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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8054E11.3
        

               
Conread position:
               
1-114
               

               
Cow position:
               
chr5:27063002-27063113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr5:55985884-55985760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr5:14558221-14558347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr5:37384298-37384424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr5:39749205-39749331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chr5:72007656-72007786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr5:69098394-69098262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr5:39448310-39448446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr5:70103444-70103584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr5:50923607-50923765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr5:1344654-1344824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr5:35180366-35180191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr5:15362281-15362098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr5:34527803-34527629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr5:45941761-45941938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr5:46797137-46796960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr5:59782525-59782710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr5:16894913-16895101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
137, 86
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:59448477-59448675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
185, 150
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr5:6180776-6180558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr5:29558829-29558619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr5:49126941-49126731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
146, 24
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr5:33536848-33536638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
182, 10
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr5:6044235-6044009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr5:16085573-16085807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
76, 160
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr5:15855992-15856228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
136, 83
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr5:28223676-28223440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
179, 79
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr5:14551364-14551602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 46
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr5:21524290-21524044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
187, 220
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr5:24221232-24220985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
182, 169
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr5:18126852-18126606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
145, 23
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr5:10096603-10096858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
137, 176
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr5:18703194-18703444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr5:50899870-50899615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 135
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr5:4165864-4165609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr5:54088950-54088693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
193, 15
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr5:72046427-72046705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
182, 48
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr5:40270607-40270881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
185, 149
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr5:58461456-58461740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
98, 68
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr5:31921296-31921013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr5:46707874-46707593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
185, 174
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr5:41603519-41603206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr5:2704314-2704625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr5:31560489-31560182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr5:68593657-68593370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
182, 14
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr5:43991519-43991218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
182, 258
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr5:28947174-28947474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 111
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr5:45705248-45704951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
182, 144
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr5:32810788-32811101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr5:19211531-19211854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
194, 68
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr5:19969805-19970128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
185, 97
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr5:30302083-30301755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
182, 40
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr5:34471708-34472038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
136, 58
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr5:51502121-51501780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 56
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr5:51942888-51942538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
136, 257
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr5:51947841-51947491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
136, 257
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr5:50201765-50202104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
181, 29
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr5:41356606-41356953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
167, 94
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr5:24154534-24154191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
213, 60
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr5:26058357-26058010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr5:34669852-34670207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 174
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr5:41391968-41391607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr5:42676480-42676140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
107, 121
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr5:48225342-48225699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 11
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr5:49912241-49911888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr5:29769297-29768937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr5:57125249-57124897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 128
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr5:46626040-46626397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 101
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr5:53834889-53834530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr5:5682272-5682636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr5:23754119-23754475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
182, 76
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr5:49132430-49132083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
160, 57
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr5:4348762-4349115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 33
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr5:27691217-27690868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
182, 18
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr5:47855064-47854709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 143
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr5:73444637-73444276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 210
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:59910-60275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:4629997-4629641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 80
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:6032211-6031855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
183, 60
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:7140863-7141239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:8996774-8997145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:9235175-9235534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:15455001-15454648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
182, 42
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:17645845-17646210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 256
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:21828059-21827698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:22857396-22857763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
182, 121
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:24643637-24643991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:25920550-25920902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 76
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:26135031-26135402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:27178872-27178523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
113, 125
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:27491214-27490847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:33775549-33775896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
212, 41
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:34524003-34524376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
182, 83
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:47871871-47872235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 267
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:48574590-48574943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 99
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:49565801-49565449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 33
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:51818815-51818463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 92
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:52829549-52829909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 164
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:62159690-62160053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 14
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:71738348-71737985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
179, 81
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr5:18491645-18491275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
37, 107
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr5:28026631-28026269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
135, 33
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr5:64845031-64845392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 33
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr5:14904842-14905186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 89
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr5:34192157-34191789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr5:41228812-41229182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 48
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr5:70402116-70401746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr5:41954069-41954425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 74
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr5:68337279-68337633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
166, 92
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr5:41411202-41411575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
109, 38
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr5:62377602-62377236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
118, 35
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr5:64958545-64958912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 86
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr5:18883373-18883749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
169, 47
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:10262039-10262422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
100, 146
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:26466861-26466505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
178, 45
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:31916848-31916501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
180, 48
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:34300117-34299751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
212, 69
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:54721889-54721516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 48
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:58012566-58012938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
83, 246
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:69519837-69519465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
100, 248
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr5:18901556-18901167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
164, 15
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr5:32088542-32089002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr5:59771285-59770839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
188, 276
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr5:14781994-14782433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr5:47471633-47471169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
100, 205
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr5:58004466-58004027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 99
               

