Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8055B16.3
        

               Conread position:
               122-563
               

               Cow position:
               chr1:52052951-52052531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 35
               

               Conread position:
               122-563
               

               Cow position:
               chr1:92010063-92010499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               54, 161
               

               Conread position:
               125-563
               

               Cow position:
               chr1:69415965-69415527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               310
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               51, 149
               

               Conread position:
               126-380
               

               Cow position:
               chr1:41004612-41004354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               51, 31
               

               Conread position:
               126-476
               

               Cow position:
               chr1:51531528-51531851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 31
               

               Conread position:
               126-497
               

               Cow position:
               chr1:89076882-89076511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 60
               

               Conread position:
               128-504
               

               Cow position:
               chr1:43389291-43388923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               266
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               48, 29
               

               Conread position:
               128-562
               

               Cow position:
               chr1:70227948-70227490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               310
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               12, 63
               

               Conread position:
               129-445
               

               Cow position:
               chr1:79278684-79278377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               195, 28
               

               Conread position:
               129-541
               

               Cow position:
               chr1:49433507-49433084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 28
               

               Conread position:
               131-563
               

               Cow position:
               chr1:45555127-45555567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 9
               

               Conread position:
               133-441
               

               Cow position:
               chr1:1916472-1916162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               40, 14
               

               Conread position:
               133-456
               

               Cow position:
               chr1:91800844-91800520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               43, 24
               

               Conread position:
               133-458
               

               Cow position:
               chr1:3429747-3429427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               36, 24
               

               Conread position:
               133-562
               

               Cow position:
               chr1:84282825-84283272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               300
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               43, 107
               

               Conread position:
               134-421
               

               Cow position:
               chr1:68995932-68996227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               12, 216
               

               Conread position:
               135-460
               

               Cow position:
               chr1:72103611-72103934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               41, 28
               

               Conread position:
               136-410
               

               Cow position:
               chr1:4573285-4573554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               40, 21
               

               Conread position:
               136-432
               

               Cow position:
               chr1:43448061-43447771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               8, 85
               

               Conread position:
               136-460
               

               Cow position:
               chr1:11772316-11772002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               40, 21
               

               Conread position:
               136-476
               

               Cow position:
               chr1:30413350-30413689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               27, 102
               

               Conread position:
               136-510
               

               Cow position:
               chr1:47233711-47233343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               37, 83
               

               Conread position:
               136-555
               

               Cow position:
               chr1:70434757-70435180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 142
               

               Conread position:
               136-562
               

               Cow position:
               chr1:1877791-1878224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 102
               

               Conread position:
               136-562
               

               Cow position:
               chr1:22628874-22628455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               307
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               40, 63
               

               Conread position:
               136-562
               

               Cow position:
               chr1:23488748-23488302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               301
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               38, 25
               

               Conread position:
               137-326
               

               Cow position:
               chr1:64160106-64160288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               38, 10
               

               Conread position:
               137-344
               

               Cow position:
               chr1:98708207-98708410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               40, 94
               

               Conread position:
               137-392
               

               Cow position:
               chr1:63905709-63905456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               39, 62
               

               Conread position:
               137-482
               

               Cow position:
               chr1:81355938-81355596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 10
               

               Conread position:
               137-486
               

               Cow position:
               chr1:80899873-80900230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               137-502
               

               Cow position:
               chr1:4027626-4027990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 134
               

               Conread position:
               137-504
               

               Cow position:
               chr1:40531344-40530973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               274
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               39, 31
               

               Conread position:
               137-510
               

               Cow position:
               chr1:53671984-53671615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               137-555
               

               Cow position:
               chr1:19145153-19144741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               137-562
               

               Cow position:
               chr1:18937069-18936636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 141
               

               Conread position:
               137-562
               

               Cow position:
               chr1:53374200-53374628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 83
               

               Conread position:
               137-562
               

               Cow position:
               chr1:72035164-72034727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 140
               

               Conread position:
               137-562
               

               Cow position:
               chr1:81515004-81515440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 153
               

               Conread position:
               137-563
               

               Cow position:
               chr1:28176765-28177182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 20
               

               Conread position:
               137-564
               

               Cow position:
               chr1:100551735-100552169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 71
               

               Conread position:
               138-419
               

               Cow position:
               chr1:56719082-56719345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               17, 133
               

               Conread position:
               138-441
               

               Cow position:
               chr1:42053558-42053260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               39, 84
               

               Conread position:
               138-493
               

               Cow position:
               chr1:21460634-21460988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               138-562
               

               Cow position:
               chr1:16767318-16766885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 19
               

               Conread position:
               139-392
               

               Cow position:
               chr1:15311636-15311881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               32, 18
               

               Conread position:
               139-399
               

               Cow position:
               chr1:71818694-71818439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               38, 19
               

               Conread position:
               139-417
               

               Cow position:
               chr1:73561882-73561606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               139-465
               

               Cow position:
               chr1:85596711-85597027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               139-485
               

               Cow position:
               chr1:45289105-45288762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               139-488
               

               Cow position:
               chr1:46693888-46693542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               243
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               139-491
               

               Cow position:
               chr1:53495230-53495577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 40
               

               Conread position:
               139-500
               

               Cow position:
               chr1:39069183-39068831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               139-504
               

               Cow position:
               chr1:42360033-42360417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 182
               

               Conread position:
               139-504
               

               Cow position:
               chr1:49839274-49839613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               271
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               35, 84
               

               Conread position:
               139-504
               

               Cow position:
               chr1:71253787-71253427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               139-504
               

               Cow position:
               chr1:74822219-74822580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               256
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               139-510
               

               Cow position:
               chr1:21092859-21093251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               139-510
               

               Cow position:
               chr1:21835716-21836068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               139-510
               

               Cow position:
               chr1:53458473-53458830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               37, 81
               

               Conread position:
               139-555
               

               Cow position:
               chr1:25793672-25793264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               276
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               37, 151
               

               Conread position:
               139-559
               

               Cow position:
               chr1:19516638-19516211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               291
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               38, 58
               

               Conread position:
               139-561
               

               Cow position:
               chr1:48580898-48581317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 102
               

               Conread position:
               139-562
               

               Cow position:
               chr1:1956561-1956137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 81
               

               Conread position:
               139-562
               

               Cow position:
               chr1:12222837-12222403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               306
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               34, 21
               

               Conread position:
               139-562
               

               Cow position:
               chr1:12871239-12870809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               311
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               139-562
               

               Cow position:
               chr1:19482306-19481899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               298
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               36, 75
               

               Conread position:
               139-562
               

               Cow position:
               chr1:21787094-21787525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               139-562
               

               Cow position:
               chr1:42138633-42139040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 61
               

               Conread position:
               139-562
               

               Cow position:
               chr1:51769853-51770283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               298
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               34, 23
               

               Conread position:
               139-562
               

               Cow position:
               chr1:55229752-55230174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               139-562
               

               Cow position:
               chr1:61564559-61564982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               292
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               35, 139
               

               Conread position:
               139-562
               

               Cow position:
               chr1:72304603-72304201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               38, 19
               

               Conread position:
               139-563
               

               Cow position:
               chr1:46940094-46939675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               290
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               38, 19
               

               Conread position:
               139-564
               

               Cow position:
               chr1:46218351-46218753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               140-349
               

               Cow position:
               chr1:20422436-20422230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               140-419
               

               Cow position:
               chr1:31235163-31234888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               207
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               36, 18
               

               Conread position:
               140-491
               

               Cow position:
               chr1:73761584-73761245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               36, 80
               

               Conread position:
               140-500
               

               Cow position:
               chr1:49795772-49796118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               253
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               36, 131
               

               Conread position:
               140-507
               

               Cow position:
               chr1:98360641-98360272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 255
               

               Conread position:
               140-555
               

               Cow position:
               chr1:54258335-54258763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 80
               

               Conread position:
               140-562
               

               Cow position:
               chr1:52496547-52496969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               310
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               14, 82
               

               Conread position:
               141-386
               

               Cow position:
               chr1:4293829-4294069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               14, 84
               

               Conread position:
               141-393
               

               Cow position:
               chr1:68282565-68282811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               35, 133
               

               Conread position:
               141-443
               

               Cow position:
               chr1:1991656-1991351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 128
               

               Conread position:
               141-476
               

               Cow position:
               chr1:56634868-56635198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               141-492
               

               Cow position:
               chr1:93810210-93810546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               257
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               35, 87
               

               Conread position:
               141-510
               

               Cow position:
               chr1:89381047-89381410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               260
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               97, 36
               

               Conread position:
               141-562
               

               Cow position:
               chr1:20000980-20000555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 45
               

               Conread position:
               141-562
               

               Cow position:
               chr1:31934284-31934705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 15
               

               Conread position:
               141-562
               

               Cow position:
               chr1:41181612-41182037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 57
               

               Conread position:
               141-562
               

               Cow position:
               chr1:78091804-78092241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               297
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               14, 76
               

               Conread position:
               142-364
               

               Cow position:
               chr1:57698684-57698455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               36, 150
               

               Conread position:
               142-369
               

               Cow position:
               chr1:95327382-95327161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               142-387
               

               Cow position:
               chr1:11873586-11873348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               33, 16
               

               Conread position:
               142-438
               

               Cow position:
               chr1:57396157-57395874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               223
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               34, 68
               

               Conread position:
               142-497
               

               Cow position:
               chr1:88618363-88618718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 122
               

               Conread position:
               142-504
               

               Cow position:
               chr1:101822728-101822386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               32, 82
               

               Conread position:
               142-539
               

               Cow position:
               chr1:4290928-4291329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 78
               

               Conread position:
               142-539
               

               Cow position:
               chr1:89937591-89937203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               280
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               33, 130
               

               Conread position:
               142-562
               

               Cow position:
               chr1:54478094-54478517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 68
               

               Conread position:
               142-562
               

               Cow position:
               chr1:64804337-64803896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 15
               

               Conread position:
               142-564
               

               Cow position:
               chr1:79165321-79164879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 131
               

               Conread position:
               142-564
               

               Cow position:
               chr1:81613156-81613581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 15
               

               Conread position:
               143-322
               

               Cow position:
               chr1:99118156-99118333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               33, 131
               

               Conread position:
               143-326
               

               Cow position:
               chr1:4026955-4027140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               33, 25
               

               Conread position:
               143-326
               

               Cow position:
               chr1:29671753-29671574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               32, 87
               

               Conread position:
               143-334
               

               Cow position:
               chr1:71325476-71325288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               34, 85
               

               Conread position:
               143-340
               

               Cow position:
               chr1:97806563-97806754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               93, 34
               

               Conread position:
               143-343
               

               Cow position:
               chr1:20799643-20799854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               33, 136
               

               Conread position:
               143-380
               

               Cow position:
               chr1:12596130-12595895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               34, 76
               

               Conread position:
               143-386
               

               Cow position:
               chr1:75967207-75967443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               32, 68
               

               Conread position:
               143-392
               

               Cow position:
               chr1:3776843-3776601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               143-392
               

               Cow position:
               chr1:44836458-44836205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               33, 15
               

               Conread position:
               143-392
               

               Cow position:
               chr1:61725342-61725096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               34, 132
               

               Conread position:
               143-392
               

               Cow position:
               chr1:82861545-82861799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               33, 128
               

               Conread position:
               143-392
               

               Cow position:
               chr1:98380805-98380561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               33, 14
               

               Conread position:
               143-398
               

               Cow position:
               chr1:58419703-58419961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               32, 57
               

               Conread position:
               143-401
               

               Cow position:
               chr1:79663895-79663648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               33, 136
               

               Conread position:
               143-406
               

               Cow position:
               chr1:32244627-32244363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               92, 17
               

               Conread position:
               143-408
               

               Cow position:
               chr1:101547271-101546994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               143-412
               

               Cow position:
               chr1:57264215-57263956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               33, 15
               

               Conread position:
               143-416
               

               Cow position:
               chr1:43839299-43839569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               33, 14
               

               Conread position:
               143-419
               

               Cow position:
               chr1:43380258-43379981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               33, 53
               

               Conread position:
               143-419
               

               Cow position:
               chr1:61350918-61351187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               30, 57
               

               Conread position:
               143-425
               

               Cow position:
               chr1:49131351-49131062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               33, 141
               

               Conread position:
               143-426
               

               Cow position:
               chr1:98562931-98563212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               35, 122
               

               Conread position:
               143-437
               

               Cow position:
               chr1:61724254-61723958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 67
               

               Conread position:
               143-450
               

               Cow position:
               chr1:53595096-53595393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               51, 34
               

               Conread position:
               143-451
               

               Cow position:
               chr1:102647498-102647198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 77
               

               Conread position:
               143-457
               

               Cow position:
               chr1:68951402-68951706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               33, 67
               

               Conread position:
               143-473
               

               Cow position:
               chr1:55146572-55146895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 110
               

               Conread position:
               143-476
               

               Cow position:
               chr1:20384850-20384523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               34, 80
               

               Conread position:
               143-490
               

               Cow position:
               chr1:95215415-95215075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 135
               

               Conread position:
               143-493
               

               Cow position:
               chr1:87888173-87888506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               35, 50
               

               Conread position:
               143-497
               

               Cow position:
               chr1:24597423-24597774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               31, 97
               

               Conread position:
               143-503
               

               Cow position:
               chr1:36874786-36875154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               274
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               35, 76
               

               Conread position:
               143-504
               

               Cow position:
               chr1:1165372-1165715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               264
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               28, 131
               

