Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8054E11.3 | 
| Conread position: | 1-120 | 
| Cow position: | chr6:56842398-56842278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 1-121 | 
| Cow position: | chr6:2581979-2581859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1-124 | 
| Cow position: | chr6:61632509-61632386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1-131 | 
| Cow position: | chr6:58036657-58036528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 117, 0 | 
| Conread position: | 1-134 | 
| Cow position: | chr6:14064321-14064454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1-141 | 
| Cow position: | chr6:52001127-52000988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 90, 0 | 
| Conread position: | 1-149 | 
| Cow position: | chr6:27942205-27942057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1-152 | 
| Cow position: | chr6:34548409-34548259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 95, 0 | 
| Conread position: | 1-153 | 
| Cow position: | chr6:37761630-37761480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 101, 0 | 
| Conread position: | 1-159 | 
| Cow position: | chr6:10252580-10252423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 1-167 | 
| Cow position: | chr6:50526885-50526721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 133, 53 | 
| Conread position: | 1-168 | 
| Cow position: | chr6:53461803-53461970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 1-186 | 
| Cow position: | chr6:1109384-1109198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 145, 0 | 
| Conread position: | 1-186 | 
| Cow position: | chr6:5096432-5096614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 47, 100 | 
| Conread position: | 1-186 | 
| Cow position: | chr6:19044582-19044406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 101, 0 | 
| Conread position: | 1-186 | 
| Cow position: | chr6:65941633-65941817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 7, 144 | 
| Conread position: | 1-211 | 
| Cow position: | chr6:9322377-9322166 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 185, 74 | 
| Conread position: | 1-211 | 
| Cow position: | chr6:17344575-17344363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 1-213 | 
| Cow position: | chr6:44510462-44510251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 180, 36 | 
| Conread position: | 1-218 | 
| Cow position: | chr6:53742296-53742083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 192, 126 | 
| Conread position: | 1-225 | 
| Cow position: | chr6:51674142-51673921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 185, 76 | 
| Conread position: | 1-228 | 
| Cow position: | chr6:7216171-7215941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 182, 0 | 
| Conread position: | 1-234 | 
| Cow position: | chr6:44098081-44097845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 182, 68 | 
| Conread position: | 1-245 | 
| Cow position: | chr6:6278163-6277903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:6471560-6471809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 148, 74 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:21588360-21588108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 182, 0 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:33301044-33300789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 1-252 | 
| Cow position: | chr6:64252484-64252235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 146, 83 | 
| Conread position: | 1-264 | 
| Cow position: | chr6:24918249-24918499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 135, 88 | 
| Conread position: | 1-270 | 
| Cow position: | chr6:1274472-1274743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 49, 68 | 
| Conread position: | 1-271 | 
| Cow position: | chr6:29689234-29688966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 26, 94 | 
| Conread position: | 1-276 | 
| Cow position: | chr6:33896266-33896545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 22, 18 | 
| Conread position: | 1-282 | 
| Cow position: | chr6:7176192-7176475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 133, 90 | 
| Conread position: | 1-282 | 
| Cow position: | chr6:48947281-48947565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 181, 240 | 
| Conread position: | 1-282 | 
| Cow position: | chr6:53810957-53810682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 105, 29 | 
| Conread position: | 1-282 | 
| Cow position: | chr6:58595033-58595316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 182, 83 | 
| Conread position: | 1-297 | 
| Cow position: | chr6:25179809-25180107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 95 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:52557275-52557557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 0 | 
| Conread position: | 1-304 | 
| Cow position: | chr6:24623767-24624070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 101 | 
| Conread position: | 1-305 | 
| Cow position: | chr6:42988429-42988733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 179, 95 | 
| Conread position: | 1-305 | 
| Cow position: | chr6:59596621-59596308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 1-319 | 
| Cow position: | chr6:3119163-3119490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 152, 33 | 
| Conread position: | 1-319 | 
| Cow position: | chr6:6944571-6944887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 77 | 
| Conread position: | 1-319 | 
| Cow position: | chr6:38988449-38988759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 47, 33 | 
| Conread position: | 1-320 | 
| Cow position: | chr6:4274445-4274122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 101 | 
| Conread position: | 1-322 | 
| Cow position: | chr6:35704141-35704472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 154 | 
| Conread position: | 1-326 | 
| Cow position: | chr6:46283723-46284054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 182, 153 | 
| Conread position: | 1-335 | 
| Cow position: | chr6:32286927-32286590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 144 | 
| Conread position: | 1-335 | 
| Cow position: | chr6:43797522-43797871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 1-335 | 
| Cow position: | chr6:47614467-47614797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 165, 89 | 
| Conread position: | 1-335 | 
| Cow position: | chr6:62326646-62326310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 182, 46 | 
| Conread position: | 1-337 | 
| Cow position: | chr6:15261628-15261299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 125, 101 | 
| Conread position: | 1-339 | 
| Cow position: | chr6:34236719-34237059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 213, 191 | 