               
Conread position:
               
2-186
               

               
Cow position:
               
chr5:35207478-35207294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-186
               

               
Cow position:
               
chr5:60446668-60446485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr5:55088090-55087904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr5:40928791-40929037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
181, 100
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr5:75755809-75755566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
181, 57
               

               
Conread position:
               
2-292
               

               
Cow position:
               
chr5:6576355-6576651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 146
               

               
Conread position:
               
2-324
               

               
Cow position:
               
chr5:40897116-40897440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
181, 163
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr5:27173948-27173593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr5:5937542-5937177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 135
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr5:6572015-6572368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr5:32964824-32965195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
179, 219
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr5:54622850-54622491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
135, 9
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr5:62436359-62435997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 325
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr5:67654559-67654199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr5:15723079-15723463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 286
               

               
Conread position:
               
3-123
               

               
Cow position:
               
chr5:40828144-40828264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr5:27903634-27903395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
134, 44
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr5:59082966-59083228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
32, 151
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr5:51293726-51294021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr5:7552999-7552700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
180, 10
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr5:56442493-56442154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 118
               

               
Conread position:
               
3-340
               

               
Cow position:
               
chr5:34559380-34559027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr5:41548315-41548652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
192, 39
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr5:71456811-71457181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
3-439
               

               
Cow position:
               
chr5:46671838-46671400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 34
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr5:40792067-40791736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 12
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr5:46470517-46470872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr5:55684099-55683728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
122, 71
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chr5:58900811-58900922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chr5:59146841-59146730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chr5:67814095-67813984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-119
               

               
Cow position:
               
chr5:6060398-6060512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-130
               

               
Cow position:
               
chr5:2395075-2395201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chr5:7498752-7498928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr5:28013090-28012911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr5:43437709-43437890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chr5:66338084-66337887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
181, 133
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr5:39363105-39362894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr5:7175531-7175317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
178, 200
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr5:5715857-5716069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
174, 45
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr5:44275828-44275607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr5:6694767-6694533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr5:58245565-58245331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr5:76098797-76099031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr5:4683268-4683507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
178, 36
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr5:41586507-41586262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr5:24087817-24088066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr5:55722762-55722514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr5:57336131-57336379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr5:445712-445460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr5:12337507-12337255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr5:26052964-26052712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr5:12212766-12212497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chr5:15677293-15677024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
178, 84
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chr5:54337135-54336868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
178, 213
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chr5:4753900-4754171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chr5:17387184-17387461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr5:34709002-34708722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-296
               

               
Cow position:
               
chr5:8178367-8178076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
178, 159
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr5:45179614-45179917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 97
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chr5:21188167-21187851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr5:24159168-24158851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr5:29223032-29223361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
178, 204
               

               
Conread position:
               
5-337
               

               
Cow position:
               
chr5:47343106-47342769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
5-351
               

               
Cow position:
               
chr5:6585221-6585574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 97
               

               
Conread position:
               
5-353
               

               
Cow position:
               
