• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8054E11.3
        

               
Conread position:
               
1-87
               

               
Cow position:
               
chrX:35847438-35847352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
87
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chrX:11855378-11855260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-130
               

               
Cow position:
               
chrX:11819459-11819587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chrX:27704812-27704661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chrX:31372675-31372524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chrX:6543475-6543321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chrX:23969565-23969408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 33
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chrX:16021163-16021330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chrX:42466781-42466950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 142
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chrX:45042643-45042469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chrX:23317199-23317371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chrX:20790327-20790505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chrX:23415482-23415661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chrX:6766522-6766704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chrX:41527301-41527483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
168, 135
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chrX:1947737-1947913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chrX:10301344-10301159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chrX:28156745-28156568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chrX:40365532-40365719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chrX:8144668-8144850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
175, 44
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chrX:21063685-21063489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
185, 19
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chrX:12289934-12289741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chrX:39939540-39939744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:21662249-21662051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:33822304-33822098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 150
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chrX:9402531-9402742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
166, 34
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chrX:17794064-17793858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chrX:21626487-21626699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
192, 96
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chrX:25405159-25405371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
146, 142
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chrX:150684-150478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
182, 53
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chrX:15993657-15993443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
182, 125
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chrX:28866799-28867018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chrX:37118123-37117906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chrX:2293387-2293615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chrX:38218190-38217963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
105, 165
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chrX:41733977-41734213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:22125642-22125890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chrX:22308364-22308605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
185, 58
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chrX:33803782-33804027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
182, 115
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chrX:24280133-24279874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chrX:29700730-29700984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chrX:44901350-44901091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
181, 68
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chrX:40184286-40184009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
135, 145
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chrX:1056173-1056460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chrX:40560328-40560608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
182, 41
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chrX:15306659-15306946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
92, 69
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chrX:27450836-27451118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
182, 126
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chrX:35024273-35023983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
182, 58
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chrX:22118281-22118583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chrX:12310176-12310479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
185, 144
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chrX:41791502-41791813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chrX:4482171-4481887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chrX:36839919-36839619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
135, 84
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:31261419-31261739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 144
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:19211877-19212200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 68
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chrX:39352408-39352725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
212, 69
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chrX:38852374-38852047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:18244198-18243876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
44, 49
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:27629066-27628719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:620051-620388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
185, 217
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:20675081-20674740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:30681291-30681626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 135
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:34993389-34993061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 30
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:40693516-40693859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 146
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:2271832-2271491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 170
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:16702884-16702542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:16711169-16710827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:17610242-17610580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
146, 142
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chrX:20362928-20363278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chrX:24309887-24310240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
182, 142
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chrX:1793976-1794326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chrX:16782493-16782137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 285
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chrX:17891759-17891395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 268
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chrX:26508440-26508086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 77
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chrX:42222560-42222915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 120
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chrX:47380287-47380660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chrX:22819291-22818924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 254
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chrX:34442229-34442578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chrX:31728676-31728315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 36
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:2300095-2299741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 86
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:2382681-2382313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:4407096-4406732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:4767903-4767546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 33
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:6201739-6201380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 28
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:6235643-6235999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 24
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:10412762-10413127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 265
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:10866656-10867009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 77
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:13178395-13178759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 92
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:15151462-15151817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
186, 100
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:16325314-16325677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:17889647-17890004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:19398991-19398625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:20503853-20503490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 74
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:20733786-20733420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
165, 48
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:20999064-20999421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 53
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:23221830-23222179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
136, 33
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:25817608-25817970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 109
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:26622609-26622958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 28
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:29288206-29287845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:29766211-29765847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
177, 101
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:30089833-30090195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 126
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:30136656-30137010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:33583907-33583540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:35287638-35287272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 19
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:35937863-35938218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 92
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:38228103-38228463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
28, 146
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:39697976-39697615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 99
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:40070398-40070753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 34
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:43075096-43074730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 352
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:44193227-44193589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 50
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chrX:17663703-17664071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 164
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:41847317-41847688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:3582152-3581776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:15140323-15140690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 101
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:20652626-20652259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
146, 113
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:25282280-25282654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 247
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chrX:23314600-23314964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
162, 15
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chrX:27977621-27977994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chrX:28647057-28647431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
187, 86
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chrX:30165449-30165823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 256
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chrX:25451549-25451174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 82
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:6279390-6279766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 136
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:7277156-7276801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
182, 33
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:11990937-11991306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
86, 68
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:23218282-23217920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
214, 29
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chrX:5649190-5649568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
174, 69
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:40496375-40496743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
194, 42
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:26447292-26446931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
182, 46
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:27071058-27070665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
194, 67
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chrX:5070367-5070747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
97, 138
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:45373895-45374275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
182, 144
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chrX:23341778-23342222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 388
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chrX:16035301-16035743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
135, 71
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chrX:28133310-28132865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
182, 74
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chrX:3406129-3406558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 85
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chrX:36692043-36691608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
233, 50
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chrX:21254991-21254785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chrX:3144841-3144627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
135, 144
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chrX:18455558-18455801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chrX:10440614-10440874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
2-292
               

