396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
136, 44
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr29:9939377-9939646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr29:7724082-7723807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr29:18523008-18523284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr29:14037441-14037723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
186, 63
               

               
Conread position:
               
2-352
               

               
Cow position:
               
chr29:6871867-6872215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
211, 100
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr29:43964143-43964501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 163
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr29:11786419-11786055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 141
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr29:34737285-34737647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 40
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr29:7748296-7748651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
168, 10
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr29:8891843-8892212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
168, 10
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr29:10237240-10237628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
2-453
               

               
Cow position:
               
chr29:32289801-32289348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
210, 132
               

               
Conread position:
               
2-454
               

               
Cow position:
               
chr29:22949484-22949934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
165, 73
               

               
Conread position:
               
3-115
               

               
Cow position:
               
chr29:16042077-16041965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr29:40116728-40116470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr29:7700975-7701308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chr29:13585625-13585268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 67
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chr29:45651127-45651498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
180, 66
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr29:11526519-11526839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chr29:2886262-2886597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 161
               

               
Conread position:
               
4-354
               

               
Cow position:
               
chr29:29599775-29600126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
132, 174
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chr29:2461570-2461459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chr29:12852758-12852647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chr29:13923493-13923381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chr29:32329846-32329957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-119
               

               
Cow position:
               
chr29:19398074-19397960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr29:35736236-35736057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr29:1742917-1742737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr29:35076538-35076357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chr29:10032240-10032449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr29:19524725-19524936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
151, 116
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chr29:43729253-43729039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
189, 63
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chr29:21167683-21167455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
209, 176
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr29:16097226-16096992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr29:34851168-34850919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
178, 95
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chr29:32316483-32316230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
183, 159
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chr29:11119298-11119565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chr29:24983157-24983438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
178, 79
               

               
Conread position:
               
5-297
               

               
Cow position:
               
chr29:5961417-5961122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chr29:14313736-14314033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr29:1688156-1687858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
178, 67
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr29:16185365-16185669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chr29:2402100-2401791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
178, 47
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chr29:35228087-35227767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
120, 102
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chr29:27976591-27976917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
178, 271
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chr29:34780571-34780899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
84, 128
               

               
Conread position:
               
5-337
               

               
Cow position:
               
chr29:40954481-40954819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chr29:19890979-19890641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
5-343
               

               
Cow position:
               
chr29:18010989-18010646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
178, 331
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr29:38229421-38229075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 328
               

               
Conread position:
               
5-351
               

               
Cow position:
               
chr29:38409611-38409253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
5-352
               

               
Cow position:
               
chr29:21227389-21227035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 107
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chr29:38349948-38350298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
181, 40
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr29:32515742-32515384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr29:34794445-34794807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr29:42255564-42255923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:45050-45409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:727143-726781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:1576580-1576925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
178, 11
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:2837922-2838284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 253
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:3330006-3329644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:4164102-4163740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:7664586-7664947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 55
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:7847806-7847441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:13099586-13099222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
113, 215
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:13623960-13624322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:15072067-15072429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:16065124-16064763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 127
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:21429446-21429808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:21474563-21474201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:22746314-22745952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:24806869-24806507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:27702491-27702129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:28656954-28657316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:31184790-31184428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
178, 270
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:31765454-31765092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:32353009-32352670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
178, 160
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:32556330-32556692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:35265331-35264969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:35955892-35956250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 97
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:40157158-40156796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:40294721-40294359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:40618441-40618793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 127
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:42807398-42807043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr29:43326928-43326566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr29:607234-607587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
178, 160
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr29:7427728-7428097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr29:7811782-7812152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr29:20254578-20254212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 122
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:1478865-1478494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:2103256-2102889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 96
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:5240809-5240436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 25
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:6262595-6262966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:8623794-8624154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
301, 184
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:10644001-10644369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 69
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:10820301-10820673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:19514931-19515302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:22279786-22279416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 97
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:23980124-23979753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:26161421-26161795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 47
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:28696965-28697336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 271
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:32543551-32543179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 21
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:35273625-35273997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:39076305-39076676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 259
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:45207922-45207553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr29:45462645-45462275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chr29:6934897-6934534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 209
               

               
Conread position:
               
5-430
               

               
Cow position:
               
chr29:5785908-5785478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
178, 216
               

               
Conread position:
               
5-433
               

               
Cow position:
               
chr29:16036003-16036440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 383
               

               
Conread position:
               
5-433
               

               
Cow position:
               
chr29:32292008-32291570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 384
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr29:19619855-19620294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 271
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr29:19657295-19656874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 252
               

               
Conread position:
               
5-438
               

               
Cow position:
               
chr29:35002260-35002688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
178, 254
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr29:25929094-25929538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 385
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr29:10452402-10452858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 383
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr29:15966140-15966597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
189, 384
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:5977908-5978208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
180, 249
               

               
Conread position:
               
7-335
               

               
Cow position:
               
chr29:21255363-21255040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 173
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr29:12797994-12797648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 282
               

               
Conread position:
               
7-355
               

               
Cow position:
               
chr29:14208156-14208504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
176, 47
               

               
Conread position:
               
7-356
               

               
Cow position:
               
chr29:6218401-6218751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 24
               

               
Conread position:
               
7-366
               

               
Cow position:
               
chr29:16101706-16102072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
176, 235
               

               
Conread position:
               
7-371
               

               
Cow position:
               
chr29:40498464-40498834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 282
               

               
Conread position:
               
8-359
               

               
Cow position:
               
chr29:34331017-34331377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
9-350
               

               
Cow position:
               
chr29:21614673-21614331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
12-359
               

               
Cow position:
               
chr29:29589588-29589935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 222
               

               
Conread position:
               
16-370
               

               
Cow position:
               
chr29:18025604-18025239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 175
               

               
Conread position:
               
17-359
               

               
Cow position:
               
chr29:32732508-32732152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
22-370
               

               
Cow position:
               
chr29:32962707-32962356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
161, 86
               

               
Conread position:
               
43-368
               

               
Cow position:
               
chr29:407898-408222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
138, 58
               

               
Conread position:
               
49-214
               

               
Cow position:
               
chr29:5787122-5787290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
49-363
               

               
Cow position:
               
chr29:4200748-4200426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
53-359
               

               
Cow position:
               
chr29:16012811-16013119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
163, 90
               

               
Conread position:
               
53-359
               

               
Cow position:
               
chr29:44020737-44021038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
130, 49
               

               
Conread position:
               
62-369
               

               
Cow position:
               
chr29:38746405-38746090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
64-335
               

               
Cow position:
               
chr29:13058089-13057823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
124, 36
               

               
Conread position:
               
70-355
               

               
Cow position:
               
chr29:2463523-2463816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
113, 206
               

               
Conread position:
               
89-359
               

               
Cow position:
               
chr29:15699642-15699364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr29:17138415-17138185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
137-356
               

               
Cow position:
               
chr29:27310369-27310597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 125
               

               
Conread position:
               
137-436
               

               
Cow position:
               
chr29:14839301-14838996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 8
               
Show alignments to all cow chromosomes.