chr5:443076-443432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr5:6124929-6125287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr5:18118742-18119100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr5:18558176-18558528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 49
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr5:25912951-25912608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr5:46650330-46649983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
134, 141
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr5:44617378-44617019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:295498-295136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:709918-710280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 127
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:1059334-1059696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:2977018-2976657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 49
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:3970757-3970396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 116
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:4015639-4015996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 322
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:4963153-4963509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 190
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:5106456-5106096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 47
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:6455430-6455792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:9002877-9003239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 238
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:10772597-10772954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 97
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:10840231-10840598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:11631752-11632114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:12133826-12133468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 203
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:14543068-14543429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 319
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:15761137-15761498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 116
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:20107794-20108156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:24577669-24577307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:24632806-24633168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:27907235-27907595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
178, 61
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:29255981-29256340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 165
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:29634662-29634300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 127
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:29763144-29762794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 127
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:31709533-31709171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:34683129-34683489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:36369759-36370121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:36906829-36907191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:37380319-37379958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 138
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:37735609-37735247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:38848352-38848714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:41067243-41066896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
209, 41
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:41488903-41488541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 253
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:48026501-48026141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 170
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:49221266-49221621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
176, 72
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:51166077-51166437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 47
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:51746451-51746094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 97
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:52822975-52823335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 29
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:53075637-53075998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 292
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:54136405-54136767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:54927686-54928048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:54930014-54930376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:54951889-54952251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:58199242-58198881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr5:59064676-59064315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr5:10066317-10066685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr5:59146610-59146242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 116
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr5:46735044-46735412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 133
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:1338688-1339061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:2917694-2917325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 24
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:10922078-10921706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:19978681-19979053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:24299246-24298875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:30582559-30582196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:32755218-32755583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
178, 60
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:46676846-46676474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:49117118-49117491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:49521932-49521571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 148
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:54785875-54786247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:55631297-55630925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:58770639-58771008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 116
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:64778768-64779146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr5:73485653-73486037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chr5:1383210-1382841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 49
               

               
Conread position:
               
5-370
               

               
Cow position:
               
chr5:46667307-46666935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 368
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chr5:10542443-10542816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
188, 117
               

               
Conread position:
               
5-433
               

               
Cow position:
               
chr5:5924744-5925163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
5-434
               

               
Cow position:
               
chr5:6151599-6152042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 270
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr5:7396476-7396043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
102, 67
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr5:12921630-12921190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
174, 29
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr5:18667540-18667099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 270
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr5:44709139-44709586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 394
               

               
Conread position:
               
5-438
               

               
Cow position:
               
chr5:10853601-10854039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
181, 241
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr5:21189451-21189011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 32
               

               
Conread position:
               
5-444
               

               
Cow position:
               
chr5:24101883-24101440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 384
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr5:14636346-14636802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 88
               

               
Conread position:
               
6-252
               

               
Cow position:
               
chr5:26073556-26073805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
177, 71
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr5:64061559-64061241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
124, 96
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chr5:18404826-18405180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
177, 41
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chr5:41951832-41952203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
171, 96
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chr5:58192147-58191788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
177, 20
               

               
Conread position:
               
6-375
               

               
Cow position:
               
chr5:3500896-3501274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
7-184
               

               
Cow position:
               
chr5:8529877-8529705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr5:1395231-1395459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
187, 158
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr5:27549283-27549594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
7-342
               

               
Cow position:
               
chr5:4328515-4328194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
129, 93
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chr5:4434273-4434633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chr5:46779746-46779387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 27
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chr5:46816872-46817231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 27
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chr5:29742330-29742696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 174
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chr5:47560330-47560700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr5:61330102-61330506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
7-442
               

               
Cow position:
               
chr5:72857105-72856664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 381
               

               
Conread position:
               
7-453
               

               
Cow position:
               
chr5:27195831-27196303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
116, 128
               

               
Conread position:
               
8-186
               

               
Cow position:
               
chr5:40357713-40357892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
8-359
               

               
Cow position:
               
chr5:6772796-6772439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr5:18250281-18249920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
174, 127
               

               
Conread position:
               
10-214
               

               
Cow position:
               
chr5:66278661-66278461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr5:23648199-23648496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
121, 233
               

               
Conread position:
               
10-328
               

               
Cow position:
               
chr5:1230034-1229706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
11-337
               

               
Cow position:
               
chr5:25901252-25901579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 20
               

               
Conread position:
               
11-359
               

               
Cow position:
               
chr5:17027295-17026949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 68
               

               
Conread position:
               
14-359
               

               
Cow position:
               
chr5:37626083-37625732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 118
               

               
Conread position:
               