               
Cow position:
               
chrX:13430577-13430869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
94, 146
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chrX:34221977-34221650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
99, 190
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chrX:19878028-19877716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chrX:28633254-28633583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
181, 67
               

               
Conread position:
               
2-348
               

               
Cow position:
               
chrX:6406566-6406215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 164
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chrX:24174741-24175093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 87
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chrX:18247565-18247204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 10
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chrX:20800995-20800641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chrX:1617022-1617378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 173
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chrX:4326470-4326843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chrX:32329420-32329050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 94
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chrX:24109392-24109755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chrX:29790607-29790975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
187, 10
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chrX:13069531-13069900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
192, 100
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chrX:13090092-13090461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
192, 100
               

               
Conread position:
               
2-391
               

               
Cow position:
               
chrX:26436939-26436547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
181, 107
               

               
Conread position:
               
2-436
               

               
Cow position:
               
chrX:28557573-28557138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
2-444
               

               
Cow position:
               
chrX:2008491-2008935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 32
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chrX:19929646-19929457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 152
               

               
Conread position:
               
3-316
               

               
Cow position:
               
chrX:3396797-3397100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
171, 97
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chrX:20792347-20792033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
139, 22
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chrX:3155374-3155710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:11744478-11744121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 90
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chrX:21592502-21592140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 98
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chrX:22538822-22539187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chrX:24317033-24316663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chrX:27754639-27754275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chrX:38999042-38998688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 26
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chrX:41884967-41885330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chrX:158820-158617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chrX:27983143-27983506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
89, 85
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chrX:30060097-30059733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
179, 256
               

               
Conread position:
               
5-112
               

               
Cow position:
               
chrX:15091555-15091662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-115
               

               
Cow position:
               
chrX:34518935-34518825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chrX:11566123-11566012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chrX:13031002-13031113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chrX:27750457-27750346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chrX:28313634-28313523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chrX:36479426-36479537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-119
               

               
Cow position:
               
chrX:2159974-2159860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-119
               

               
Cow position:
               
chrX:45236675-45236561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-127
               

               
Cow position:
               
chrX:18898440-18898562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-129
               

               
Cow position:
               
chrX:39293009-39293133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-143
               

               
Cow position:
               
chrX:19109832-19109968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
5-164
               

               
Cow position:
               
chrX:5124150-5124309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-174
               

               
Cow position:
               
chrX:35240081-35239912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:5392366-5392547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:30196507-30196326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:37134424-37134605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-187
               

               
Cow position:
               
chrX:3827876-3827696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chrX:38330591-38330396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chrX:12651611-12651820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chrX:39730930-39731140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chrX:12465241-12465017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 50
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chrX:13206161-13205930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
178, 18
               

               
Conread position:
               