| Conread position: | 1-341 | 
| Cow position: | chr6:18987506-18987171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 213, 98 | 
| Conread position: | 1-342 | 
| Cow position: | chr6:7105158-7105498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 182, 23 | 
| Conread position: | 1-342 | 
| Cow position: | chr6:39136874-39136531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 57, 25 | 
| Conread position: | 1-346 | 
| Cow position: | chr6:15471437-15471785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 165, 203 | 
| Conread position: | 1-350 | 
| Cow position: | chr6:12535095-12534749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 176, 41 | 
| Conread position: | 1-350 | 
| Cow position: | chr6:33949784-33950142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 133, 41 | 
| Conread position: | 1-350 | 
| Cow position: | chr6:46633494-46633140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 84 | 
| Conread position: | 1-350 | 
| Cow position: | chr6:60167187-60167540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 187, 28 | 
| Conread position: | 1-353 | 
| Cow position: | chr6:47381059-47380682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-354 | 
| Cow position: | chr6:4903625-4903971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 62, 79 | 
| Conread position: | 1-354 | 
| Cow position: | chr6:6459487-6459129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 33, 104 | 
| Conread position: | 1-355 | 
| Cow position: | chr6:727253-727606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 137, 26 | 
| Conread position: | 1-355 | 
| Cow position: | chr6:10570513-10570882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 182, 144 | 
| Conread position: | 1-355 | 
| Cow position: | chr6:10650418-10650778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 136, 165 | 
| Conread position: | 1-355 | 
| Cow position: | chr6:34030631-34030301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 215, 25 | 
| Conread position: | 1-355 | 
| Cow position: | chr6:50637644-50637301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 75, 40 | 
| Conread position: | 1-356 | 
| Cow position: | chr6:6119618-6119974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 33 | 
| Conread position: | 1-356 | 
| Cow position: | chr6:14290138-14290482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 182, 72 | 
| Conread position: | 1-356 | 
| Cow position: | chr6:16675055-16674703 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 109, 48 | 
| Conread position: | 1-356 | 
| Cow position: | chr6:17556297-17556659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 192, 142 | 
| Conread position: | 1-356 | 
| Cow position: | chr6:47171438-47171095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 137, 101 | 
| Conread position: | 1-357 | 
| Cow position: | chr6:1096354-1096722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 40, 107 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:529517-529880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 187, 45 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:618788-618426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 167 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:3893262-3893632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 61, 31 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:4467999-4467621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 142, 214 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:9737882-9738243 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 33 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:10612206-10611837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 165, 33 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:12926949-12926583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 123 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:14950279-14950642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 63 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:24584022-24584369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 285, 142 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:24631875-24632237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 33 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:25783037-25783419 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:33508622-33508274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 48, 10 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:35416597-35416950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 165 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:35601054-35600689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 185, 101 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:35825419-35825079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 136, 99 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:49761840-49761473 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 182, 101 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:53935262-53935622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 145, 92 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:58880573-58880223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 136, 33 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:64426163-64425802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 75 | 
| Conread position: | 1-359 | 
| Cow position: | chr6:65049310-65049649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 349, 88 | 
| Conread position: | 1-362 | 
| Cow position: | chr6:11638830-11639187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 100, 88 | 
| Conread position: | 1-362 | 
| Cow position: | chr6:15181533-15181173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 133, 234 | 
| Conread position: | 1-362 | 
| Cow position: | chr6:16625156-16624783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 170 | 
| Conread position: | 1-362 | 
| Cow position: | chr6:16703369-16703736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 28 | 
| Conread position: | 1-363 | 
| Cow position: | chr6:27534416-27534798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 128, 0 | 
| Conread position: | 1-363 | 
| Cow position: | chr6:28481704-28481343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 135 | 
| Conread position: | 1-364 | 
| Cow position: | chr6:58605902-58605533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 185, 22 | 
| Conread position: | 1-365 | 
| Cow position: | chr6:15783616-15783972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 46, 165 | 
| Conread position: | 1-365 | 