               Conread position:
               143-504
               

               Cow position:
               chr1:34300777-34300422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 57
               

               Conread position:
               143-504
               

               Cow position:
               chr1:61005795-61005434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               31, 201
               

               Conread position:
               143-510
               

               Cow position:
               chr1:33997141-33996789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               257
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               33, 98
               

               Conread position:
               143-510
               

               Cow position:
               chr1:55357515-55357159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               269
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               33, 77
               

               Conread position:
               143-510
               

               Cow position:
               chr1:83747710-83748076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               33, 134
               

               Conread position:
               143-510
               

               Cow position:
               chr1:84239336-84238986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 97
               

               Conread position:
               143-510
               

               Cow position:
               chr1:98551484-98551854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 43
               

               Conread position:
               143-512
               

               Cow position:
               chr1:41252632-41252273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 127
               

               Conread position:
               143-514
               

               Cow position:
               chr1:45007237-45007607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 74
               

               Conread position:
               143-516
               

               Cow position:
               chr1:52039408-52039777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 15
               

               Conread position:
               143-529
               

               Cow position:
               chr1:37707198-37706822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               33, 132
               

               Conread position:
               143-530
               

               Cow position:
               chr1:94226777-94226399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 65
               

               Conread position:
               143-541
               

               Cow position:
               chr1:22826940-22827323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               33, 77
               

               Conread position:
               143-541
               

               Cow position:
               chr1:81913381-81912988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 123
               

               Conread position:
               143-554
               

               Cow position:
               chr1:77720460-77720067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 15
               

               Conread position:
               143-558
               

               Cow position:
               chr1:73960472-73960883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 131
               

               Conread position:
               143-560
               

               Cow position:
               chr1:51394190-51394617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 44
               

               Conread position:
               143-560
               

               Cow position:
               chr1:101551229-101551647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               293
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               33, 14
               

               Conread position:
               143-561
               

               Cow position:
               chr1:71119282-71119721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 54
               

               Conread position:
               143-561
               

               Cow position:
               chr1:102266496-102266070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               143-562
               

               Cow position:
               chr1:3323629-3324075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 64
               

               Conread position:
               143-562
               

               Cow position:
               chr1:24542809-24542369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               304
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               32, 26
               

               Conread position:
               143-562
               

               Cow position:
               chr1:42887492-42887079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               292
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               33, 91
               

               Conread position:
               143-562
               

               Cow position:
               chr1:43505294-43505725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 67
               

               Conread position:
               143-562
               

               Cow position:
               chr1:59650037-59650452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               283
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               32, 43
               

               Conread position:
               143-562
               

               Cow position:
               chr1:75744631-75745061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               305
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               33, 80
               

               Conread position:
               143-562
               

               Cow position:
               chr1:81569264-81568828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               300
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               30, 130
               

               Conread position:
               143-562
               

               Cow position:
               chr1:84812166-84811740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               33, 126
               

               Conread position:
               143-563
               

               Cow position:
               chr1:34856858-34856422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 65
               

               Conread position:
               143-563
               

               Cow position:
               chr1:53369837-53370270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 143
               

               Conread position:
               143-563
               

               Cow position:
               chr1:68619165-68618738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 121
               

               Conread position:
               143-564
               

               Cow position:
               chr1:22728818-22729257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 126
               

               Conread position:
               143-564
               

               Cow position:
               chr1:29627144-29626708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 130
               

               Conread position:
               143-564
               

               Cow position:
               chr1:41735854-41735446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               292
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               33, 122
               

               Conread position:
               143-564
               

               Cow position:
               chr1:44506739-44507171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 34
               

               Conread position:
               143-564
               

               Cow position:
               chr1:64302463-64302047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 67
               

               Conread position:
               144-315
               

               Cow position:
               chr1:33716993-33717165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               144-324
               

               Cow position:
               chr1:19545328-19545153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               32, 80
               

               Conread position:
               144-326
               

               Cow position:
               chr1:44136690-44136518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               32, 94
               

               Conread position:
               144-329
               

               Cow position:
               chr1:89395364-89395552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               33, 56
               

               Conread position:
               144-338
               

               Cow position:
               chr1:32631238-32631425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               32, 71
               

               Conread position:
               144-364
               

               Cow position:
               chr1:30504242-30504457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               32, 97
               

               Conread position:
               144-372
               

               Cow position:
               chr1:81180208-81179983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               32, 127
               

               Conread position:
               144-373
               

               Cow position:
               chr1:78030711-78030474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               32, 77
               

               Conread position:
               144-390
               

               Cow position:
               chr1:84786542-84786780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               32, 122
               

               Conread position:
               144-392
               

               Cow position:
               chr1:99095135-99095381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               32, 53
               

               Conread position:
               144-392
               

               Cow position:
               chr1:99638008-99637762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               33, 94
               

               Conread position:
               144-398
               

               Cow position:
               chr1:666132-666391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-400
               

               Cow position:
               chr1:24655731-24655984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-400
               

               Cow position:
               chr1:56748361-56748625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               32, 128
               

               Conread position:
               144-403
               

               Cow position:
               chr1:11770522-11770265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               32, 78
               

               Conread position:
               144-407
               

               Cow position:
               chr1:82504738-82505007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 132
               

               Conread position:
               144-411
               

               Cow position:
               chr1:47008802-47009068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               29, 94
               

               Conread position:
               144-412
               

               Cow position:
               chr1:100512367-100512645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               32, 90
               

               Conread position:
               144-426
               

               Cow position:
               chr1:52329757-52329468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-429
               

               Cow position:
               chr1:45535473-45535760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               216
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               31, 125
               

               Conread position:
               144-437
               

               Cow position:
               chr1:26729499-26729779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               216
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-438
               

               Cow position:
               chr1:55260659-55260373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               32, 94
               

               Conread position:
               144-456
               

               Cow position:
               chr1:85774231-85774537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               211
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               32, 97
               

               Conread position:
               144-456
               

               Cow position:
               chr1:90864528-90864213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               144-457
               

               Cow position:
               chr1:79590872-79591179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               234
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               144-460
               

               Cow position:
               chr1:1185511-1185813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               227
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               32, 50
               

               Conread position:
               144-460
               

               Cow position:
               chr1:20002464-20002148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               30, 76
               

               Conread position:
               144-460
               

               Cow position:
               chr1:42968546-42968235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               144-460
               

               Cow position:
               chr1:52753394-52753076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-460
               

               Cow position:
               chr1:60707175-60707487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               33, 75
               

               Conread position:
               144-460
               

               Cow position:
               chr1:63596288-63595970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               31, 56
               

               Conread position:
               144-460
               

               Cow position:
               chr1:91817002-91816687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 126
               

               Conread position:
               144-460
               

               Cow position:
               chr1:92370589-92370285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               226
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               32, 121
               

               Conread position:
               144-462
               

               Cow position:
               chr1:57635238-57635549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               31, 76
               

               Conread position:
               144-462
               

               Cow position:
               chr1:96478467-96478786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               233
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               32, 51
               

               Conread position:
               144-473
               

               Cow position:
               chr1:57637144-57637454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               238
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               144-478
               

               Cow position:
               chr1:57305604-57305917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               32, 50
               

               Conread position:
               144-480
               

               Cow position:
               chr1:73584630-73584306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               144-481
               

               Cow position:
               chr1:61175955-61176283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               144-485
               

               Cow position:
               chr1:43358243-43357899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               32, 50
               

               Conread position:
               144-485
               

               Cow position:
               chr1:88652402-88652746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               33, 62
               

               Conread position:
               144-491
               

               Cow position:
               chr1:43822148-43822515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 263
               

               Conread position:
               144-491
               

               Cow position:
               chr1:72286278-72285952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 72
               

               Conread position:
               144-492
               

               Cow position:
               chr1:94212005-94212343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 45
               

               Conread position:
               144-496
               

               Cow position:
               chr1:84240671-84241001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 75
               

               Conread position:
               144-499
               

               Cow position:
               chr1:8349539-8349200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 76
               

               Conread position:
               144-501
               

               Cow position:
               chr1:79844240-79844591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               245
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               32, 90
               

               Conread position:
               144-502
               

               Cow position:
               chr1:52994795-52995153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 122
               

               Conread position:
               144-503
               

               Cow position:
               chr1:70297043-70297406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               32, 129
               

               Conread position:
               144-504
               

               Cow position:
               chr1:634963-635323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               250
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-504
               

               Cow position:
               chr1:874415-874783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 48
               

               Conread position:
               144-504
               

               Cow position:
               chr1:69264593-69264937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 66
               

               Conread position:
               144-504
               

               Cow position:
               chr1:89742240-89741866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 195
               

               Conread position:
               144-504
               

               Cow position:
               chr1:95499724-95499366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               32, 114
               

               Conread position:
               144-510
               

               Cow position:
               chr1:11226474-11226113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 129
               

               Conread position:
               144-510
               

               Cow position:
               chr1:53308621-53308259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-510
               

               Cow position:
               chr1:85162776-85162410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               253
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               32, 127
               

               Conread position:
               144-513
               

               Cow position:
               chr1:5135920-5135571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               32, 71
               

               Conread position:
               144-517
               

               Cow position:
               chr1:89342221-89341836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               269
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               32, 88
               

               Conread position:
               144-525
               

               Cow position:
               chr1:24729068-24728689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               269
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               32, 57
               

               Conread position:
               144-554
               

               Cow position:
               chr1:45020031-45019613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               299
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               144-555
               

               Cow position:
               chr1:100400430-100400010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-557
               

               Cow position:
               chr1:26896053-26895616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               300
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               30, 66
               

               Conread position:
               144-558
               

               Cow position:
               chr1:13614947-13614546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               294
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               31, 42
               

               Conread position:
               144-558
               

               Cow position:
               chr1:69695237-69694810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 222
               

               Conread position:
               144-560
               

               Cow position:
               chr1:56477366-56477784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 66
               

               Conread position:
               144-561
               

               Cow position:
               chr1:15547240-15547665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 79
               

               Conread position:
               144-561
               

               Cow position:
               chr1:42555041-42555443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 44
               

               Conread position:
               144-562
               

               Cow position:
               chr1:6760246-6759843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               294
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               32, 94
               

               Conread position:
               144-562
               

               Cow position:
               chr1:10942320-10941897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 79
               

               Conread position:
               144-562
               

               Cow position:
               chr1:10964066-10964489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 79
               

               Conread position:
               144-562
               

               Cow position:
               chr1:13413798-13414223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 111
               

               Conread position:
               144-562
               

               Cow position:
               chr1:24133284-24132862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 67
               

               Conread position:
               144-562
               

               Cow position:
               chr1:25383434-25383870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               314
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               144-562
               

               Cow position:
               chr1:29935610-29935190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               289
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               33, 127
               

               Conread position:
               144-562
               

               Cow position:
               chr1:33719885-33720305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 126
               

               Conread position:
               144-562
               

               Cow position:
               chr1:34159603-34160029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 90
               

               Conread position:
               144-562
               

               Cow position:
               chr1:51445651-51446083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-562
               

               Cow position:
               chr1:52435042-52435476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 61
               

               Conread position:
               144-562
               

               Cow position:
               chr1:56225247-56225667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               302
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-562
               

               Cow position:
               chr1:70380374-70379965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               284
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               32, 63
               

               Conread position:
               144-562
               

               Cow position:
               chr1:72012032-72011621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 64
               

               Conread position:
               144-562
               

               Cow position:
               chr1:77620322-77620750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               304
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               34, 53
               

               Conread position:
               144-562
               

               Cow position:
               chr1:85361627-85362038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               292
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               31, 56
               

               Conread position:
               144-562
               

               Cow position:
               chr1:96964092-96964520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-563
               

               Cow position:
               chr1:10778345-10778756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 62
               

               Conread position:
               144-563
               

               Cow position:
               chr1:53520678-53521107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 66
               

               Conread position:
               144-563
               

               Cow position:
               chr1:68827134-68826722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 79
               

               Conread position:
               144-563
               

               Cow position:
               chr1:71045526-71045937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 80
               

               Conread position:
               144-563
               

               Cow position:
               chr1:82338012-82337578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 129
               

               Conread position:
               144-563
               

               Cow position:
               chr1:99609137-99609569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 79
               

               Conread position:
               144-564
               

               Cow position:
               chr1:3924023-3923601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 47
               

               Conread position:
               144-564
               

               Cow position:
               chr1:21954446-21954025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               316
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               32, 66
               

               Conread position:
               144-564
               

               Cow position:
               chr1:22730533-22730936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 61
               

               Conread position:
               144-564
               

               Cow position:
               chr1:23969265-23968862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 80
               

               Conread position:
               144-564
               

               Cow position:
               chr1:39427210-39426814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               302
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               144-564
               

               Cow position:
               chr1:41056456-41056882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               303
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               34, 65
               

               Conread position:
               144-564
               

               Cow position:
               chr1:61392020-61391593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 42
               

               Conread position:
               144-564
               

               Cow position:
               chr1:78810807-78811241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               298
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               36, 128
               

               Conread position:
               145-391
               

               Cow position:
               chr1:67290637-67290879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               13, 94
               

               Conread position:
               145-392
               

               Cow position:
               chr1:68782877-68782618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               31, 12
               

               Conread position:
               145-556
               

               Cow position:
               chr1:88911118-88910729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               10, 76
               

               Conread position:
               145-559
               

               Cow position:
               chr1:97755293-97755699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               16, 76
               

