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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8055B16.3
        

               
Conread position:
               
123-409
               

               
Cow position:
               
chr5:35235939-35235656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
123-562
               

               
Cow position:
               
chr5:18898756-18899178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
124-495
               

               
Cow position:
               
chr5:52831214-52831607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
125-500
               

               
Cow position:
               
chr5:57736886-57737244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
52, 85
               

               
Conread position:
               
126-498
               

               
Cow position:
               
chr5:34528335-34528689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
127-325
               

               
Cow position:
               
chr5:24616347-24616149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
127-425
               

               
Cow position:
               
chr5:54154602-54154322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
109, 13
               

               
Conread position:
               
128-460
               

               
Cow position:
               
chr5:48154700-48154361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
130-562
               

               
Cow position:
               
chr5:39442070-39442499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
46, 129
               

               
Conread position:
               
131-347
               

               
Cow position:
               
chr5:57271485-57271273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
131-453
               

               
Cow position:
               
chr5:40039992-40039669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
131-502
               

               
Cow position:
               
chr5:64524096-64523715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 35
               

               
Conread position:
               
131-543
               

               
Cow position:
               
chr5:458256-458674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
134-392
               

               
Cow position:
               
chr5:43395357-43395111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
136-391
               

               
Cow position:
               
chr5:49820925-49821177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
136-476
               

               
Cow position:
               
chr5:56518426-56518102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
136-504
               

               
Cow position:
               
chr5:3204619-3204975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
136-525
               

               
Cow position:
               
chr5:54311117-54311507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
137-304
               

               
Cow position:
               
chr5:32087937-32087769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 129
               

               
Conread position:
               
137-344
               

               
Cow position:
               
chr5:60519950-60520151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
137-386
               

               
Cow position:
               
chr5:34915926-34916163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
137-449
               

               
Cow position:
               
chr5:34709576-34709889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
137-475
               

               
Cow position:
               
chr5:32697029-32696704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
137-503
               

               
Cow position:
               
chr5:11229890-11229525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
39, 137
               

               
Conread position:
               
137-503
               

               
Cow position:
               
chr5:28229941-28230311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
137-561
               

               
Cow position:
               
chr5:71454812-71454410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
137-562
               

               
Cow position:
               
chr5:3627384-3626958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 152
               

               
Conread position:
               
137-562
               

               
Cow position:
               
chr5:27154806-27155224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
137-562
               

               
Cow position:
               
chr5:47756552-47756994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
137-564
               

               
Cow position:
               
chr5:56523958-56524386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
138-486
               

               
Cow position:
               
chr5:45803846-45804191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
138-503
               

               
Cow position:
               
chr5:6504094-6503733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
138-553
               

               
Cow position:
               
chr5:66815791-66815378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
138-561
               

               
Cow position:
               
chr5:16893991-16893557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 135
               

               
Conread position:
               
138-564
               

               
Cow position:
               
chr5:26262886-26262461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
139-265
               

               
Cow position:
               
chr5:25935737-25935864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
139-379
               

               
Cow position:
               
chr5:50950340-50950579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chr5:16184876-16185133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
139-410
               

               
Cow position:
               
chr5:1766558-1766295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
139-423
               

               
Cow position:
               
chr5:54713951-54713665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
139-449
               

               
Cow position:
               
chr5:63103698-63104007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
139-490
               

               
Cow position:
               
chr5:52000006-52000353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
139-494
               

               
Cow position:
               
chr5:62107708-62107347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 130
               

               
Conread position:
               
139-498
               

               
Cow position:
               
chr5:5111290-5110926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
139-507
               

               
Cow position:
               
chr5:15478899-15479277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
139-509
               

               
Cow position:
               
chr5:19278905-19278553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
139-530
               

               
Cow position:
               
chr5:37646765-37646366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
139-530
               

               
Cow position:
               
chr5:39447745-39447359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
139-547
               

               
Cow position:
               
chr5:62142457-62142870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
139-562
               