| Cow position: | chr6:28549660-28550059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:2087899-2087524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 188, 0 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:2618190-2618560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 335 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:12514865-12514511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 179, 73 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:16766466-16766837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 122 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:22805464-22805838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 79, 54 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:30316569-30316941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 136, 33 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:50624807-50624427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 146, 121 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:52977792-52978156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 92 | 
| Conread position: | 1-367 | 
| Cow position: | chr6:13405596-13405230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 182, 10 | 
| Conread position: | 1-369 | 
| Cow position: | chr6:62000968-62001339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 182, 142 | 
| Conread position: | 1-370 | 
| Cow position: | chr6:27341971-27341601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 135, 92 | 
| Conread position: | 1-370 | 
| Cow position: | chr6:47574166-47573802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 159 | 
| Conread position: | 1-370 | 
| Cow position: | chr6:52249138-52249504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 0 | 
| Conread position: | 1-370 | 
| Cow position: | chr6:65868160-65867786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 169, 336 | 
| Conread position: | 1-373 | 
| Cow position: | chr6:14897556-14897181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 137, 101 | 
| Conread position: | 1-416 | 
| Cow position: | chr6:37386521-37386104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 110, 19 | 
| Conread position: | 1-444 | 
| Cow position: | chr6:50114053-50113609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 44 | 
| Conread position: | 1-447 | 
| Cow position: | chr6:49733161-49732720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 83, 63 | 
| Conread position: | 2-247 | 
| Cow position: | chr6:55386832-55386591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 181, 72 | 
| Conread position: | 2-248 | 
| Cow position: | chr6:14263882-14264130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 181, 52 | 
| Conread position: | 2-248 | 
| Cow position: | chr6:29484352-29484105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 134, 40 | 
| Conread position: | 2-294 | 
| Cow position: | chr6:28156895-28157187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 44, 69 | 
| Conread position: | 2-316 | 
| Cow position: | chr6:16410430-16410115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 183, 129 | 
| Conread position: | 2-336 | 
| Cow position: | chr6:13591686-13591349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 135, 14 | 
| Conread position: | 2-341 | 
| Cow position: | chr6:30491883-30492222 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 52, 89 | 
| Conread position: | 2-351 | 
| Cow position: | chr6:44950083-44950442 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 135, 258 | 
| Conread position: | 2-355 | 
| Cow position: | chr6:41556697-41556349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 36, 86 | 
| Conread position: | 2-359 | 
| Cow position: | chr6:6721348-6720981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 136, 84 | 
| Conread position: | 2-359 | 
| Cow position: | chr6:10236566-10236206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 25 | 
| Conread position: | 2-361 | 
| Cow position: | chr6:29085007-29085363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 181, 98 | 
| Conread position: | 2-366 | 
| Cow position: | chr6:14851374-14851743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 62 | 
| Conread position: | 2-370 | 
| Cow position: | chr6:47025433-47025039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 16, 391 | 
| Conread position: | 2-370 | 
| Cow position: | chr6:52189614-52189982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 134, 67 | 
| Conread position: | 2-370 | 
| Cow position: | chr6:55474681-55474306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 371 | 
| Conread position: | 2-454 | 
| Cow position: | chr6:10598376-10597919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 181, 102 | 
| Conread position: | 3-140 | 
| Cow position: | chr6:64888341-64888205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 3-193 | 
| Cow position: | chr6:50801265-50801454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 17, 71 | 
| Conread position: | 3-248 | 
| Cow position: | chr6:27365545-27365300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 166, 50 | 
| Conread position: | 3-276 | 
| Cow position: | chr6:17149793-17150077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 180, 273 | 
| Conread position: | 3-304 | 
| Cow position: | chr6:10681358-10681062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 183, 99 | 
| Conread position: | 3-336 | 
| Cow position: | chr6:10695095-10694748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 183, 42 | 
| Conread position: | 3-350 | 
| Cow position: | chr6:53672707-53672357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 140 | 
| Conread position: | 3-355 | 
| Cow position: | chr6:65847995-65848353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 34 | 
| Conread position: | 3-356 | 
| Cow position: | chr6:39957440-39957089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 180, 141 | 
| Conread position: | 3-359 | 
| Cow position: | chr6:50120556-50120916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 129, 99 | 
| Conread position: | 3-370 | 
| Cow position: | chr6:30076911-30077282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 180, 60 | 
| Conread position: | 4-207 | 
| Cow position: | chr6:12099877-12099681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 182, 99 | 
| Conread position: | 4-336 | 
| Cow position: | chr6:33984190-33983851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 135 | 
| Conread position: | 4-362 | 
| Cow position: | chr6:11353800-11354168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 108, 168 | 
| Conread position: | 4-365 | 
| Cow position: | chr6:34075245-34074872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 185 | 
| Conread position: | 5-101 | 
| Cow position: | chr6:39092989-39092893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 97 | 