5-242
               

               
Cow position:
               
chrX:12178888-12178641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chrX:13031443-13031688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chrX:33763354-33763103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chrX:3417927-3418179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
113, 127
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chrX:9763862-9764114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chrX:15039860-15040105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chrX:22838481-22838229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
134, 141
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chrX:22887869-22887619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
178, 53
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chrX:25573561-25573310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chrX:30159781-30160032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chrX:32584722-32584973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
178, 119
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chrX:27095338-27095092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
153, 102
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chrX:2486423-2486678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
113, 122
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chrX:38150897-38150632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chrX:28058531-28058263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chrX:3464868-3465135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
178, 43
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chrX:12346105-12345835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chrX:39185382-39185112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chrX:15175343-15175615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
179, 52
               

               
Conread position:
               
5-288
               

               
Cow position:
               
chrX:16046356-16046073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
182, 203
               

               
Conread position:
               
5-297
               

               
Cow position:
               
chrX:5280645-5280940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chrX:40225031-40225323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
183, 97
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chrX:5427469-5427181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
210, 172
               

               
Conread position:
               
5-303
               

               
Cow position:
               
chrX:28503545-28503242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chrX:26760359-26760663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chrX:46296870-46296567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chrX:33685340-33685023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chrX:37404025-37404337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
178, 98
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chrX:17290389-17290073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
178, 116
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chrX:17994668-17994351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
144, 116
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chrX:10059674-10059353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
178, 201
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chrX:8590791-8590462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chrX:5334606-5334933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
5-337
               

               
Cow position:
               
chrX:27590821-27591152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 97
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chrX:32643695-32643352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chrX:25289470-25289821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chrX:11499567-11499917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chrX:34761275-34760918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chrX:6581144-6580786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chrX:31495945-31495588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 78
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chrX:18023783-18024142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chrX:21389787-21389428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chrX:21415076-21414717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chrX:28753127-28753486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chrX:36195301-36194946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
183, 52
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:671784-672144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 273
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:2559751-2560110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 236
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:3081922-3082286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
170, 72
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:3361030-3360669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 245
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:3372644-3373005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:4622744-4623106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:5289477-5289837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
178, 43
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:5320508-5320866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
178, 65
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:5332224-5332584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:5361219-5360857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:5646895-5647257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:5866355-5865993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:6372389-6372027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:6453906-6453545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 261
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:6870355-6870715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 242
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:7120816-7120454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:7485016-7484654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:8640997-8640635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:9011540-9011178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:9128265-9127902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:9169405-9169758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
178, 73
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:10445206-10445566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 271
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:11146124-11146487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:11409125-11409487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:11461787-11462146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
178, 91
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:11976237-11976599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 165
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:12145311-12144946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:12307553-12307915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:12360097-12359732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:14049985-14050346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 107
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:14125035-14125398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:14462523-14462168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 7
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:14598055-14597704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
177, 284
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:14782136-14782498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:14801610-14801972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:15260410-15260768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 194
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:15977744-15978104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 116
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:16085449-16085811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:16278861-16278503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
118, 95
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:16359798-16360160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:16465510-16465154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 97
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:16803658-16804019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 116
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:16808605-16808966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 116
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:17054778-17054415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:17782709-17782348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 352
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:18222622-18222260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 56
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:18488505-18488867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:18656596-18656958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:19608885-19608523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:20020788-20020419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
178, 160
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:20356786-20357152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:21685828-21685468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 271
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:22077133-22077493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:22564478-22564837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
103, 37
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:22612612-22612248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:23572607-23572970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:24346258-24345896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:24467915-24468276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 72
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:24483158-24483515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:26230549-26230911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:26275347-26274986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 52
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:26531182-26530820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:26618333-26617971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 112
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:27305138-27304778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 273
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:27498038-27497679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 314
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:27616021-27615660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 159
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:27758917-27758556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 11
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:28588180-28587830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
87, 283
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:29083276-29082919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
178, 234
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:29225687-29225325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:29907993-29908355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:29912548-29912188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 127
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:30053259-30053621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:30164029-30164389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
178, 234
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:30172497-30172859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 254
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:30199783-30200145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:30455412-30455768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 97
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:30964777-30965139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:31978632-31978992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 170
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:34094915-34094553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:35533063-35532703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:36535522-36535882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:36729593-36729231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:37080309-37080667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 116
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:37852345-37851985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 266
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:38231058-38231420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:38961641-38962003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:39548608-39548246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:39560450-39560813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chrX:39713760-39713398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 270
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chrX:28518511-28518871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 250
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chrX:29892296-29891942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
177, 213
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chrX:1550174-1549805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chrX:2479415-2479788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chrX:9095851-9095483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
178, 18
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chrX:9899134-9899496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 54
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chrX:22493240-22492875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 160
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chrX:28624552-28624914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chrX:41156520-41156152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 168
               