               
Cow position:
               
chr5:27419935-27419526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
139-562
               

               
Cow position:
               
chr5:30276478-30276909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
139-562
               

               
Cow position:
               
chr5:32394386-32394824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 76
               

               
Conread position:
               
139-562
               

               
Cow position:
               
chr5:40152262-40152709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
139-562
               

               
Cow position:
               
chr5:47888928-47888508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
139-562
               

               
Cow position:
               
chr5:50722837-50723270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
139-562
               

               
Cow position:
               
chr5:64176334-64175908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
139-564
               

               
Cow position:
               
chr5:40928186-40927790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
140-562
               

               
Cow position:
               
chr5:41604400-41604826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
141-309
               

               
Cow position:
               
chr5:14703178-14703016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
141-429
               

               
Cow position:
               
chr5:28456624-28456332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
25, 134
               

               
Conread position:
               
141-429
               

               
Cow position:
               
chr5:28459926-28459633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 134
               

               
Conread position:
               
141-472
               

               
Cow position:
               
chr5:31480943-31481264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
141-475
               

               
Cow position:
               
chr5:55989531-55989858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
141-480
               

               
Cow position:
               
chr5:37064883-37065222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 124
               

               
Conread position:
               
141-510
               

               
Cow position:
               
chr5:46510078-46509711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
141-557
               

               
Cow position:
               
chr5:58144815-58144387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
141-562
               

               
Cow position:
               
chr5:47601604-47602030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
141-564
               

               
Cow position:
               
chr5:55756652-55756189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
142-339
               

               
Cow position:
               
chr5:9859930-9859730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 126
               

               
Conread position:
               
142-434
               

               
Cow position:
               
chr5:32140916-32140630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
142-457
               

               
Cow position:
               
chr5:31918443-31918743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
142-476
               

               
Cow position:
               
chr5:34184008-34184342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
34, 146
               

               
Conread position:
               
142-500
               

               
Cow position:
               
chr5:6045076-6045441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
142-508
               

               
Cow position:
               
chr5:71494605-71494974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
142-554
               

               
Cow position:
               
chr5:57327578-57328011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 139
               

               
Conread position:
               
142-560
               

               
Cow position:
               
chr5:42063991-42064427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
142-561
               

               
Cow position:
               
chr5:12873536-12873973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
142-561
               

               
Cow position:
               
chr5:43923361-43922950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 126
               

               
Conread position:
               
142-564
               

               
Cow position:
               
chr5:9894337-9893901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
142-564
               

               
Cow position:
               
chr5:57935324-57934896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
143-326
               

               
Cow position:
               
chr5:37366687-37366868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 131
               

               
Conread position:
               
143-358
               

               
Cow position:
               
chr5:30816505-30816722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
143-395
               

               
Cow position:
               
chr5:14420555-14420297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
143-398
               

               
Cow position:
               
chr5:58460615-58460354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
143-402
               

               
Cow position:
               
chr5:37714115-37713848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 137
               

               
Conread position:
               
143-406
               

               
Cow position:
               
chr5:49362201-49361940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
143-411
               

               
Cow position:
               
chr5:43474637-43474905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
143-418
               

               
Cow position:
               
chr5:63840356-63840081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
143-434
               

               
Cow position:
               
chr5:13691785-13691489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
143-446
               

               
Cow position:
               
chr5:72172813-72173117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
143-449
               

               
Cow position:
               
chr5:8178968-8179275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 130
               

               
Conread position:
               
143-452
               

               
Cow position:
               
chr5:56820470-56820168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
96, 78
               

               
Conread position:
               
143-460
               

               
Cow position:
               
chr5:23140782-23140485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
143-460
               

               
Cow position:
               
chr5:47704344-47704022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
143-463
               

               
Cow position:
               
chr5:34638675-34638990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
143-474
               

               
Cow position:
               
chr5:52645288-52644962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
12, 69
               