| Alignm identity: | 83 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-115 | 
| Cow position: | chr6:34017350-34017460 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:1245549-1245660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:8382311-8382200 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:12971768-12971657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:17773358-17773247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:20216024-20216135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 88 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:39080289-39080178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:39897691-39897802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:42897559-42897448 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:57329650-57329539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr6:63714904-63715015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-130 | 
| Cow position: | chr6:10266755-10266880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-181 | 
| Cow position: | chr6:653425-653601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-184 | 
| Cow position: | chr6:20581404-20581583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-184 | 
| Cow position: | chr6:32664730-32664909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-184 | 
| Cow position: | chr6:48882119-48881940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-186 | 
| Cow position: | chr6:11389242-11389423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-186 | 
| Cow position: | chr6:41233295-41233116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 64, 0 | 
| Conread position: | 5-186 | 
| Cow position: | chr6:54887221-54887400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 5-203 | 
| Cow position: | chr6:3987684-3987885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-205 | 
| Cow position: | chr6:18912362-18912565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 118, 127 | 
| Conread position: | 5-205 | 
| Cow position: | chr6:28136123-28135921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 178, 69 | 
| Conread position: | 5-211 | 
| Cow position: | chr6:7448867-7448658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-213 | 
| Cow position: | chr6:2111028-2111238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 178, 96 | 
| Conread position: | 5-213 | 
| Cow position: | chr6:45901620-45901831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-213 | 
| Cow position: | chr6:46225590-46225801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 113, 127 | 
| Conread position: | 5-213 | 
| Cow position: | chr6:55361423-55361634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-234 | 
| Cow position: | chr6:508149-508384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 5-234 | 
| Cow position: | chr6:40251427-40251659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 181, 0 | 
| Conread position: | 5-248 | 
| Cow position: | chr6:1402187-1402433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 178, 160 | 
| Conread position: | 5-248 | 
| Cow position: | chr6:1406775-1407021 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 178, 160 | 
| Conread position: | 5-248 | 
| Cow position: | chr6:55903461-55903213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-251 | 
| Cow position: | chr6:43779064-43778827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 178, 18 | 
| Conread position: | 5-252 | 
| Cow position: | chr6:8754083-8754334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 118, 0 | 
| Conread position: | 5-252 | 
| Cow position: | chr6:45666558-45666807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 178, 133 | 
| Conread position: | 5-270 | 
| Cow position: | chr6:11401692-11401422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-270 | 
| Cow position: | chr6:56926105-56925834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-279 | 
| Cow position: | chr6:27094215-27094493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 178, 128 | 
| Conread position: | 5-279 | 
| Cow position: | chr6:52065749-52066028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-286 | 
| Cow position: | chr6:16645256-16644982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 178, 65 | 
| Conread position: | 5-304 | 
| Cow position: | chr6:18803687-18803990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 127 | 
| Conread position: | 5-304 | 
| Cow position: | chr6:35873360-35873661 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 178, 32 | 
| Conread position: | 5-319 | 
| Cow position: | chr6:28001024-28001339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 210, 177 | 
| Conread position: | 5-321 | 
| Cow position: | chr6:21163675-21163351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-322 | 
| Cow position: | chr6:53537448-53537124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-325 | 
| Cow position: | chr6:1834367-1834041 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-335 | 
| Cow position: | chr6:46764034-46764366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 138 | 
| Conread position: | 5-337 | 
| Cow position: | chr6:45736496-45736809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 305, 148 | 
| Conread position: | 5-354 | 
| Cow position: | chr6:15137801-15138158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 0 | 
| Conread position: | 5-354 | 
| Cow position: | chr6:34273498-34273849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 131, 72 | 
| Conread position: | 5-355 | 
| Cow position: | chr6:11289095-11289445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 124, 130 | 
| Conread position: | 5-355 | 
| Cow position: | chr6:28065362-28065005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 102 | 
| Conread position: | 5-355 | 
| Cow position: | chr6:67553604-67553246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-356 | 
| Cow position: | chr6:3272110-3272468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-356 | 
| Cow position: | chr6:6557333-6556974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-356 | 
| Cow position: | chr6:26324828-26325186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 0 | 
| Conread position: | 5-356 | 