               Conread position:
               145-561
               

               Cow position:
               chr1:8394-8818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 89
               

               Conread position:
               145-562
               

               Cow position:
               chr1:76096211-76096618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               10, 65
               

               Conread position:
               145-563
               

               Cow position:
               chr1:6305095-6304675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 13
               

               Conread position:
               145-564
               

               Cow position:
               chr1:31348139-31347730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               305
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               10, 67
               

               Conread position:
               145-564
               

               Cow position:
               chr1:82378566-82378975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               284
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               10, 79
               

               Conread position:
               146-388
               

               Cow position:
               chr1:44164852-44165100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               30, 92
               

               Conread position:
               146-472
               

               Cow position:
               chr1:63240718-63241069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               241
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               32, 55
               

               Conread position:
               146-490
               

               Cow position:
               chr1:37309737-37309404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 74
               

               Conread position:
               146-557
               

               Cow position:
               chr1:68845712-68845310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 77
               

               Conread position:
               146-563
               

               Cow position:
               chr1:95017742-95017358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               30, 79
               

               Conread position:
               147-266
               

               Cow position:
               chr1:88338470-88338593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               147-341
               

               Cow position:
               chr1:56711847-56711652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               29, 59
               

               Conread position:
               147-345
               

               Cow position:
               chr1:20287889-20288089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 119
               

               Conread position:
               147-367
               

               Cow position:
               chr1:91142382-91142163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               29, 121
               

               Conread position:
               147-386
               

               Cow position:
               chr1:56657813-56658045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               147-390
               

               Cow position:
               chr1:34000679-34000927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               11, 54
               

               Conread position:
               147-400
               

               Cow position:
               chr1:78783321-78783572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               31, 76
               

               Conread position:
               147-401
               

               Cow position:
               chr1:10116021-10115769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               29, 126
               

               Conread position:
               147-401
               

               Cow position:
               chr1:95050325-95050059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               29, 76
               

               Conread position:
               147-409
               

               Cow position:
               chr1:88970834-88971088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               30, 89
               

               Conread position:
               147-410
               

               Cow position:
               chr1:8532438-8532180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               177, 28
               

               Conread position:
               147-418
               

               Cow position:
               chr1:22448812-22448539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               211
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               26, 88
               

               Conread position:
               147-435
               

               Cow position:
               chr1:83082777-83083067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               31, 17
               

               Conread position:
               147-438
               

               Cow position:
               chr1:24235746-24235457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               207
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               29, 126
               

               Conread position:
               147-439
               

               Cow position:
               chr1:57639746-57639452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               224
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               29, 94
               

               Conread position:
               147-443
               

               Cow position:
               chr1:55135607-55135903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               14, 74
               

               Conread position:
               147-464
               

               Cow position:
               chr1:51628727-51628425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               29, 119
               

               Conread position:
               147-472
               

               Cow position:
               chr1:31765622-31765277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 258
               

               Conread position:
               147-472
               

               Cow position:
               chr1:68276181-68276507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               29, 53
               

               Conread position:
               147-473
               

               Cow position:
               chr1:90640799-90641125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 127
               

               Conread position:
               147-475
               

               Cow position:
               chr1:51981002-51981321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               29, 127
               

               Conread position:
               147-478
               

               Cow position:
               chr1:89084438-89084770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 124
               

               Conread position:
               147-483
               

               Cow position:
               chr1:81563508-81563852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               30, 126
               

               Conread position:
               147-486
               

               Cow position:
               chr1:82884614-82884284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               29, 13
               

               Conread position:
               147-488
               

               Cow position:
               chr1:99512478-99512153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               247
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               29, 46
               

               Conread position:
               147-489
               

               Cow position:
               chr1:63390999-63390653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 47
               

               Conread position:
               147-491
               

               Cow position:
               chr1:26200995-26201348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               29, 48
               

               Conread position:
               147-494
               

               Cow position:
               chr1:63435031-63434688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 21
               

               Conread position:
               147-494
               

               Cow position:
               chr1:101915941-101916285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               26, 127
               

               Conread position:
               147-497
               

               Cow position:
               chr1:89835008-89835373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               270
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               29, 51
               

               Conread position:
               147-503
               

               Cow position:
               chr1:52488186-52487853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               22, 29
               

               Conread position:
               147-503
               

               Cow position:
               chr1:95035581-95035225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               258
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               29, 53
               

               Conread position:
               147-504
               

               Cow position:
               chr1:80336472-80336119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 127
               

               Conread position:
               147-508
               

               Cow position:
               chr1:43872555-43872185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 11
               

               Conread position:
               147-510
               

               Cow position:
               chr1:90868661-90868312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 50
               

               Conread position:
               147-510
               

               Cow position:
               chr1:100770964-100770599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               29, 63
               

               Conread position:
               147-514
               

               Cow position:
               chr1:44769337-44768976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               266
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               29, 94
               

               Conread position:
               147-518
               

               Cow position:
               chr1:13637896-13637519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               258
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               24, 85
               

               Conread position:
               147-537
               

               Cow position:
               chr1:31414184-31413823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 73
               

               Conread position:
               147-543
               

               Cow position:
               chr1:66430072-66430453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 30
               

               Conread position:
               147-553
               

               Cow position:
               chr1:71079182-71078770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               295
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               30, 88
               

               Conread position:
               147-554
               

               Cow position:
               chr1:6941240-6941659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 87
               

               Conread position:
               147-554
               

               Cow position:
               chr1:6958653-6959072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 87
               

               Conread position:
               147-560
               

               Cow position:
               chr1:23041347-23041743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               277
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               30, 80
               

               Conread position:
               147-561
               

               Cow position:
               chr1:15333655-15334088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 28
               

               Conread position:
               147-561
               

               Cow position:
               chr1:68854949-68855366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               294
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               29, 63
               

               Conread position:
               147-561
               

               Cow position:
               chr1:82936807-82936405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               290
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               26, 73
               

               Conread position:
               147-562
               

               Cow position:
               chr1:41696829-41697255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 130
               

               Conread position:
               147-562
               

               Cow position:
               chr1:47658128-47658549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               306
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               29, 63
               

               Conread position:
               147-562
               

               Cow position:
               chr1:54199608-54199196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 18
               

               Conread position:
               147-562
               

               Cow position:
               chr1:57119568-57119165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               272
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               29, 117
               

               Conread position:
               147-562
               

               Cow position:
               chr1:69678551-69678122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               291
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               30, 127
               

               Conread position:
               147-562
               

               Cow position:
               chr1:70538378-70538807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 126
               

               Conread position:
               147-562
               

               Cow position:
               chr1:74084417-74083987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 52
               

               Conread position:
               147-562
               

               Cow position:
               chr1:87072479-87072895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 76
               

               Conread position:
               147-562
               

               Cow position:
               chr1:93499397-93499820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 126
               

               Conread position:
               147-562
               

               Cow position:
               chr1:102784735-102785147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               294
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               29, 118
               

               Conread position:
               147-563
               

               Cow position:
               chr1:57575993-57575562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               291
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               147-563
               

               Cow position:
               chr1:86113638-86113194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 50
               

               Conread position:
               147-564
               

               Cow position:
               chr1:54207045-54206616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               299
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               14, 62
               

               Conread position:
               147-564
               

               Cow position:
               chr1:91066374-91065954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 64
               

               Conread position:
               147-564
               

               Cow position:
               chr1:95176710-95177121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 125
               

               Conread position:
               148-410
               

               Cow position:
               chr1:1801915-1802174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 70
               

               Conread position:
               148-554
               

               Cow position:
               chr1:100741068-100741475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               21, 29
               

               Conread position:
               149-399
               

               Cow position:
               chr1:46885872-46886117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               149-429
               

               Cow position:
               chr1:98372407-98372685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               149-451
               

               Cow position:
               chr1:4401925-4402220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               24, 12
               

               Conread position:
               149-460
               

               Cow position:
               chr1:85867371-85867673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               27, 15
               

               Conread position:
               149-504
               

               Cow position:
               chr1:85593550-85593903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               25, 11
               

               Conread position:
               149-562
               

               Cow position:
               chr1:11853912-11853485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               306
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               25, 9
               

               Conread position:
               150-392
               

               Cow position:
               chr1:78154947-78154705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               23, 79
               

               Conread position:
               150-467
               

               Cow position:
               chr1:4374561-4374246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               240
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               27, 70
               

               Conread position:
               150-539
               

               Cow position:
               chr1:61735661-61735273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 50
               

               Conread position:
               150-555
               

               Cow position:
               chr1:97820463-97820878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               280
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               23, 124
               

               Conread position:
               150-562
               

               Cow position:
               chr1:36997970-36998383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 73
               

               Conread position:
               151-392
               

               Cow position:
               chr1:41954477-41954223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               13, 61
               

               Conread position:
               151-562
               

               Cow position:
               chr1:74947346-74946938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               284
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               88, 130
               

               Conread position:
               152-326
               

               Cow position:
               chr1:86484735-86484913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               24, 48
               

               Conread position:
               152-562
               

               Cow position:
               chr1:81228560-81228135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 70
               

               Conread position:
               152-564
               

               Cow position:
               chr1:71295536-71295101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               16, 134
               

               Conread position:
               153-355
               

               Cow position:
               chr1:14379749-14379555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               23, 34
               

               Conread position:
               153-391
               

               Cow position:
               chr1:98558003-98557767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               24, 120
               

               Conread position:
               153-392
               

               Cow position:
               chr1:21572824-21573071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               20, 122
               

               Conread position:
               153-455
               

               Cow position:
               chr1:98310841-98311151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 122
               

               Conread position:
               153-476
               

               Cow position:
               chr1:26943093-26943408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               23, 5
               

               Conread position:
               153-485
               

               Cow position:
               chr1:26702427-26702097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               23, 67
               

               Conread position:
               153-497
               

               Cow position:
               chr1:16962233-16961888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 122
               

               Conread position:
               153-554
               

               Cow position:
               chr1:11728958-11729365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 118
               

               Conread position:
               153-555
               

               Cow position:
               chr1:53622746-53623148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 5
               

               Conread position:
               153-561
               

               Cow position:
               chr1:92963180-92963573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 5
               

               Conread position:
               153-563
               

               Cow position:
               chr1:31348660-31348236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 41
               

               Conread position:
               154-388
               

               Cow position:
               chr1:45673493-45673730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               154-392
               

               Cow position:
               chr1:4589699-4589460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               19, 41
               

               Conread position:
               154-392
               

               Cow position:
               chr1:5409832-5409597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               19, 46
               

               Conread position:
               154-392
               

               Cow position:
               chr1:31341272-31341035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               19, 116
               

               Conread position:
               154-410
               

               Cow position:
               chr1:71952869-71953110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               22, 35
               

               Conread position:
               154-438
               

               Cow position:
               chr1:60907143-60907439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               21, 122
               

               Conread position:
               154-460
               

               Cow position:
               chr1:7186569-7186872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               224
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               21, 86
               

               Conread position:
               154-472
               

               Cow position:
               chr1:10655259-10655571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               235
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               22, 117
               

               Conread position:
               154-483
               

               Cow position:
               chr1:7350320-7350655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               23, 119
               

               Conread position:
               154-497
               

               Cow position:
               chr1:78809665-78809998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 66
               

               Conread position:
               154-499
               

               Cow position:
               chr1:98594352-98594689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 52
               

               Conread position:
               154-502
               

               Cow position:
               chr1:93043807-93044144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               24, 112
               

               Conread position:
               154-503
               

               Cow position:
               chr1:11914096-11913749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 46
               

               Conread position:
               154-510
               

               Cow position:
               chr1:52956041-52956384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               23, 61
               

               Conread position:
               154-510
               

               Cow position:
               chr1:84255536-84255902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 120
               

               Conread position:
               154-527
               

               Cow position:
               chr1:56229036-56229393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               20, 66
               

               Conread position:
               154-530
               

               Cow position:
               chr1:48105652-48105280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               267
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               21, 76
               

               Conread position:
               154-551
               

               Cow position:
               chr1:98030696-98031105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               285
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               22, 118
               

               Conread position:
               154-561
               

               Cow position:
               chr1:69539480-69539885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 63
               

               Conread position:
               154-562
               

               Cow position:
               chr1:35162185-35162606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 111
               

               Conread position:
               154-562
               

               Cow position:
               chr1:42256728-42256304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               299
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               19, 113
               

               Conread position:
               154-562
               

               Cow position:
               chr1:43352869-43352452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 18
               

               Conread position:
               154-562
               

               Cow position:
               chr1:48444401-48443990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 50
               

               Conread position:
               154-562
               

               Cow position:
               chr1:89510151-89509730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               289
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               21, 131
               

               Conread position:
               154-562
               

               Cow position:
               chr1:97611871-97611472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 81
               

               Conread position:
               154-563
               

               Cow position:
               chr1:14981337-14980936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               21, 43
               

               Conread position:
               154-563
               

               Cow position:
               chr1:39418337-39417929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 56
               

               Conread position:
               156-564
               

               Cow position:
               chr1:74956240-74955829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 64
               

               Conread position:
               157-325
               

               Cow position:
               chr1:20125396-20125560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               19, 43
               

               Conread position:
               157-495
               

               Cow position:
               chr1:100705917-100706246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 63
               

               Conread position:
               157-509
               

               Cow position:
               chr1:98461075-98461418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 103
               

               Conread position:
               157-510
               

               Cow position:
               chr1:34771719-34771368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 54
               