               
Conread position:
               
143-483
               

               
Cow position:
               
chr5:38853150-38853476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
143-485
               

               
Cow position:
               
chr5:15598444-15598108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
143-486
               

               
Cow position:
               
chr5:54111708-54112044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
143-491
               

               
Cow position:
               
chr5:65933138-65932807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
143-492
               

               
Cow position:
               
chr5:75437107-75436751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 253
               

               
Conread position:
               
143-502
               

               
Cow position:
               
chr5:46323022-46322656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 111
               

               
Conread position:
               
143-504
               

               
Cow position:
               
chr5:4032199-4031837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
143-504
               

               
Cow position:
               
chr5:44054248-44053905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 111
               

               
Conread position:
               
143-504
               

               
Cow position:
               
chr5:55967093-55966734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
143-505
               

               
Cow position:
               
chr5:27306108-27306455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr5:35145142-35145481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
143-510
               

               
Cow position:
               
chr5:17087239-17086865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
143-510
               

               
Cow position:
               
chr5:24996434-24996068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
143-510
               

               
Cow position:
               
chr5:35969332-35969687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
143-510
               

               
Cow position:
               
chr5:42777554-42777904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
143-510
               

               
Cow position:
               
chr5:49685491-49685122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
143-520
               

               
Cow position:
               
chr5:46104146-46103797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
143-520
               

               
Cow position:
               
chr5:55942608-55942213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
143-524
               

               
Cow position:
               
chr5:21040184-21039816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
143-524
               

               
Cow position:
               
chr5:65776596-65776218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
143-527
               

               
Cow position:
               
chr5:6683558-6683193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
143-539
               

               
Cow position:
               
chr5:26377877-26377484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
143-539
               

               
Cow position:
               
chr5:36855002-36855391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
143-543
               

               
Cow position:
               
chr5:37645863-37646275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
143-545
               

               
Cow position:
               
chr5:4617163-4617548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
143-551
               

               
Cow position:
               
chr5:54350571-54350163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
143-555
               

               
Cow position:
               
chr5:45226034-45225609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
143-555
               

               
Cow position:
               
chr5:60210349-60209931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
143-560
               

               
Cow position:
               
chr5:17999705-17999276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
143-560
               

               
Cow position:
               
chr5:34442002-34441580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
143-561
               

               
Cow position:
               
chr5:14550796-14550361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
143-561
               

               
Cow position:
               
chr5:20127844-20128275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
143-561
               

               
Cow position:
               
chr5:72007062-72006661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:1247066-1247485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:3771636-3772064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 80
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:6528470-6528886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:14314312-14314738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:16938218-16937812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:21828654-21829086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:22737895-22738319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:26467410-26467849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:35684724-35685155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 129
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:37942003-37941585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:38832910-38833336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:44848227-44847805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:47547927-47547524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:47871261-47870832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
143-562
               

               
Cow position:
               
chr5:57074545-57074115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
143-563
               

               
Cow position:
               
chr5:44796928-44796513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
143-563
               

               
Cow position:
               
chr5:55176677-55177103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
143-563
               

               
Cow position:
               
chr5:72564552-72564963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:2309775-2309334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 132
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:6572541-6572955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:8024402-8023991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:26990183-26990600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:28324135-28324584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 135
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:43858638-43858194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 49
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:51502802-51503197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:59873616-59873193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:64321538-64321985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 131
               

               
Conread position:
               
143-564
               

               
Cow position:
               
chr5:65941464-65941026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
144-322
               

               
Cow position:
               
chr5:69099319-69099495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
144-334
               

               
Cow position:
               
chr5:50729286-50729473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
144-359
               

               
Cow position:
               
chr5:34288679-34288467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
144-387
               

               
Cow position:
               
chr5:694377-694608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
144-389
               

               
Cow position:
               
chr5:6130142-6130389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
144-390
               

               
Cow position:
               
chr5:2288769-2288513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
144-390
               