| Cow position: | chr6:57857142-57856782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 141 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:126763-127122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 97 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:327990-328350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 330 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:843455-843818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:888929-888567 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:1796997-1796637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 160 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:2089647-2089293 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 32, 161 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:2875662-2876021 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 209, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:3152587-3152228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 178, 97 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:6034426-6034787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 97 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:6568859-6569208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 178, 236 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:7137970-7138330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 116 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:7467279-7467640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 18 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:9234883-9234522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:10044587-10044225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 270 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:11020030-11019667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:11168877-11168515 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 184, 14 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:11453495-11453858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 127 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:12662943-12663305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:12997791-12997431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 88 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:13308026-13308386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 155 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:14928823-14928469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 178, 64 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:16049921-16050280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 183, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:17111794-17112155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 63 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:17386895-17386533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:19103536-19103898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:19712873-19713224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 178, 112 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:21712078-21711714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:22043637-22043998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 103 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:22737334-22737697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:23568221-23568583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 127 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:23879685-23880046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 31, 43 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:26667653-26668014 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 12 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:26771750-26772111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 97 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:28102498-28102855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 40 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:28184947-28185320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 156, 164 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:31912803-31913165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:31941239-31940877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:33809062-33809424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:36230154-36230516 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:37387938-37387588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 209, 118 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:40278424-40278069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 178, 14 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:43038699-43039057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 209, 187 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:43087232-43087582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 178, 67 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:43621103-43620741 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:44146576-44146937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 18 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:45479716-45480078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:46948188-46947829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 97 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:47149600-47149959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 247 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:51150314-51149952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:51868359-51868005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 22, 30 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:53543111-53543473 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:55239062-55238706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 236 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:55593442-55593065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 182, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:56451723-56452085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:57521547-57521185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:60379535-60379173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:61829601-61829239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 127 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:62665147-62664785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 183, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:63177415-63177053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:65874912-65875270 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 134, 144 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:67173928-67173565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 86 | 
| Conread position: | 5-359 | 
| Cow position: | chr6:67448554-67448916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-363 | 
| Cow position: | chr6:33466329-33465964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 178, 78 | 
| Conread position: | 5-366 | 
| Cow position: | chr6:34843341-34843710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-366 | 
| Cow position: | chr6:36531646-36531276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-366 | 