               Conread position:
               157-561
               

               Cow position:
               chr1:21577589-21578010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               289
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               19, 66
               

               Conread position:
               157-562
               

               Cow position:
               chr1:7442769-7443183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 20
               

               Conread position:
               157-562
               

               Cow position:
               chr1:38278261-38277825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 130
               

               Conread position:
               157-563
               

               Cow position:
               chr1:93528475-93528896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 117
               

               Conread position:
               157-564
               

               Cow position:
               chr1:8287829-8287427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 78
               

               Conread position:
               158-417
               

               Cow position:
               chr1:77502994-77502744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               16, 31
               

               Conread position:
               158-515
               

               Cow position:
               chr1:19885170-19885524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 118
               

               Conread position:
               159-483
               

               Cow position:
               chr1:40482625-40482306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               69, 201
               

               Conread position:
               160-385
               

               Cow position:
               chr1:5873184-5872956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               15, 74
               

               Conread position:
               160-469
               

               Cow position:
               chr1:6795147-6794833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               11, 129
               

               Conread position:
               160-493
               

               Cow position:
               chr1:94875891-94875557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               13, 81
               

               Conread position:
               160-494
               

               Cow position:
               chr1:81319077-81319406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               15, 116
               

               Conread position:
               160-515
               

               Cow position:
               chr1:27145866-27145515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               252
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               16, 41
               

               Conread position:
               160-543
               

               Cow position:
               chr1:99642582-99642190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 114
               

               Conread position:
               160-561
               

               Cow position:
               chr1:34685982-34686365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               299
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               16, 50
               

               Conread position:
               160-561
               

               Cow position:
               chr1:70422088-70422502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               297
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               13, 40
               

               Conread position:
               160-564
               

               Cow position:
               chr1:31871208-31871612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               17, 117
               

               Conread position:
               161-504
               

               Cow position:
               chr1:100800144-100800480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               15, 77
               

               Conread position:
               162-499
               

               Cow position:
               chr1:95056845-95057169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               14, 38
               

               Conread position:
               162-503
               

               Cow position:
               chr1:26179025-26178683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               9, 104
               

               Conread position:
               163-463
               

               Cow position:
               chr1:71257692-71257379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               10, 39
               

               Conread position:
               163-478
               

               Cow position:
               chr1:11659434-11659749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               10, 68
               

               Conread position:
               163-504
               

               Cow position:
               chr1:62291895-62291573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               12, 47
               

               Conread position:
               163-504
               

               Cow position:
               chr1:90976292-90975958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 53
               

               Conread position:
               163-510
               

               Cow position:
               chr1:71643873-71643523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 37
               

               Conread position:
               163-526
               

               Cow position:
               chr1:22836193-22836554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               10, 37
               

               Conread position:
               163-552
               

               Cow position:
               chr1:679821-679417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               268
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               10, 107
               

               Conread position:
               163-562
               

               Cow position:
               chr1:74929929-74929507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               292
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               10, 37
               

               Conread position:
               163-562
               

               Cow position:
               chr1:75382782-75383164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 117
               

               Conread position:
               164-460
               

               Cow position:
               chr1:86482695-86482988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               12, 18
               

               Conread position:
               164-478
               

               Cow position:
               chr1:40246886-40246575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               28, 116
               

               Conread position:
               164-562
               

               Cow position:
               chr1:197216-196805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               285
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               12, 36
               

               Conread position:
               164-562
               

               Cow position:
               chr1:21955582-21955171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               287
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               9, 36
               

               Conread position:
               165-563
               

               Cow position:
               chr1:43340827-43340431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 10
               

               Conread position:
               168-385
               

               Cow position:
               chr1:89438137-89437927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               71, 7
               

               Conread position:
               168-460
               

               Cow position:
               chr1:98619002-98619283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               9, 102
               

               Conread position:
               173-478
               

               Cow position:
               chr1:18196659-18196963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               64, 95
               

               Conread position:
               174-478
               

               Cow position:
               chr1:3381850-3381551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               62, 90
               

               Conread position:
               174-478
               

               Cow position:
               chr1:6200373-6200677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               63, 94
               

               Conread position:
               174-478
               

               Cow position:
               chr1:52354611-52354308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               63, 94
               

               Conread position:
               174-493
               

               Cow position:
               chr1:58825352-58825659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               173, 44
               

               Conread position:
               174-504
               

               Cow position:
               chr1:5858887-5858546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               229
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               18, 24
               

               Conread position:
               174-562
               

               Cow position:
               chr1:65025060-65025462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               13, 62
               

               Conread position:
               174-562
               

               Cow position:
               chr1:76037706-76037311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               19, 100
               

               Conread position:
               175-386
               

               Cow position:
               chr1:32013761-32013966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               152, 60
               

               Conread position:
               175-391
               

               Cow position:
               chr1:47884028-47883800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               175-412
               

               Cow position:
               chr1:81470933-81471169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               65, 95
               

               Conread position:
               175-442
               

               Cow position:
               chr1:95654911-95654647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               64, 89
               

               Conread position:
               175-448
               

               Cow position:
               chr1:51654215-51654496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               208
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               64, 43
               

               Conread position:
               175-462
               

               Cow position:
               chr1:6788485-6788197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 95
               

               Conread position:
               175-464
               

               Cow position:
               chr1:63138643-63138929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               213
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               67, 12
               

               Conread position:
               175-495
               

               Cow position:
               chr1:62732380-62732689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               119, 104
               

               Conread position:
               175-508
               

               Cow position:
               chr1:94261352-94261668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               175-509
               

               Cow position:
               chr1:62036605-62036937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               64, 83
               

               Conread position:
               175-560
               

               Cow position:
               chr1:4414403-4414030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               64, 33
               

               Conread position:
               175-562
               

               Cow position:
               chr1:60032794-60032413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               261
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               64, 43
               

               Conread position:
               176-431
               

               Cow position:
               chr1:82443651-82443400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               63, 42
               

               Conread position:
               176-496
               

               Cow position:
               chr1:32001515-32001200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               244
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               99, 32
               

               Conread position:
               176-510
               

               Cow position:
               chr1:28563763-28563433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 32
               

               Conread position:
               177-451
               

               Cow position:
               chr1:4338993-4339266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               61, 91
               

               Conread position:
               178-392
               

               Cow position:
               chr1:56674322-56674108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               63, 54
               

               Conread position:
               178-399
               

               Cow position:
               chr1:83594000-83593782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               61, 31
               

               Conread position:
               178-429
               

               Cow position:
               chr1:70028386-70028633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               61, 98
               

               Conread position:
               178-562
               

               Cow position:
               chr1:95100769-95101152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 58
               

               Conread position:
               179-561
               

               Cow position:
               chr1:724543-724939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               288
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               57, 74
               

               Conread position:
               179-561
               

               Cow position:
               chr1:33331280-33330902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               271
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               59, 88
               

               Conread position:
               179-562
               

               Cow position:
               chr1:25734662-25735069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 187
               

               Conread position:
               183-510
               

               Cow position:
               chr1:92369541-92369869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               236
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               53, 81
               

               Conread position:
               184-355
               

               Cow position:
               chr1:73536552-73536719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 14
               

               Conread position:
               184-482
               

               Cow position:
               chr1:91039363-91039068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               54, 80
               

               Conread position:
               184-504
               

               Cow position:
               chr1:97778808-97779120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               52, 76
               

               Conread position:
               184-561
               

               Cow position:
               chr1:71227890-71228295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               283
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               55, 216
               

               Conread position:
               184-562
               

               Cow position:
               chr1:12464850-12464464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               184-562
               

               Cow position:
               chr1:61742650-61742255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               45, 85
               

               Conread position:
               184-564
               

               Cow position:
               chr1:83072257-83072643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               264
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               55, 24
               

               Conread position:
               185-558
               

               Cow position:
               chr1:69004207-69004562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               50, 92
               

               Conread position:
               187-530
               

               Cow position:
               chr1:86578765-86579117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 35
               

               Conread position:
               188-562
               

               Cow position:
               chr1:100450369-100449991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               275
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               51, 5
               

               Conread position:
               190-562
               

               Cow position:
               chr1:541621-541976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               19, 47
               

               Conread position:
               190-564
               

               Cow position:
               chr1:20544111-20544470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               279
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               45, 76
               

               Conread position:
               192-504
               

               Cow position:
               chr1:57297300-57297620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               243
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               131, 26
               

               Conread position:
               193-486
               

               Cow position:
               chr1:21560853-21561123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               46, 78
               

               Conread position:
               193-502
               

               Cow position:
               chr1:77133576-77133879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               228
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               9, 48
               

               Conread position:
               195-562
               

               Cow position:
               chr1:86110912-86110544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               274
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               14, 79
               

               Conread position:
               197-425
               

               Cow position:
               chr1:80631525-80631748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               196, 75
               

               Conread position:
               197-437
               

               Cow position:
               chr1:24445802-24445567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               43, 14
               

               Conread position:
               197-472
               

               Cow position:
               chr1:73682410-73682146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               40, 72
               

               Conread position:
               197-475
               

               Cow position:
               chr1:95178777-95179053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               14, 40
               

               Conread position:
               197-477
               

               Cow position:
               chr1:69540125-69540383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               40, 14
               

               Conread position:
               197-488
               

               Cow position:
               chr1:101701820-101701534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               40, 21
               

               Conread position:
               197-494
               

               Cow position:
               chr1:31608072-31607770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               229
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               14, 39
               

               Conread position:
               197-504
               

               Cow position:
               chr1:91875084-91874788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               223
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               42, 32
               

               Conread position:
               197-515
               

               Cow position:
               chr1:9013351-9013674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               42, 209
               

               Conread position:
               197-535
               

               Cow position:
               chr1:75933099-75933416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               127, 26
               

               Conread position:
               197-562
               

               Cow position:
               chr1:54156914-54156533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 12
               

               Conread position:
               197-562
               

               Cow position:
               chr1:90621688-90621305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               274
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               42, 92
               

               Conread position:
               197-564
               

               Cow position:
               chr1:20667915-20667547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 21
               

               Conread position:
               198-465
               

               Cow position:
               chr1:57880965-57880697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               41, 71
               

               Conread position:
               198-480
               

               Cow position:
               chr1:11832940-11832675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               41, 73
               

               Conread position:
               198-498
               

               Cow position:
               chr1:24876093-24876385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               219
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               156, 34
               

               Conread position:
               198-510
               

               Cow position:
               chr1:85688013-85688312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               281, 28
               

               Conread position:
               198-539
               

               Cow position:
               chr1:102756598-102756260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               125, 38
               

               Conread position:
               198-561
               

               Cow position:
               chr1:33207047-33206674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 64
               

               Conread position:
               198-562
               

               Cow position:
               chr1:81290338-81290705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               259
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               41, 64
               

               Conread position:
               199-563
               

               Cow position:
               chr1:60281195-60281551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               40, 73
               

               Conread position:
               200-539
               

               Cow position:
               chr1:44075880-44075550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               300, 22
               

               Conread position:
               201-460
               

               Cow position:
               chr1:69127336-69127082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               123, 35
               

               Conread position:
               202-392
               

               Cow position:
               chr1:77440223-77440414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               37, 69
               

               Conread position:
               202-503
               

               Cow position:
               chr1:19568680-19568980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               35, 58
               

               Conread position:
               202-562
               

               Cow position:
               chr1:16061192-16060807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 51
               

               Conread position:
               202-562
               

               Cow position:
               chr1:55429128-55428752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 67
               

               Conread position:
               202-562
               

               Cow position:
               chr1:70343869-70344246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               37, 77
               

               Conread position:
               203-562
               

               Cow position:
               chr1:73546074-73545707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 57
               

               Conread position:
               204-460
               

               Cow position:
               chr1:65905178-65904914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               24, 66
               

               Conread position:
               204-502
               

               Cow position:
               chr1:67305411-67305115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               35, 67
               

               Conread position:
               206-478
               

               Cow position:
               chr1:43703240-43703511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 20
               

               Conread position:
               208-478
               

               Cow position:
               chr1:57524983-57524715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               34, 62
               

               Conread position:
               208-514
               

               Cow position:
               chr1:74927714-74928023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 64
               

               Conread position:
               208-553
               

               Cow position:
               chr1:87095397-87095019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 68
               

               Conread position:
               208-562
               

               Cow position:
               chr1:68862868-68863220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 63
               

               Conread position:
               208-563
               

               Cow position:
               chr1:95557870-95558241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 59
               

               Conread position:
               209-392
               

               Cow position:
               chr1:33811764-33811948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               30, 61
               

               Conread position:
               209-455
               

               Cow position:
               chr1:9470563-9470318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               30, 60
               

               Conread position:
               209-460
               

               Cow position:
               chr1:17633286-17633518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               30, 60
               

               Conread position:
               209-482
               

               Cow position:
               chr1:75141837-75142103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 62
               

               Conread position:
               209-483
               

               Cow position:
               chr1:83659438-83659171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 9
               

               Conread position:
               209-495
               

               Cow position:
               chr1:75347455-75347744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               30, 72
               

               Conread position:
               209-509
               

               Cow position:
               chr1:101268169-101267868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               230
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               118, 30
               

               Conread position:
               209-560
               

               Cow position:
               chr1:7739799-7740142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               144, 30
               

               Conread position:
               209-560
               

               Cow position:
               chr1:70828741-70829095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               209-561
               

               Cow position:
               chr1:63530410-63530759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 29
               