               
Conread position:
               
5-367
               

               
Cow position:
               
chrX:29880071-29880440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 132
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:2579628-2579258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 284
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:4905781-4906150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 18
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:5354094-5354463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 60
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:5375068-5375439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 270
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:13406077-13406449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:13928533-13928905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:16086914-16087286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 118
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:18193899-18193527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:21226686-21226318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
178, 96
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:21582652-21582279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:22811099-22810732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
178, 237
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:23022522-23022155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
184, 97
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:23038776-23039145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:23280233-23279864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 196
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:23387329-23387698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
178, 133
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:24588527-24588897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:26755433-26755802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 64
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:27318440-27318068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:29916136-29916509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 254
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:30180715-30181087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:31202050-31201678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chrX:2103614-2103241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chrX:3649614-3649988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chrX:10528577-10528946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
78, 60
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chrX:24769648-24770018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 18
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chrX:21343604-21343226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 322
               

               
Conread position:
               
5-395
               

               
Cow position:
               
chrX:7551592-7551990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 384
               

               
Conread position:
               
5-415
               

               
Cow position:
               
chrX:16525999-16525584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 284
               

               
Conread position:
               
5-433
               

               
Cow position:
               
chrX:15621323-15621759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 18
               

               
Conread position:
               
5-433
               

               
Cow position:
               
chrX:27423074-27423498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
178, 88
               

               
Conread position:
               
5-433
               

               
Cow position:
               
chrX:29759897-29759473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
183, 160
               

               
Conread position:
               
5-433
               

               
Cow position:
               
chrX:32063958-32064395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 383
               

               
Conread position:
               
5-435
               

               
Cow position:
               
chrX:21768013-21767570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 387
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chrX:5248596-5248159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
94, 150
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chrX:18950527-18950965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 384
               

               
Conread position:
               
5-438
               

               
Cow position:
               
chrX:2048321-2047878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
127, 107
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chrX:7755114-7754672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 18
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chrX:23395816-23395373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 384
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chrX:30228904-30229345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 382
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chrX:5365385-5365839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
164, 246
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chrX:23986459-23986002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 272
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chrX:30836596-30836139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 383
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chrX:21818262-21818602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
201, 28
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chrX:26442040-26442399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
38, 129
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chrX:2813274-2813628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
177, 300
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chrX:4342959-4342599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chrX:8434994-8435351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
177, 137
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chrX:9642224-9642581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 321
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chrX:22579180-22579535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
177, 10
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chrX:42733080-42732719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
6-368
               

               
Cow position:
               
chrX:7096666-7096296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 96
               

               
Conread position:
               
6-368
               

               
Cow position:
               
chrX:21833092-21832723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 117
               

               
Conread position:
               
6-369
               

               
Cow position:
               
chrX:21793798-21793426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
6-438
               

               
Cow position:
               
chrX:16040471-16040913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 115
               

               
Conread position:
               
7-279
               

               
Cow position:
               
chrX:9261614-9261344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
129, 72
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chrX:47000446-47000748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 110
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chrX:8482654-8482295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chrX:23134795-23134444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
87, 9
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chrX:45400813-45401155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
247, 57
               

               
Conread position:
               
7-366
               

               
Cow position:
               
chrX:323121-322756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 241
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chrX:15121954-15122323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chrX:23452238-23452610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 128
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chrX:29099624-29099256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
7-436
               

               
Cow position:
               
chrX:20953740-20953304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 235
               

               
Conread position:
               
8-119
               

               
Cow position:
               
chrX:20580499-20580388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-368
               

               
Cow position:
               
chrX:24292457-24292829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
9-214
               