| Cow position: | chr6:40550328-40550696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-366 | 
| Cow position: | chr6:50571563-50571194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-366 | 
| Cow position: | chr6:55538899-55539268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-367 | 
| Cow position: | chr6:27475778-27475414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 209, 140 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:478922-478550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 184, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:706370-705998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 228 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:1537077-1536705 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:2186410-2186782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:3886133-3886506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 244 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:5946403-5946775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:6182348-6182708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 178, 40 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:8205559-8205188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 148 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:11721836-11722196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 184, 238 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:15275868-15276240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:16593320-16592961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 209, 43 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:17049745-17049370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:17121761-17121388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 86, 57 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:21857000-21857364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 178, 113 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:24242659-24242290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:32420319-32419949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 16 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:34494047-34493675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:34504149-34504521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 239 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:39331161-39331531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:39999087-39999457 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 123, 131 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:40813733-40813365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 124, 65 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:41231859-41231488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 178, 49 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:44017456-44017828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:47039839-47040209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 29 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:50485412-50485773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 178, 241 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:51717926-51717555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 102 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:51733453-51733082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 204 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:60332716-60332343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 5-368 | 
| Cow position: | chr6:64719688-64719318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 178, 42 | 
| Conread position: | 5-369 | 
| Cow position: | chr6:45937651-45937299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 178, 116 | 
| Conread position: | 5-370 | 
| Cow position: | chr6:28160781-28160409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 368 | 
| Conread position: | 5-376 | 
| Cow position: | chr6:451891-452272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 0 | 
| Conread position: | 5-376 | 
| Cow position: | chr6:39912694-39912316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 260 | 
| Conread position: | 5-416 | 
| Cow position: | chr6:65819210-65819628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 113 | 
| Conread position: | 5-435 | 
| Cow position: | chr6:45975871-45975438 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 178, 405 | 
| Conread position: | 5-438 | 
| Cow position: | chr6:40863660-40864105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 43, 50 | 
| Conread position: | 5-442 | 
| Cow position: | chr6:30269530-30269974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 385 | 
| Conread position: | 6-206 | 
| Cow position: | chr6:20267945-20268144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 177, 39 | 
| Conread position: | 6-233 | 
| Cow position: | chr6:12388091-12388315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 176, 96 | 
| Conread position: | 6-304 | 
| Cow position: | chr6:25374737-25375040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 177, 0 | 
| Conread position: | 6-359 | 
| Cow position: | chr6:16418311-16418672 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 0 | 
| Conread position: | 6-359 | 
| Cow position: | chr6:42267099-42266749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 177, 82 | 
| Conread position: | 6-359 | 
| Cow position: | chr6:52900317-52899960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 177, 241 | 
| Conread position: | 6-368 | 
| Cow position: | chr6:3485048-3485418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 0 | 
| Conread position: | 6-368 | 
| Cow position: | chr6:20552872-20553240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 187, 69 | 
| Conread position: | 6-453 | 
| Cow position: | chr6:58031148-58030695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 235 | 
| Conread position: | 7-110 | 
| Cow position: | chr6:33451213-33451111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 104 | 
| Alignm identity: | 87 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 7-328 | 
| Cow position: | chr6:34405671-34405344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 199 | 
| Conread position: | 7-359 | 
| Cow position: | chr6:21832291-21832650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 176, 265 | 
| Conread position: | 7-359 | 
| Cow position: | chr6:38438976-38438616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 0 | 
| Conread position: | 7-359 | 
| Cow position: | chr6:41677298-41676944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 27 | 
| Conread position: | 7-359 | 
| Cow position: | chr6:68030549-68030189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 0 | 
| Conread position: | 7-366 | 