15-337
               

               
Cow position:
               
chr5:11956275-11956599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
132, 33
               

               
Conread position:
               
15-359
               

               
Cow position:
               
chr5:13258815-13258473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
16-359
               

               
Cow position:
               
chr5:2203169-2203520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr5:46587785-46588075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
166, 101
               

               
Conread position:
               
17-368
               

               
Cow position:
               
chr5:48805240-48805589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
197, 147
               

               
Conread position:
               
20-355
               

               
Cow position:
               
chr5:47696986-47697321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
18, 240
               

               
Conread position:
               
25-355
               

               
Cow position:
               
chr5:48535061-48534731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 75
               

               
Conread position:
               
25-363
               

               
Cow position:
               
chr5:9091211-9091555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 152
               

               
Conread position:
               
26-252
               

               
Cow position:
               
chr5:58145502-58145726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
187, 28
               

               
Conread position:
               
26-359
               

               
Cow position:
               
chr5:57983643-57983972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
160, 15
               

               
Conread position:
               
26-436
               

               
Cow position:
               
chr5:4388388-4387975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
59, 66
               

               
Conread position:
               
27-326
               

               
Cow position:
               
chr5:59071832-59072138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
27-356
               

               
Cow position:
               
chr5:42283381-42283044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
28-366
               

               
Cow position:
               
chr5:23828982-23829311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
203, 74
               

               
Conread position:
               
29-317
               

               
Cow position:
               
chr5:70531259-70531547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
154, 12
               

               
Conread position:
               
31-271
               

               
Cow position:
               
chr5:38738236-38737991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
106, 45
               

               
Conread position:
               
31-366
               

               
Cow position:
               
chr5:46685415-46685750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
101, 39
               

               
Conread position:
               
37-359
               

               
Cow position:
               
chr5:28571744-28571419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
38-337
               

               
Cow position:
               
chr5:3251959-3252259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
138, 105
               

               
Conread position:
               
39-293
               

               
Cow position:
               
chr5:57935923-57936182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 242
               

               
Conread position:
               
43-364
               

               
Cow position:
               
chr5:65597620-65597297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 57
               

               
Conread position:
               
46-453
               

               
Cow position:
               
chr5:35446424-35446835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 121
               

               
Conread position:
               
48-359
               

               
Cow position:
               
chr5:69771253-69770952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
6, 142
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr5:10299657-10299339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr5:13630305-13630623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
53-245
               

               
Cow position:
               
chr5:12728975-12729173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
53-359
               

               
Cow position:
               
chr5:2695617-2695931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
54-354
               

               
Cow position:
               
chr5:3544492-3544184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
62-351
               

               
Cow position:
               
chr5:34196734-34196446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
159, 51
               

               
Conread position:
               
63-359
               

               
Cow position:
               
chr5:11358301-11357997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
63-359
               

               
Cow position:
               
chr5:30157535-30157231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
71-365
               

               
Cow position:
               
chr5:40346951-40347255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
72-359
               

               
Cow position:
               
chr5:52646401-52646681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
72-359
               

               
Cow position:
               
chr5:66910270-66909975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
73-359
               

               
Cow position:
               
chr5:38662497-38662203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
76-359
               

               
Cow position:
               
chr5:6986325-6986614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
76-359
               

               
Cow position:
               
chr5:50604192-50604478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
119, 142
               

               
Conread position:
               
78-319
               

               
Cow position:
               
chr5:14942656-14942903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
80-359
               

               
Cow position:
               
chr5:39216078-39216366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
84-304
               

               
Cow position:
               
chr5:54454533-54454317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
93-252
               

               
Cow position:
               
chr5:37608452-37608288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
104-354
               

               
Cow position:
               
chr5:54868163-54867907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
84, 191
               

               
Conread position:
               
104-359
               

               
Cow position:
               
chr5:50675453-50675716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
106-361
               

               
Cow position:
               
chr5:16127176-16126913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 46
               

               
Conread position:
               
148-359
               

               
Cow position:
               
chr5:54362388-54362169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
166-359
               

               
Cow position:
               
chr5:2699101-2699302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               
Show alignments to all cow chromosomes.