               Conread position:
               209-562
               

               Cow position:
               chr1:40599878-40600226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               31, 66
               

               Conread position:
               209-562
               

               Cow position:
               chr1:72068999-72068633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 16
               

               Conread position:
               209-562
               

               Cow position:
               chr1:76613296-76612931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               268
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               8, 14
               

               Conread position:
               209-563
               

               Cow position:
               chr1:40192848-40192501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               30, 61
               

               Conread position:
               209-564
               

               Cow position:
               chr1:7748052-7748419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 63
               

               Conread position:
               209-564
               

               Cow position:
               chr1:7752218-7752583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 63
               

               Conread position:
               210-385
               

               Cow position:
               chr1:32596289-32596468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               27, 62
               

               Conread position:
               210-391
               

               Cow position:
               chr1:81638238-81638422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               30, 62
               

               Conread position:
               210-406
               

               Cow position:
               chr1:91834063-91834255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               32, 27
               

               Conread position:
               210-417
               

               Cow position:
               chr1:3243774-3243979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               22, 56
               

               Conread position:
               210-444
               

               Cow position:
               chr1:92926560-92926795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               30, 138
               

               Conread position:
               210-451
               

               Cow position:
               chr1:42398361-42398116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               190
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               29, 59
               

               Conread position:
               210-504
               

               Cow position:
               chr1:101280880-101280609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               28, 61
               

               Conread position:
               210-509
               

               Cow position:
               chr1:3137763-3138047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               227
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               210-510
               

               Cow position:
               chr1:68763846-68763552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 64
               

               Conread position:
               210-510
               

               Cow position:
               chr1:77880895-77880598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 26
               

               Conread position:
               210-558
               

               Cow position:
               chr1:24188068-24188399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               25, 61
               

               Conread position:
               210-560
               

               Cow position:
               chr1:484630-484264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 26
               

               Conread position:
               210-560
               

               Cow position:
               chr1:49317661-49317302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 60
               

               Conread position:
               210-561
               

               Cow position:
               chr1:96472286-96472615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 25
               

               Conread position:
               210-562
               

               Cow position:
               chr1:38753753-38754118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               210-562
               

               Cow position:
               chr1:51417612-51417966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 29
               

               Conread position:
               210-562
               

               Cow position:
               chr1:59518756-59519112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               269
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               29, 60
               

               Conread position:
               210-563
               

               Cow position:
               chr1:101632503-101632150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 59
               

               Conread position:
               211-502
               

               Cow position:
               chr1:93554680-93554963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 59
               

               Conread position:
               211-504
               

               Cow position:
               chr1:97696577-97696873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 67
               

               Conread position:
               211-511
               

               Cow position:
               chr1:77683194-77683485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 60
               

               Conread position:
               211-563
               

               Cow position:
               chr1:27114504-27114839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               202, 24
               

               Conread position:
               212-483
               

               Cow position:
               chr1:86279252-86279521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               110, 27
               

               Conread position:
               212-504
               

               Cow position:
               chr1:85647944-85647653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               27, 59
               

               Conread position:
               213-391
               

               Cow position:
               chr1:60372425-60372248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               24, 59
               

               Conread position:
               213-460
               

               Cow position:
               chr1:46036121-46035867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               24, 65
               

               Conread position:
               213-467
               

               Cow position:
               chr1:70026505-70026254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               26, 64
               

               Conread position:
               214-407
               

               Cow position:
               chr1:51684643-51684838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               114, 22
               

               Conread position:
               214-498
               

               Cow position:
               chr1:14309198-14308909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               25, 55
               

               Conread position:
               214-502
               

               Cow position:
               chr1:97938809-97939084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 22
               

               Conread position:
               215-465
               

               Cow position:
               chr1:101946866-101946625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               113, 24
               

               Conread position:
               215-469
               

               Cow position:
               chr1:89485417-89485673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               85, 24
               

               Conread position:
               215-495
               

               Cow position:
               chr1:97231802-97232080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               211
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               116, 18
               

               Conread position:
               215-503
               

               Cow position:
               chr1:1499864-1499565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               23, 152
               

               Conread position:
               215-503
               

               Cow position:
               chr1:4032466-4032760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 63
               

               Conread position:
               215-504
               

               Cow position:
               chr1:3962851-3962557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               21, 59
               

               Conread position:
               215-510
               

               Cow position:
               chr1:76019850-76019563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 51
               

               Conread position:
               215-562
               

               Cow position:
               chr1:96305131-96304773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               104, 18
               

               Conread position:
               215-562
               

               Cow position:
               chr1:101866656-101866298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               258
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               23, 31
               

               Conread position:
               215-563
               

               Cow position:
               chr1:46030516-46030162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 61
               

               Conread position:
               217-503
               

               Cow position:
               chr1:76436336-76436608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               266, 51
               

               Conread position:
               217-510
               

               Cow position:
               chr1:33409785-33409489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               20, 52
               

               Conread position:
               217-562
               

               Cow position:
               chr1:42545941-42545599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 19
               

               Conread position:
               218-472
               

               Cow position:
               chr1:49077499-49077235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               21, 81
               

               Conread position:
               218-562
               

               Cow position:
               chr1:14206312-14205963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               21, 45
               

               Conread position:
               218-562
               

               Cow position:
               chr1:22192607-22192971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 51
               

               Conread position:
               218-562
               

               Cow position:
               chr1:64572357-64572715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 52
               

               Conread position:
               218-563
               

               Cow position:
               chr1:96081328-96081681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 59
               

               Conread position:
               219-391
               

               Cow position:
               chr1:86511975-86512148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               20, 52
               

               Conread position:
               219-392
               

               Cow position:
               chr1:64962824-64962649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               20, 55
               

               Conread position:
               219-392
               

               Cow position:
               chr1:85826191-85826365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               108, 20
               

               Conread position:
               219-435
               

               Cow position:
               chr1:15169489-15169276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               103, 10
               

               Conread position:
               219-485
               

               Cow position:
               chr1:98453430-98453701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               21, 52
               

               Conread position:
               219-495
               

               Cow position:
               chr1:91811631-91811898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               7, 51
               

               Conread position:
               219-500
               

               Cow position:
               chr1:98413611-98413897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               212
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               20, 53
               

               Conread position:
               219-562
               

               Cow position:
               chr1:88913162-88913521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               23, 54
               

               Conread position:
               222-458
               

               Cow position:
               chr1:10881220-10881000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               222-493
               

               Cow position:
               chr1:76470500-76470761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               214
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               17, 56
               

               Conread position:
               222-556
               

               Cow position:
               chr1:53369055-53369392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               106, 44
               

               Conread position:
               222-563
               

               Cow position:
               chr1:41115867-41115534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               253
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               17, 53
               

               Conread position:
               222-563
               

               Cow position:
               chr1:62519205-62519568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               13, 49
               

               Conread position:
               223-377
               

               Cow position:
               chr1:98397107-98396957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               101, 12
               

               Conread position:
               223-403
               

               Cow position:
               chr1:6961759-6961935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               101, 13
               

               Conread position:
               223-436
               

               Cow position:
               chr1:182658-182864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               122, 17
               

               Conread position:
               223-460
               

               Cow position:
               chr1:2737051-2737284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               96, 45
               

               Conread position:
               223-460
               

               Cow position:
               chr1:96038941-96038716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               64, 16
               

               Conread position:
               223-486
               

               Cow position:
               chr1:81868877-81868619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               16, 49
               

               Conread position:
               223-492
               

               Cow position:
               chr1:53425028-53425294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 10
               

               Conread position:
               223-504
               

               Cow position:
               chr1:57420879-57420607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               16, 53
               

               Conread position:
               223-510
               

               Cow position:
               chr1:65909375-65909645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 53
               

               Conread position:
               223-562
               

               Cow position:
               chr1:7971270-7971605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 48
               

               Conread position:
               223-562
               

               Cow position:
               chr1:18414602-18414288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               12, 18
               

               Conread position:
               223-562
               

               Cow position:
               chr1:23186946-23186601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 39
               

               Conread position:
               223-562
               

               Cow position:
               chr1:35554753-35555116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               223-562
               

               Cow position:
               chr1:42175573-42175929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               12, 48
               

               Conread position:
               223-562
               

               Cow position:
               chr1:76740833-76740471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               101, 47
               

               Conread position:
               223-562
               

               Cow position:
               chr1:96365518-96365850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 13
               

               Conread position:
               223-564
               

               Cow position:
               chr1:101834673-101835019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               262
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               13, 47
               

               Conread position:
               224-392
               

               Cow position:
               chr1:100812720-100812557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               15, 52
               

               Conread position:
               224-483
               

               Cow position:
               chr1:70312955-70312683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               15, 46
               

               Conread position:
               224-563
               

               Cow position:
               chr1:31272591-31272253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 46
               

               Conread position:
               224-563
               

               Cow position:
               chr1:89448750-89449100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               107, 12
               

               Conread position:
               225-510
               

               Cow position:
               chr1:24778134-24777858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               217
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               14, 33
               

               Conread position:
               225-532
               

               Cow position:
               chr1:24534402-24534093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               14, 7
               

               Conread position:
               225-555
               

               Cow position:
               chr1:23512804-23512482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 44
               

               Conread position:
               225-562
               

               Cow position:
               chr1:6166092-6166433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               255
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               14, 47
               

               Conread position:
               225-562
               

               Cow position:
               chr1:14759499-14759155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               247
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               225-562
               

               Cow position:
               chr1:65318426-65318778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 45
               

               Conread position:
               225-563
               

               Cow position:
               chr1:2075487-2075148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               270, 43
               

               Conread position:
               225-563
               

               Cow position:
               chr1:30047740-30047425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 11
               

               Conread position:
               225-564
               

               Cow position:
               chr1:50931125-50930777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 46
               

               Conread position:
               227-564
               

               Cow position:
               chr1:39225069-39224736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 9
               

               Conread position:
               229-403
               

               Cow position:
               chr1:49297214-49297393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               9, 117
               

               Conread position:
               229-434
               

               Cow position:
               chr1:93228383-93228583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               17, 7
               

               Conread position:
               229-509
               

               Cow position:
               chr1:20950579-20950848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               99, 7
               

               Conread position:
               229-558
               

               Cow position:
               chr1:26531722-26531404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               8, 18
               

               Conread position:
               229-561
               

               Cow position:
               chr1:95662451-95662786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               12, 43
               

               Conread position:
               231-460
               

               Cow position:
               chr1:95637688-95637916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               96, 36
               

               Conread position:
               231-496
               

               Cow position:
               chr1:2976138-2975873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               235-459
               

               Cow position:
               chr1:101983290-101983067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               86, 35
               

               Conread position:
               235-499
               

               Cow position:
               chr1:3352839-3352576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 157
               

               Conread position:
               236-453
               

               Cow position:
               chr1:87440332-87440544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               113, 33
               

               Conread position:
               236-460
               

               Cow position:
               chr1:29481763-29481547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               77, 31
               

               Conread position:
               236-465
               

               Cow position:
               chr1:29451782-29452010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               93, 31
               

               Conread position:
               236-494
               

               Cow position:
               chr1:6228721-6228466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               88, 33
               

               Conread position:
               236-501
               

               Cow position:
               chr1:20732567-20732831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               92, 66
               

               Conread position:
               236-505
               

               Cow position:
               chr1:92997035-92996761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               20, 35
               

               Conread position:
               236-561
               

               Cow position:
               chr1:4243479-4243130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               88, 38
               

               Conread position:
               238-478
               

               Cow position:
               chr1:39913143-39912899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               93, 32
               

               Conread position:
               238-562
               

               Cow position:
               chr1:100817423-100817742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               242
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               86, 7
               

               Conread position:
               238-564
               

               Cow position:
               chr1:78838664-78838990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               238
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               87, 32
               

               Conread position:
               239-468
               

               Cow position:
               chr1:5023889-5023670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               109, 29
               

               Conread position:
               239-485
               

               Cow position:
               chr1:89349829-89350075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               192
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               89, 30
               

               Conread position:
               239-504
               

               Cow position:
               chr1:85550211-85549950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 30
               

               Conread position:
               239-514
               

               Cow position:
               chr1:86073461-86073735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 30
               

               Conread position:
               239-542
               

               Cow position:
               chr1:50045666-50045960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               208
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               92, 31
               

               Conread position:
               239-555
               

               Cow position:
               chr1:47886622-47886286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 37
               

               Conread position:
               239-555
               

               Cow position:
               chr1:97090194-97090511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               104, 29
               

               Conread position:
               240-460
               

               Cow position:
               chr1:101715219-101714999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               81, 27
               

               Conread position:
               240-562
               

               Cow position:
               chr1:5010972-5010632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               241
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               107, 30
               

               Conread position:
               241-460
               

               Cow position:
               chr1:6294629-6294413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               90, 26
               

               Conread position:
               241-460
               

               Cow position:
               chr1:71399148-71399370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               87, 58
               

               Conread position:
               241-562
               

               Cow position:
               chr1:72105282-72105601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 12
               

               Conread position:
               244-482
               

               Cow position:
               chr1:26616199-26615968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               85, 25
               

               Conread position:
               244-485
               

               Cow position:
               chr1:4701801-4701564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               84, 25
               

               Conread position:
               244-504
               

               Cow position:
               chr1:100569023-100569285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               77, 23
               

               Conread position:
               244-560
               

               Cow position:
               chr1:42869064-42868751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               244
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               77, 26
               