| Cow position: | chr6:27526593-27526960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 0 | 
| Conread position: | 7-366 | 
| Cow position: | chr6:28172277-28171914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 176, 63 | 
| Conread position: | 7-368 | 
| Cow position: | chr6:20451329-20450960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 47 | 
| Conread position: | 7-444 | 
| Cow position: | chr6:60876666-60876228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 238 | 
| Conread position: | 8-137 | 
| Cow position: | chr6:48825860-48825989 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 8-292 | 
| Cow position: | chr6:65909696-65909408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 93, 142 | 
| Conread position: | 8-326 | 
| Cow position: | chr6:27939403-27939079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 175, 0 | 
| Conread position: | 8-359 | 
| Cow position: | chr6:11869566-11869924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 28 | 
| Conread position: | 9-213 | 
| Cow position: | chr6:57383784-57383577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 174, 0 | 
| Conread position: | 9-252 | 
| Cow position: | chr6:45793101-45792854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 165, 67 | 
| Conread position: | 9-370 | 
| Cow position: | chr6:1498565-1498199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 7 | 
| Conread position: | 10-304 | 
| Cow position: | chr6:24126229-24126519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 91, 6 | 
| Conread position: | 10-359 | 
| Cow position: | chr6:3574153-3573806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 109 | 
| Conread position: | 10-359 | 
| Cow position: | chr6:19441577-19441216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 112, 79 | 
| Conread position: | 10-359 | 
| Cow position: | chr6:63406169-63405822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 68, 38 | 
| Conread position: | 11-359 | 
| Cow position: | chr6:27151075-27151431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 0 | 
| Conread position: | 11-359 | 
| Cow position: | chr6:41531959-41531590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 114, 78 | 
| Conread position: | 13-444 | 
| Cow position: | chr6:25357503-25357937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 89 | 
| Conread position: | 15-359 | 
| Cow position: | chr6:18962983-18963327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 164, 82 | 
| Conread position: | 20-366 | 
| Cow position: | chr6:41192682-41192329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 163, 49 | 
| Conread position: | 24-359 | 
| Cow position: | chr6:15480917-15480587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 156, 7 | 
| Conread position: | 25-354 | 
| Cow position: | chr6:12629247-12628917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 190, 12 | 
| Conread position: | 26-355 | 
| Cow position: | chr6:1104815-1105136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 75, 112 | 
| Conread position: | 26-359 | 
| Cow position: | chr6:6595773-6595433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 114, 36 | 
| Conread position: | 26-359 | 
| Cow position: | chr6:7112598-7112923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 165, 10 | 
| Conread position: | 27-307 | 
| Cow position: | chr6:49963602-49963888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 156, 0 | 
| Conread position: | 27-359 | 
| Cow position: | chr6:1507160-1507500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 156, 0 | 
| Conread position: | 27-359 | 
| Cow position: | chr6:66188450-66188790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 153, 0 | 
| Conread position: | 31-356 | 
| Cow position: | chr6:12352187-12351845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 66, 34 | 
| Conread position: | 37-248 | 
| Cow position: | chr6:32018774-32018988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 36, 204 | 
| Conread position: | 37-359 | 
| Cow position: | chr6:8633973-8634294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 8, 64 | 
| Conread position: | 37-359 | 
| Cow position: | chr6:58016689-58016366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 197, 162 | 
| Conread position: | 39-368 | 
| Cow position: | chr6:33489716-33490054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 144, 0 | 
| Conread position: | 49-298 | 
| Cow position: | chr6:19718913-19718659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 134, 0 | 
| Conread position: | 63-282 | 
| Cow position: | chr6:28399459-28399682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 86, 58 | 
| Conread position: | 63-355 | 
| Cow position: | chr6:2453160-2452861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 120, 261 | 
| Conread position: | 63-368 | 
| Cow position: | chr6:25790387-25790699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 123, 0 | 
| Conread position: | 71-359 | 
| Cow position: | chr6:18970136-18970425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 112, 28 | 
| Conread position: | 71-359 | 
| Cow position: | chr6:41408710-41408415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 123, 88 | 
| Conread position: | 72-359 | 
| Cow position: | chr6:43048890-43049185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 72-436 | 
| Cow position: | chr6:58072973-58072592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 39, 215 | 
| Conread position: | 73-359 | 
| Cow position: | chr6:20350785-20351079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 91-359 | 
| Cow position: | chr6:28488292-28488568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 32, 41 | 
| Conread position: | 91-359 | 
| Cow position: | chr6:67211308-67211578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 100, 16 | 
| Conread position: | 104-359 | 
| Cow position: | chr6:35883836-35883582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 111, 41 | 
| Conread position: | 107-308 | 
| Cow position: | chr6:12090702-12090903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 79, 62 | 
| Conread position: | 124-359 | 
| Cow position: | chr6:2581654-2581408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 11, 22 | 
| Conread position: | 147-368 | 
| Cow position: | chr6:8536065-8536295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 41, 155 | 
| Conread position: | 155-369 | 
| Cow position: | chr6:17595063-17595286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 158-359 | 
| Cow position: | chr6:28476289-28476081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 192-369 | 
| Cow position: | chr6:10266909-10267091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 23, 0 | 
Show alignments to all cow chromosomes.