               
Cow position:
               
chrX:30135137-30135345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chrX:22870024-22869656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
9-436
               

               
Cow position:
               
chrX:7572596-7572158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 380
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chrX:2500426-2500691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
12-307
               

               
Cow position:
               
chrX:5841514-5841216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
14-359
               

               
Cow position:
               
chrX:2185428-2185081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
33, 232
               

               
Conread position:
               
15-356
               

               
Cow position:
               
chrX:6044261-6044600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 150
               

               
Conread position:
               
18-351
               

               
Cow position:
               
chrX:17229160-17228830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
99, 84
               

               
Conread position:
               
25-359
               

               
Cow position:
               
chrX:40827922-40828256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
113, 77
               

               
Conread position:
               
27-355
               

               
Cow position:
               
chrX:24321440-24321777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
31-348
               

               
Cow position:
               
chrX:29930209-29930534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
31-359
               

               
Cow position:
               
chrX:16046156-16045819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
152, 235
               

               
Conread position:
               
31-426
               

               
Cow position:
               
chrX:6854540-6854933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
183, 27
               

               
Conread position:
               
36-376
               

               
Cow position:
               
chrX:11074007-11074333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
150, 61
               

               
Conread position:
               
39-359
               

               
Cow position:
               
chrX:12996735-12997063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
39-359
               

               
Cow position:
               
chrX:19473973-19474301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
39-366
               

               
Cow position:
               
chrX:32145080-32145416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
45-290
               

               
Cow position:
               
chrX:29047284-29047034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
46-362
               

               
Cow position:
               
chrX:10438739-10439064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
49-233
               

               
Cow position:
               
chrX:44053982-44053793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chrX:9227737-9228054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chrX:24447119-24446801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chrX:30435452-30435771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chrX:24462279-24462594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
139, 31
               

               
Conread position:
               
49-435
               

               
Cow position:
               
chrX:20742018-20741625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
134, 340
               

               
Conread position:
               
54-368
               

               
Cow position:
               
chrX:16854205-16854528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
54-453
               

               
Cow position:
               
chrX:6655860-6656265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 82
               

               
Conread position:
               
71-359
               

               
Cow position:
               
chrX:22616224-22616524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 182
               

               
Conread position:
               
71-359
               

               
Cow position:
               
chrX:29779586-29779867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
145, 58
               

               
Conread position:
               
72-359
               

               
Cow position:
               
chrX:21892650-21892355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
72-433
               

               
Cow position:
               
chrX:24734803-24734436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
111, 73
               

               
Conread position:
               
77-359
               

               
Cow position:
               
chrX:8104370-8104659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
80-359
               

               
Cow position:
               
chrX:27595092-27595378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
103, 216
               

               
Conread position:
               
90-270
               

               
Cow position:
               
chrX:9911539-9911356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
90-336
               

               
Cow position:
               
chrX:9837039-9836788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
48, 124
               

               
Conread position:
               
90-420
               

               
Cow position:
               
chrX:9535667-9535327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 286
               

               
Conread position:
               
94-359
               

               
Cow position:
               
chrX:29170661-29170934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
104-322
               

               
Cow position:
               
chrX:21500816-21500601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
107-355
               

               
Cow position:
               
chrX:34008876-34008633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
118-370
               

               
Cow position:
               
chrX:4558416-4558163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
63, 179
               

               
Conread position:
               
126-359
               

               
Cow position:
               
chrX:13415356-13415595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
147-370
               

               
Cow position:
               
chrX:24443988-24444218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 224
               

               
Conread position:
               
155-359
               

               
Cow position:
               
chrX:38587855-38588067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
159-365
               

               
Cow position:
               
chrX:16024125-16023915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
161-355
               

               
Cow position:
               
chrX:31964979-31964788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
183-359
               

               
Cow position:
               
chrX:24260346-24260527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
189-359
               

               
Cow position:
               
chrX:43436877-43437052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
238-355
               

               
Cow position:
               
chrX:13282438-13282319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               
Show alignments to all cow chromosomes.