               Conread position:
               245-460
               

               Cow position:
               chr1:5539404-5539192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               103, 22
               

               Conread position:
               246-392
               

               Cow position:
               chr1:10952358-10952208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               69, 30
               

               Conread position:
               247-473
               

               Cow position:
               chr1:7597118-7597350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               23, 39
               

               Conread position:
               247-510
               

               Cow position:
               chr1:43311908-43311636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               22, 151
               

               Conread position:
               247-562
               

               Cow position:
               chr1:11172249-11172569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               81, 22
               

               Conread position:
               248-562
               

               Cow position:
               chr1:71666066-71665733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               22, 40
               

               Conread position:
               248-563
               

               Cow position:
               chr1:72813488-72813820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 25
               

               Conread position:
               249-395
               

               Cow position:
               chr1:70043732-70043872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               250-510
               

               Cow position:
               chr1:80422154-80422407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 20
               

               Conread position:
               251-504
               

               Cow position:
               chr1:78697893-78697643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 19
               

               Conread position:
               252-557
               

               Cow position:
               chr1:37726542-37726218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               29, 57
               

               Conread position:
               253-563
               

               Cow position:
               chr1:67585426-67585753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               74, 17
               

               Conread position:
               255-434
               

               Cow position:
               chr1:36276375-36276551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               95, 20
               

               Conread position:
               255-460
               

               Cow position:
               chr1:648201-648409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               69, 106
               

               Conread position:
               256-495
               

               Cow position:
               chr1:87936778-87937015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               68, 18
               

               Conread position:
               256-504
               

               Cow position:
               chr1:7022998-7023250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               68, 132
               

               Conread position:
               256-563
               

               Cow position:
               chr1:67919025-67919330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 43
               

               Conread position:
               257-503
               

               Cow position:
               chr1:6972407-6972654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               16, 117
               

               Conread position:
               257-510
               

               Cow position:
               chr1:26895097-26894837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               68, 146
               

               Conread position:
               260-504
               

               Cow position:
               chr1:4180739-4180511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               65, 83
               

               Conread position:
               261-510
               

               Cow position:
               chr1:81580057-81580312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               16, 44
               

               Conread position:
               261-557
               

               Cow position:
               chr1:98467696-98467998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               89, 43
               

               Conread position:
               261-564
               

               Cow position:
               chr1:56618768-56618453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               60, 125
               

               Conread position:
               262-515
               

               Cow position:
               chr1:92989473-92989730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               191
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               66, 132
               

               Conread position:
               262-530
               

               Cow position:
               chr1:77232684-77232422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               207, 58
               

               Conread position:
               262-563
               

               Cow position:
               chr1:5637192-5636870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               241
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               64, 147
               

               Conread position:
               263-561
               

               Cow position:
               chr1:6394440-6394757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               34, 101
               

               Conread position:
               264-460
               

               Cow position:
               chr1:5776039-5776227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               88, 35
               

               Conread position:
               264-501
               

               Cow position:
               chr1:30418152-30417922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 89
               

               Conread position:
               264-552
               

               Cow position:
               chr1:79660516-79660210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               59, 129
               

               Conread position:
               264-563
               

               Cow position:
               chr1:26427976-26427679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               220
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               69, 42
               

               Conread position:
               265-392
               

               Cow position:
               chr1:80942434-80942566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               102
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               265-489
               

               Cow position:
               chr1:30189033-30189266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               63, 155
               

               Conread position:
               265-495
               

               Cow position:
               chr1:77424989-77425222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               68, 128
               

               Conread position:
               266-410
               

               Cow position:
               chr1:71716398-71716544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               61, 123
               

               Conread position:
               266-419
               

               Cow position:
               chr1:22394683-22394846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               266-489
               

               Cow position:
               chr1:61543030-61542805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               179
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               62, 137
               

               Conread position:
               266-494
               

               Cow position:
               chr1:95296722-95296488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               58, 77
               

               Conread position:
               266-504
               

               Cow position:
               chr1:66898609-66898368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               58, 75
               

               Conread position:
               266-510
               

               Cow position:
               chr1:89785800-89786046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               58, 8
               

               Conread position:
               266-544
               

               Cow position:
               chr1:86340583-86340298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               57, 25
               

               Conread position:
               266-558
               

               Cow position:
               chr1:81582010-81582292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               145, 62
               

               Conread position:
               266-562
               

               Cow position:
               chr1:77986534-77986215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               266-562
               

               Cow position:
               chr1:84104165-84103857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               41, 80
               

               Conread position:
               267-439
               

               Cow position:
               chr1:8984796-8984619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               59, 128
               

               Conread position:
               267-442
               

               Cow position:
               chr1:45285547-45285729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               61, 40
               

               Conread position:
               267-494
               

               Cow position:
               chr1:6826400-6826180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               83, 53
               

               Conread position:
               267-510
               

               Cow position:
               chr1:45553355-45553106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               54, 125
               

               Conread position:
               267-530
               

               Cow position:
               chr1:3790177-3789915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               57, 92
               

               Conread position:
               267-558
               

               Cow position:
               chr1:3607699-3607992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               220
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               61, 101
               

               Conread position:
               267-562
               

               Cow position:
               chr1:20104157-20104467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               59, 71
               

               Conread position:
               267-562
               

               Cow position:
               chr1:22944137-22943827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               57, 123
               

               Conread position:
               267-562
               

               Cow position:
               chr1:42482092-42482401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               61, 78
               

               Conread position:
               267-564
               

               Cow position:
               chr1:56225682-56225985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 53
               

               Conread position:
               267-564
               

               Cow position:
               chr1:78794336-78794033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 85
               

               Conread position:
               268-504
               

               Cow position:
               chr1:6752338-6752102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               82, 43
               

               Conread position:
               269-520
               

               Cow position:
               chr1:17196741-17196482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               15, 127
               

               Conread position:
               270-403
               

               Cow position:
               chr1:38544571-38544437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               58, 43
               

               Conread position:
               270-485
               

               Cow position:
               chr1:47288132-47288350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               54, 90
               

               Conread position:
               270-519
               

               Cow position:
               chr1:50964237-50963985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               54, 35
               

               Conread position:
               270-554
               

               Cow position:
               chr1:100324852-100324565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               213
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               58, 85
               

               Conread position:
               270-556
               

               Cow position:
               chr1:635793-635489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               58, 89
               

               Conread position:
               270-561
               

               Cow position:
               chr1:100421724-100422020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               226
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               54, 78
               

               Conread position:
               270-562
               

               Cow position:
               chr1:43855193-43855490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               225
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               55, 106
               

               Conread position:
               271-562
               

               Cow position:
               chr1:4391390-4391067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               227
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               50, 126
               

               Conread position:
               272-556
               

               Cow position:
               chr1:67114794-67115084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               163, 70
               

               Conread position:
               272-562
               

               Cow position:
               chr1:5579948-5580233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               55, 128
               

               Conread position:
               273-482
               

               Cow position:
               chr1:92433895-92434105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               51, 70
               

               Conread position:
               273-564
               

               Cow position:
               chr1:42541491-42541794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 75
               

               Conread position:
               275-529
               

               Cow position:
               chr1:86062089-86061837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               52, 75
               

               Conread position:
               275-562
               

               Cow position:
               chr1:71350826-71350523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               220
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               200, 92
               

               Conread position:
               277-510
               

               Cow position:
               chr1:82513457-82513221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               47, 109
               

               Conread position:
               277-551
               

               Cow position:
               chr1:55818960-55819224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               47, 79
               

               Conread position:
               278-482
               

               Cow position:
               chr1:19227155-19226950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               44, 79
               

               Conread position:
               278-543
               

               Cow position:
               chr1:65028429-65028700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               15, 120
               

               Conread position:
               278-556
               

               Cow position:
               chr1:24406994-24406719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               215
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               46, 72
               

               Conread position:
               278-562
               

               Cow position:
               chr1:3605978-3605688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               22, 62
               

               Conread position:
               278-562
               

               Cow position:
               chr1:22823805-22824110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               228
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               279-510
               

               Cow position:
               chr1:95153120-95153357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               49, 118
               

               Conread position:
               280-564
               

               Cow position:
               chr1:38418934-38419229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               197, 36
               

               Conread position:
               283-505
               

               Cow position:
               chr1:46783224-46783441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               78, 45
               

               Conread position:
               283-510
               

               Cow position:
               chr1:45670543-45670767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               42, 107
               

               Conread position:
               283-533
               

               Cow position:
               chr1:98511833-98512083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               43, 81
               

               Conread position:
               284-509
               

               Cow position:
               chr1:71796408-71796177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               41, 113
               

               Conread position:
               284-553
               

               Cow position:
               chr1:41047398-41047121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               42, 102
               

               Conread position:
               284-564
               

               Cow position:
               chr1:627867-628171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               44, 81
               

               Conread position:
               285-562
               

               Cow position:
               chr1:46030866-46031162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               214
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               43, 59
               

               Conread position:
               286-456
               

               Cow position:
               chr1:55089145-55088975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               41, 102
               

               Conread position:
               286-560
               

               Cow position:
               chr1:49825162-49824866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               286-563
               

               Cow position:
               chr1:82880552-82880833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 109
               

               Conread position:
               287-402
               

               Cow position:
               chr1:32788274-32788157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               37, 104
               

               Conread position:
               288-510
               

               Cow position:
               chr1:50991844-50992067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               43, 104
               

               Conread position:
               289-560
               

               Cow position:
               chr1:96558924-96558647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               82, 43
               

               Conread position:
               289-562
               

               Cow position:
               chr1:47790755-47790467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               39, 113
               

               Conread position:
               291-510
               

               Cow position:
               chr1:77892055-77892271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               67, 87
               

               Conread position:
               292-550
               

               Cow position:
               chr1:12725612-12725353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               32, 53
               

               Conread position:
               293-462
               

               Cow position:
               chr1:72684611-72684778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               35, 94
               

               Conread position:
               293-473
               

               Cow position:
               chr1:96583682-96583496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               293-486
               

               Cow position:
               chr1:101792200-101792010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               38, 57
               

               Conread position:
               293-504
               

               Cow position:
               chr1:100474146-100474363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               32, 103
               

               Conread position:
               293-508
               

               Cow position:
               chr1:65103534-65103747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               35, 102
               

               Conread position:
               293-521
               

               Cow position:
               chr1:56832859-56832634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               36, 99
               

               Conread position:
               293-561
               

               Cow position:
               chr1:29474431-29474152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               32, 52
               

               Conread position:
               293-564
               

               Cow position:
               chr1:78079635-78079926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               219
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               32, 54
               

               Conread position:
               294-494
               

               Cow position:
               chr1:33913736-33913947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               294-510
               

               Cow position:
               chr1:8347039-8347258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               34, 99
               

               Conread position:
               294-529
               

               Cow position:
               chr1:3815775-3815536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               57, 112
               

               Conread position:
               295-502
               

               Cow position:
               chr1:186356-186154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               51, 97
               

               Conread position:
               295-529
               

               Cow position:
               chr1:61846062-61846296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               33, 49
               

               Conread position:
               296-535
               

               Cow position:
               chr1:59147424-59147192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               55, 33
               

               Conread position:
               296-554
               

               Cow position:
               chr1:45223495-45223769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 101
               

               Conread position:
               296-562
               

               Cow position:
               chr1:75250029-75250313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               32, 99
               

               Conread position:
               298-458
               

               Cow position:
               chr1:61560807-61560641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               23, 99
               

               Conread position:
               298-510
               

               Cow position:
               chr1:52912978-52912763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               19, 48
               

               Conread position:
               299-503
               

               Cow position:
               chr1:68676282-68676490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               29, 94
               

               Conread position:
               299-562
               

               Cow position:
               chr1:43548137-43547868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               9, 211
               

               Conread position:
               300-494
               

               Cow position:
               chr1:27881534-27881726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               29, 60
               

               Conread position:
               300-562
               

               Cow position:
               chr1:52467223-52467486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               24, 95
               

               Conread position:
               300-562
               

               Cow position:
               chr1:98583679-98583949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               24, 55
               

               Conread position:
               302-510
               

               Cow position:
               chr1:6240355-6240148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               26, 59
               

               Conread position:
               302-510
               

               Cow position:
               chr1:68672676-68672467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               29, 94
               

               Conread position:
               304-460
               

               Cow position:
               chr1:6287079-6287232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               50, 16
               

               Conread position:
               308-504
               

               Cow position:
               chr1:58036948-58037147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               164
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               20, 86
               

               Conread position:
               310-562
               

               Cow position:
               chr1:46143531-46143266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               13, 85
               

               Conread position:
               310-562
               

               Cow position:
               chr1:52139701-52139427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               14, 71
               

               Conread position:
               311-504
               

               Cow position:
               chr1:78068132-78067941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               16, 43
               

               Conread position:
               311-530
               

               Cow position:
               chr1:74832359-74832573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               14, 42
               

               Conread position:
               311-562
               

               Cow position:
               chr1:101507296-101507551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               40, 9
               

               Conread position:
               311-563
               

               Cow position:
               chr1:30983552-30983290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               160, 9
               

               Conread position:
               312-510
               

               Cow position:
               chr1:92684754-92684559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               166, 39
               

               Conread position:
               312-562
               

               Cow position:
               chr1:102753790-102754051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               40, 255
               

               Conread position:
               313-503
               

               Cow position:
               chr1:95072264-95072460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               15, 79
               

               Conread position:
               313-504
               

               Cow position:
               chr1:43312094-43311902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               39, 88
               

               Conread position:
               313-510
               

               Cow position:
               chr1:98575980-98576182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               169
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               14, 58
               

               Conread position:
               315-511
               

               Cow position:
               chr1:8624513-8624314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               12, 79
               

               Conread position:
               316-522
               

               Cow position:
               chr1:21823310-21823508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               167, 24
               

               Conread position:
               316-560
               

               Cow position:
               chr1:102768124-102768374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               56, 37
               

               Conread position:
               319-562
               

               Cow position:
               chr1:71790203-71789947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               29, 9
               

               Conread position:
               320-499
               

               Cow position:
               chr1:6589986-6590157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               155, 23
               

               Conread position:
               320-562
               

               Cow position:
               chr1:19515669-19515416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               159, 21
               

               Conread position:
               322-499
               

               Cow position:
               chr1:84768932-84768755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               21, 68
               

               Conread position:
               322-504
               

               Cow position:
               chr1:95974342-95974528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               27, 73
               

               Conread position:
               322-560
               

               Cow position:
               chr1:500120-500375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               29, 95
               

               Conread position:
               323-443
               

               Cow position:
               chr1:99311481-99311361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               23, 62
               

               Conread position:
               323-491
               

               Cow position:
               chr1:30504450-30504617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               155, 61
               

               Conread position:
               323-504
               

               Cow position:
               chr1:73936203-73936015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               37, 73
               

               Conread position:
               323-504
               

               Cow position:
               chr1:76658131-76657938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               323-504
               

               Cow position:
               chr1:99221406-99221227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               27, 70
               

               Conread position:
               323-510
               

               Cow position:
               chr1:82942235-82942417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               156, 31
               

               Conread position:
               323-510
               

               Cow position:
               chr1:82944323-82944141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               156, 31
               

               Conread position:
               323-530
               

               Cow position:
               chr1:88359829-88360030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               155, 24
               

               Conread position:
               323-543
               

               Cow position:
               chr1:86688207-86687982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               162, 70
               

               Conread position:
               323-557
               

               Cow position:
               chr1:44946706-44946944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               323-562
               

               Cow position:
               chr1:22035557-22035809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               8, 48
               

               Conread position:
               323-562
               

               Cow position:
               chr1:37695961-37695702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               323-562
               

               Cow position:
               chr1:50432539-50432280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               323-562
               

               Cow position:
               chr1:57089735-57089478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               26, 71
               

               Conread position:
               323-563
               

               Cow position:
               chr1:2462329-2462573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               33, 6
               

               Conread position:
               323-563
               

               Cow position:
               chr1:33998705-33998951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               26, 85
               

               Conread position:
               323-564
               

               Cow position:
               chr1:77739664-77739927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               13, 73
               

               Conread position:
               324-503
               

               Cow position:
               chr1:30035162-30035349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               32, 132
               

               Conread position:
               324-562
               

               Cow position:
               chr1:99322620-99322369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               25, 73
               

               Conread position:
               325-501
               

               Cow position:
               chr1:46764824-46765002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               25, 67
               

               Conread position:
               326-560
               

               Cow position:
               chr1:15206917-15206683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               190, 13
               

               Conread position:
               327-510
               

               Cow position:
               chr1:84203465-84203646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               23, 64
               

               Conread position:
               327-561
               

               Cow position:
               chr1:83887-84111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               151, 31
               

               Conread position:
               327-564
               

               Cow position:
               chr1:48618287-48618044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               27, 13
               

               Conread position:
               328-504
               

               Cow position:
               chr1:31357558-31357382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               27, 79
               

               Conread position:
               328-561
               

               Cow position:
               chr1:60044939-60045187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               22, 64
               

               Conread position:
               329-562
               

               Cow position:
               chr1:7907990-7908226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               21, 66
               

               Conread position:
               330-494
               

               Cow position:
               chr1:54624883-54625050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               330-562
               

               Cow position:
               chr1:92590150-92590374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               23, 67
               

               Conread position:
               332-563
               

               Cow position:
               chr1:6854347-6854117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               20, 11
               

               Conread position:
               332-563
               

               Cow position:
               chr1:76735519-76735277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               145, 28
               

               Conread position:
               335-504
               

               Cow position:
               chr1:8670732-8670903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               18, 56
               

               Conread position:
               336-486
               

               Cow position:
               chr1:26159281-26159143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               142, 12
               

               Conread position:
               336-562
               

               Cow position:
               chr1:95835836-95835594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               141, 53
               

               Conread position:
               337-561
               

               Cow position:
               chr1:17055957-17056190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               162, 52
               

               Conread position:
               338-562
               

               Cow position:
               chr1:72422445-72422205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               14, 57
               

               Conread position:
               339-503
               

               Cow position:
               chr1:71916155-71915992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               12, 56
               

               Conread position:
               339-547
               

               Cow position:
               chr1:28470794-28471001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               122, 12
               

               Conread position:
               339-562
               

               Cow position:
               chr1:81858936-81858700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               83, 16
               

               Conread position:
               340-494
               

               Cow position:
               chr1:80757125-80756976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               139, 39
               

               Conread position:
               342-494
               

               Cow position:
               chr1:81809170-81809020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               136, 47
               

               Conread position:
               342-510
               

               Cow position:
               chr1:101177483-101177650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               96, 49
               

               Conread position:
               343-510
               

               Cow position:
               chr1:9143691-9143853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               139, 42
               

               Conread position:
               343-550
               

               Cow position:
               chr1:31256252-31256041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               135, 14
               

               Conread position:
               343-557
               

               Cow position:
               chr1:102468647-102468426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               134, 34
               

               Conread position:
               343-564
               

               Cow position:
               chr1:97144495-97144268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               182
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               90, 42
               

               Conread position:
               345-504
               

               Cow position:
               chr1:45478888-45478734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               139, 49
               

               Conread position:
               345-514
               

               Cow position:
               chr1:20864030-20864192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               132, 12
               

               Conread position:
               345-562
               

               Cow position:
               chr1:38205446-38205652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               133, 6
               

               Conread position:
               345-564
               

               Cow position:
               chr1:74082010-74081798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               15, 8
               

               Conread position:
               346-510
               

               Cow position:
               chr1:65881778-65881940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               11, 44
               

               Conread position:
               347-539
               

               Cow position:
               chr1:5006134-5006319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               13, 43
               

               Conread position:
               347-562
               

               Cow position:
               chr1:31819084-31819304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               162, 42
               

               Conread position:
               348-561
               

               Cow position:
               chr1:852143-852373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               7, 42
               

               Conread position:
               348-561
               

               Cow position:
               chr1:47402502-47402705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               46, 101
               

               Conread position:
               349-504
               

               Cow position:
               chr1:24791971-24791817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               128, 34
               

               Conread position:
               349-562
               

               Cow position:
               chr1:95618618-95618842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               177
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               131, 11
               

               Conread position:
               350-562
               

               Cow position:
               chr1:38706878-38706652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               127, 39
               

               Conread position:
               351-494
               

               Cow position:
               chr1:81629871-81629731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               351-510
               

               Cow position:
               chr1:2971893-2972052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               126, 58
               

               Conread position:
               351-561
               

               Cow position:
               chr1:67529032-67529256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               127, 38
               

               Conread position:
               351-562
               

               Cow position:
               chr1:6731158-6731380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               128, 26
               

               Conread position:
               351-562
               

               Cow position:
               chr1:72092646-72092422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               134, 43
               

               Conread position:
               351-563
               

               Cow position:
               chr1:73721337-73721566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               119, 38
               

               Conread position:
               352-560
               

               Cow position:
               chr1:98636683-98636872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               352-561
               

               Cow position:
               chr1:42152507-42152289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               43, 122
               

               Conread position:
               352-561
               

               Cow position:
               chr1:49334414-49334192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               127, 37
               

               Conread position:
               352-563
               

               Cow position:
               chr1:49980688-49980910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               126, 37
               

               Conread position:
               352-563
               

               Cow position:
               chr1:63078988-63079203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               126, 31
               

               Conread position:
               353-504
               

               Cow position:
               chr1:43148569-43148416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               353-562
               

               Cow position:
               chr1:20871580-20871355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               124, 38
               

               Conread position:
               354-482
               

               Cow position:
               chr1:102346056-102345929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               104, 40
               

               Conread position:
               354-504
               

               Cow position:
               chr1:68127210-68127060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               124, 31
               

               Conread position:
               354-510
               

               Cow position:
               chr1:3914938-3914784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               122, 40
               

               Conread position:
               354-554
               

               Cow position:
               chr1:99071110-99071305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               40, 45
               

               Conread position:
               354-562
               

               Cow position:
               chr1:67654340-67654124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               124, 37
               

               Conread position:
               354-562
               

               Cow position:
               chr1:90267702-90267925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               123, 6
               

               Conread position:
               354-562
               

               Cow position:
               chr1:98897714-98897489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               124, 29
               

               Conread position:
               355-510
               

               Cow position:
               chr1:19304552-19304705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               9, 35
               

               Conread position:
               356-490
               

               Cow position:
               chr1:24561527-24561394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               120, 33
               

               Conread position:
               356-490
               

               Cow position:
               chr1:24570965-24570832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               120, 33
               

               Conread position:
               356-542
               

               Cow position:
               chr1:69940841-69940646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               120, 33
               

               Conread position:
               356-564
               

               Cow position:
               chr1:102648260-102648483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               122, 33
               

               Conread position:
               357-562
               

               Cow position:
               chr1:62142501-62142306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               120, 31
               

               Conread position:
               357-563
               

               Cow position:
               chr1:83606475-83606254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               358-524
               

               Cow position:
               chr1:98683858-98684021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               120, 31
               

               Conread position:
               358-539
               

               Cow position:
               chr1:95516023-95516197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               120, 31
               

               Conread position:
               358-557
               

               Cow position:
               chr1:96184005-96183792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               36, 194
               

               Conread position:
               358-562
               

               Cow position:
               chr1:92075473-92075681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               117, 31
               

               Conread position:
               359-504
               

               Cow position:
               chr1:45874093-45873941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               56, 30
               

               Conread position:
               359-504
               

               Cow position:
               chr1:65638900-65639039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               359-504
               

               Cow position:
               chr1:67918742-67918886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               118, 30
               

               Conread position:
               359-510
               

               Cow position:
               chr1:56711614-56711466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               119, 30
               

               Conread position:
               359-556
               

               Cow position:
               chr1:61011166-61011370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               119, 29
               

               Conread position:
               359-560
               

               Cow position:
               chr1:17742710-17742925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               359-562
               

               Cow position:
               chr1:242542-242753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               119, 30
               

               Conread position:
               359-562
               

               Cow position:
               chr1:33846584-33846369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               359-562
               

               Cow position:
               chr1:46245764-46245535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               28, 103
               

               Conread position:
               359-564
               

               Cow position:
               chr1:88111860-88112049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               360-494
               

               Cow position:
               chr1:85712426-85712558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               360-504
               

               Cow position:
               chr1:54157280-54157425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               360-546
               

               Cow position:
               chr1:6031610-6031810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               110, 29
               

               Conread position:
               360-562
               

               Cow position:
               chr1:3818389-3818602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               34, 17
               

               Conread position:
               360-562
               

               Cow position:
               chr1:51860575-51860363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               119, 23
               

               Conread position:
               361-562
               

               Cow position:
               chr1:6381759-6381977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               117, 26
               

               Conread position:
               363-510
               

               Cow position:
               chr1:759429-759283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               115, 20
               

               Conread position:
               363-510
               

               Cow position:
               chr1:64019532-64019384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               111, 31
               

               Conread position:
               363-562
               

               Cow position:
               chr1:51968525-51968728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               115, 55
               

               Conread position:
               364-494
               

               Cow position:
               chr1:83301962-83301831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               63, 25
               

               Conread position:
               364-504
               

               Cow position:
               chr1:22461248-22461109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               110, 25
               

               Conread position:
               364-562
               

               Cow position:
               chr1:9637018-9637231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               11, 26
               

               Conread position:
               366-503
               

               Cow position:
               chr1:42178737-42178873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               113, 23
               

               Conread position:
               366-562
               

               Cow position:
               chr1:1496540-1496326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               111, 23
               

               Conread position:
               366-562
               

               Cow position:
               chr1:76739917-76739713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               108, 11
               

               Conread position:
               368-521
               

               Cow position:
               chr1:69445323-69445477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               76, 26
               

               Conread position:
               369-508
               

               Cow position:
               chr1:82877181-82877317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               110
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               108, 8
               

               Conread position:
               369-562
               

               Cow position:
               chr1:54569692-54569902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               108, 15
               

               Conread position:
               371-562
               

               Cow position:
               chr1:100852706-100852903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               107, 18
               

               Conread position:
               371-564
               

               Cow position:
               chr1:99605189-99604989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               107, 7
               

               Conread position:
               372-564
               

               Cow position:
               chr1:56913531-56913329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               125, 22
               

               Conread position:
               373-510
               

               Cow position:
               chr1:42404133-42404270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               106, 36
               

               Conread position:
               374-504
               

               Cow position:
               chr1:73551510-73551378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               110
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               77, 9
               

               Conread position:
               374-504
               

               Cow position:
               chr1:95152871-95153000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               103, 15
               

               Conread position:
               374-554
               

               Cow position:
               chr1:61134404-61134608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               374-555
               

               Cow position:
               chr1:23633932-23633733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               20, 25
               

               Conread position:
               374-561
               

               Cow position:
               chr1:43499296-43499110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               164, 15
               

               Conread position:
               375-499
               

               Cow position:
               chr1:92603020-92603143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               102, 14
               

               Conread position:
               375-504
               

               Cow position:
               chr1:9679167-9679294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               103
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               81, 19
               

               Conread position:
               375-507
               

               Cow position:
               chr1:4524155-4524286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               99, 14
               

               Conread position:
               375-532
               

               Cow position:
               chr1:19997971-19997819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               102, 14
               

               Conread position:
               375-561
               

               Cow position:
               chr1:7793520-7793334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               102, 14
               

               Conread position:
               375-561
               

               Cow position:
               chr1:32014199-32014391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               161
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               103, 14
               

               Conread position:
               376-562
               

               Cow position:
               chr1:40077794-40077991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               30, 19
               

               Conread position:
               377-560
               

               Cow position:
               chr1:89437711-89437529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               103, 12
               

               Conread position:
               378-562
               

               Cow position:
               chr1:52450773-52450963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               99, 174
               

               Conread position:
               380-539
               

               Cow position:
               chr1:46100836-46100678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               97, 133
               

               Conread position:
               380-556
               

               Cow position:
               chr1:731970-731775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               381-504
               

               Cow position:
               chr1:8353384-8353508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               381-504
               

               Cow position:
               chr1:57359469-57359591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               98, 27
               

               Conread position:
               381-530
               

               Cow position:
               chr1:9437282-9437134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               131, 15
               

               Conread position:
               381-562
               

               Cow position:
               chr1:20537210-20537403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               381-562
               

               Cow position:
               chr1:40303556-40303749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               381-562
               

               Cow position:
               chr1:77689879-77689705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               97, 13
               

               Conread position:
               382-503
               

               Cow position:
               chr1:19855163-19855280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               96, 30
               

               Conread position:
               382-510
               

               Cow position:
               chr1:6894490-6894362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               101, 108
               

               Conread position:
               382-562
               

               Cow position:
               chr1:97536294-97536479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               15, 100
               

               Conread position:
               382-562
               

               Cow position:
               chr1:98557113-98556917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               382-564
               

               Cow position:
               chr1:39684139-39683939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               8, 78
               

               Conread position:
               383-500
               

               Cow position:
               chr1:28985565-28985441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               383-502
               

               Cow position:
               chr1:76080812-76080932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               18, 63
               

               Conread position:
               383-558
               

               Cow position:
               chr1:38055493-38055308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               96, 7
               

               Conread position:
               383-561
               

               Cow position:
               chr1:11770227-11770042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               95, 12
               

               Conread position:
               383-563
               

               Cow position:
               chr1:19031294-19031120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               157, 13
               

               Conread position:
               384-554
               

               Cow position:
               chr1:81179340-81179161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               65, 158
               

               Conread position:
               384-563
               

               Cow position:
               chr1:89298102-89297905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               95, 70
               

               Conread position:
               384-563
               

               Cow position:
               chr1:89301711-89301514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               95, 70
               

               Conread position:
               385-497
               

               Cow position:
               chr1:52679595-52679704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               96
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               96, 27
               

               Conread position:
               385-499
               

               Cow position:
               chr1:31630278-31630163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               94
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               385-504
               

               Cow position:
               chr1:67539567-67539688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               14, 38
               

               Conread position:
               385-510
               

               Cow position:
               chr1:24656254-24656378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               98
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               385-510
               

               Cow position:
               chr1:79409460-79409587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               385-510
               

               Cow position:
               chr1:81364269-81364397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               385-510
               

               Cow position:
               chr1:90817000-90817125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               92, 115
               

               Conread position:
               385-545
               

               Cow position:
               chr1:3776326-3776168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               93, 107
               

               Conread position:
               385-555
               

               Cow position:
               chr1:76518431-76518619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               385-562
               

               Cow position:
               chr1:13685091-13684905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               385-562
               

               Cow position:
               chr1:15628291-15628480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               385-562
               

               Cow position:
               chr1:31340762-31340566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               385-562
               

               Cow position:
               chr1:34001056-34001244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               385-562
               

               Cow position:
               chr1:58420212-58420399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               92, 46
               

               Conread position:
               385-562
               

               Cow position:
               chr1:61373732-61373912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               116, 24
               

               Conread position:
               385-562
               

               Cow position:
               chr1:69411689-69411494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               12, 157
               

               Conread position:
               385-562
               

               Cow position:
               chr1:82336687-82336872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               385-564
               

               Cow position:
               chr1:87149806-87149613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               386-554
               

               Cow position:
               chr1:78793993-78793810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               386-555
               

               Cow position:
               chr1:81638558-81638733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               145
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               386-562
               

               Cow position:
               chr1:25022065-25021877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               386-562
               

               Cow position:
               chr1:63460888-63461079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               387-488
               

               Cow position:
               chr1:6989161-6989263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               85
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               387-491
               

               Cow position:
               chr1:22153705-22153809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               87
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               91, 31
               

               Conread position:
               387-494
               

               Cow position:
               chr1:33812227-33812334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               92
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               387-496
               

               Cow position:
               chr1:81668806-81668696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               90
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               387-498
               

               Cow position:
               chr1:64706504-64706615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               91, 60
               

               Conread position:
               387-504
               

               Cow position:
               chr1:84288414-84288531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               91, 114
               

               Conread position:
               387-507
               

               Cow position:
               chr1:55194235-55194115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               98
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               91, 102
               

               Conread position:
               387-509
               

               Cow position:
               chr1:45673765-45673890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               387-552
               

               Cow position:
               chr1:52370160-52369990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               91, 30
               

               Conread position:
               387-552
               

               Cow position:
               chr1:100812280-100812109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               89, 30
               

               Conread position:
               387-562
               

               Cow position:
               chr1:1242166-1241996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               129, 25
               

               Conread position:
               387-563
               

               Cow position:
               chr1:64960420-64960244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               89, 30
               

               Conread position:
               387-564
               

               Cow position:
               chr1:30949003-30949185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               91, 60
               

               Conread position:
               388-503
               

               Cow position:
               chr1:42822283-42822399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               93
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               388-539
               

               Cow position:
               chr1:69532511-69532351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               389-498
               

               Cow position:
               chr1:94823379-94823269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               389-510
               

               Cow position:
               chr1:77685968-77685846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               389-512
               

               Cow position:
               chr1:81452367-81452490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               87, 28
               

               Conread position:
               389-557
               

               Cow position:
               chr1:70416747-70416564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               389-562
               

               Cow position:
               chr1:87220473-87220643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               87, 39
               

               Conread position:
               390-561
               

               Cow position:
               chr1:85339401-85339577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               88, 27
               

               Conread position:
               390-563
               

               Cow position:
               chr1:79663423-79663251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               88, 6
               

               Conread position:
               390-564
               

               Cow position:
               chr1:6836845-6836665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               82, 153
               

               Conread position:
               391-554
               

               Cow position:
               chr1:63905244-63905071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               392-504
               

               Cow position:
               chr1:1875404-1875516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               95
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               86, 17
               

               Conread position:
               392-562
               

               Cow position:
               chr1:41022439-41022617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               85, 20
               

               Conread position:
               392-562
               

               Cow position:
               chr1:46004297-46004475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               85, 151
               

               Conread position:
               393-510
               

               Cow position:
               chr1:99024214-99024096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               393-533
               

               Cow position:
               chr1:31627869-31628007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               85, 22
               

               Conread position:
               394-560
               

               Cow position:
               chr1:32035692-32035515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               395-564
               

               Cow position:
               chr1:62469080-62469261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               82, 28
               

               Conread position:
               397-560
               

               Cow position:
               chr1:48301430-48301252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               397-561
               

               Cow position:
               chr1:91796206-91796042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               142, 12
               

               Conread position:
               398-560
               

               Cow position:
               chr1:96362403-96362239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               81, 15
               

               Conread position:
               398-561
               

               Cow position:
               chr1:71636301-71636128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               80, 75
               

               Conread position:
               399-502
               

               Cow position:
               chr1:52506149-52506045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               105
               

               Alignm identity:
               87
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               399-561
               

               Cow position:
               chr1:100800746-100800569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               400-562
               

               Cow position:
               chr1:70044379-70044545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               11, 19
               

               Conread position:
               401-563
               

               Cow position:
               chr1:40284613-40284447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               74, 17
               

               Conread position:
               402-564
               

               Cow position:
               chr1:75227293-75227122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               76, 16
               

               Conread position:
               403-560
               

               Cow position:
               chr1:87934244-87934081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               405-562
               

               Cow position:
               chr1:22828541-22828372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               407-561
               

               Cow position:
               chr1:64421572-64421736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               408-510
               

               Cow position:
               chr1:49358080-49358183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               89
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               413-554
               

               Cow position:
               chr1:50843815-50843664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               413-563
               

               Cow position:
               chr1:84787307-84787462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               65, 118
               

               Conread position:
               413-564
               

               Cow position:
               chr1:69250471-69250635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               414-562
               

               Cow position:
               chr1:45449340-45449488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               64, 141
               

               Conread position:
               418-563
               

               Cow position:
               chr1:74010954-74011091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               58, 89
               

               Conread position:
               421-539
               

               Cow position:
               chr1:45505882-45505759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               428-562
               

               Cow position:
               chr1:3034147-3034007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               429-562
               

               Cow position:
               chr1:57638913-57638781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               48, 77
               

               Conread position:
               431-554
               

               Cow position:
               chr1:39703019-39703145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               47, 61
               

               Conread position:
               433-562
               

               Cow position:
               chr1:5849315-5849446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               45, 67
               

               Conread position:
               433-562
               

               Cow position:
               chr1:37470557-37470692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               438-564
               

               Cow position:
               chr1:54294453-54294318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               40, 0
               
Show alignments to all cow chromosomes.
Conread position:	122-563
Cow position:	chr1:52052951-52052531 (view UCSC Genome Browser custom track)
Alignm length:	457
Alignm identity:	328
Alignm E-value:	0
Alignm gaps (pig, cow):	53, 35
Conread position:	125-563
Cow position:	chr1:69415965-69415527 (view UCSC Genome Browser custom track)
Alignm length:	454
Alignm identity:	310
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	51, 149
Conread position:	126-380
Cow position:	chr1:41004612-41004354 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	187
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	51, 31
Conread position:	126-476
Cow position:	chr1:51531528-51531851 (view UCSC Genome Browser custom track)
Alignm length:	353
Alignm identity:	259
Alignm E-value:	0
Alignm gaps (pig, cow):	50, 31
Conread position:	126-497
Cow position:	chr1:89076882-89076511 (view UCSC Genome Browser custom track)
Alignm length:	382
Alignm identity:	284
Alignm E-value:	0
Alignm gaps (pig, cow):	51, 60
Conread position:	128-504
Cow position:	chr1:43389291-43388923 (view UCSC Genome Browser custom track)
Alignm length:	388
Alignm identity:	266
Alignm E-value:	9e-37
Alignm gaps (pig, cow):	48, 29
Conread position:	128-562
Cow position:	chr1:70227948-70227490 (view UCSC Genome Browser custom track)
Alignm length:	466
Alignm identity:	310
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	12, 63
Conread position:	129-445
Cow position:	chr1:79278684-79278377 (view UCSC Genome Browser custom track)
Alignm length:	323
Alignm identity:	235
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	195, 28
Conread position:	129-541
Cow position:	chr1:49433507-49433084 (view UCSC Genome Browser custom track)
Alignm length:	435
Alignm identity:	310
Alignm E-value:	0
Alignm gaps (pig, cow):	47, 28
Conread position:	131-563
Cow position:	chr1:45555127-45555567 (view UCSC Genome Browser custom track)
Alignm length:	454
Alignm identity:	331
Alignm E-value:	0
Alignm gaps (pig, cow):	197, 9
Conread position:	133-441
Cow position:	chr1:1916472-1916162 (view UCSC Genome Browser custom track)
Alignm length:	322
Alignm identity:	229
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	40, 14
Conread position:	133-456
Cow position:	chr1:91800844-91800520 (view UCSC Genome Browser custom track)
Alignm length:	335
Alignm identity:	233
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	43, 24
Conread position:	133-458
Cow position:	chr1:3429747-3429427 (view UCSC Genome Browser custom track)
Alignm length:	336
Alignm identity:	230
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	36, 24
Conread position:	133-562
Cow position:	chr1:84282825-84283272 (view UCSC Genome Browser custom track)
Alignm length:	455
Alignm identity:	300
Alignm E-value:	9e-37
Alignm gaps (pig, cow):	43, 107
Conread position:	134-421
Cow position:	chr1:68995932-68996227 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	217
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	12, 216
Conread position:	135-460
Cow position:	chr1:72103611-72103934 (view UCSC Genome Browser custom track)
Alignm length:	336
Alignm identity:	236
Alignm E-value:	1e-38
Alignm gaps (pig, cow):	41, 28
Conread position:	136-410
Cow position:	chr1:4573285-4573554 (view UCSC Genome Browser custom track)
Alignm length:	280
Alignm identity:	199
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	40, 21
Conread position:	136-432
Cow position:	chr1:43448061-43447771 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	220
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	8, 85
Conread position:	136-460
Cow position:	chr1:11772316-11772002 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	237
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	40, 21
Conread position:	136-476
Cow position:	chr1:30413350-30413689 (view UCSC Genome Browser custom track)
Alignm length:	355
Alignm identity:	238
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	27, 102