               
Cow position:
               
chr5:58005034-58005282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
144-394
               

               
Cow position:
               
chr5:45036812-45037054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
144-409
               

               
Cow position:
               
chr5:27403453-27403176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
32, 132
               

               
Conread position:
               
144-416
               

               
Cow position:
               
chr5:12709676-12709949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
144-419
               

               
Cow position:
               
chr5:54405105-54404827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 129
               

               
Conread position:
               
144-421
               

               
Cow position:
               
chr5:62826963-62826686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
144-426
               

               
Cow position:
               
chr5:2500397-2500109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
144-434
               

               
Cow position:
               
chr5:70102018-70101745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
144-441
               

               
Cow position:
               
chr5:46122559-46122268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
144-443
               

               
Cow position:
               
chr5:29212739-29213025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
144-450
               

               
Cow position:
               
chr5:40889493-40889203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
144-451
               

               
Cow position:
               
chr5:44583328-44583017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
144-454
               

               
Cow position:
               
chr5:16508886-16509204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
144-456
               

               
Cow position:
               
chr5:21524955-21525259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
32, 127
               

               
Conread position:
               
144-457
               

               
Cow position:
               
chr5:61600203-61600508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
32, 127
               

               
Conread position:
               
144-458
               

               
Cow position:
               
chr5:3281622-3281937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
32, 127
               

               
Conread position:
               
144-458
               

               
Cow position:
               
chr5:28330541-28330241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
144-460
               

               
Cow position:
               
chr5:4507170-4506861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
144-460
               

               
Cow position:
               
chr5:5938115-5938426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
144-460
               

               
Cow position:
               
chr5:31469792-31469489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 20
               

               
Conread position:
               
144-460
               

               
Cow position:
               
chr5:32153525-32153215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
144-460
               

               
Cow position:
               
chr5:39094344-39094654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
144-460
               

               
Cow position:
               
chr5:68871983-68872297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
144-472
               

               
Cow position:
               
chr5:5201707-5202017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
144-475
               

               
Cow position:
               
chr5:50637620-50637940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
144-476
               

               
Cow position:
               
chr5:58793824-58793487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
144-482
               

               
Cow position:
               
chr5:64823522-64823178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 126
               

               
Conread position:
               
144-484
               

               
Cow position:
               
chr5:1105080-1104751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
144-490
               

               
Cow position:
               
chr5:28927802-28927458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
32, 125
               

               
Conread position:
               
144-494
               

               
Cow position:
               
chr5:65887224-65886872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
144-494
               

               
Cow position:
               
chr5:68604649-68604992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
144-498
               

               
Cow position:
               
chr5:5257506-5257145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
144-499
               

               
Cow position:
               
chr5:59326038-59325697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
144-500
               

               
Cow position:
               
chr5:4710352-4710007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
144-503
               

               
Cow position:
               
chr5:12149336-12149693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
144-503
               

               
Cow position:
               
chr5:36868536-36868883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
144-503
               

               
Cow position:
               
chr5:43992116-43992472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 33
               

               
Conread position:
               
144-503
               

               
Cow position:
               
chr5:61576330-61576693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
144-504
               

               
Cow position:
               
chr5:52165392-52165030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
144-504
               

               
Cow position:
               
chr5:56070644-56071009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
144-504
               

               
Cow position:
               
chr5:67932671-67932323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
144-507
               

               
Cow position:
               
chr5:31640218-31640577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
32, 122
               

               
Conread position:
               
144-510
               

               
Cow position:
               
chr5:9090233-9089873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 130
               

               
Conread position:
               
144-510
               

               
Cow position:
               
chr5:58855894-58856257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
144-510
               

               
Cow position:
               
chr5:64137042-64137413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
144-514
               

               
Cow position:
               
chr5:61725760-61726122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 118
               

               
Conread position:
               
144-517
               

               
Cow position:
               
chr5:35826381-35826763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
32, 137
               

               
Conread position:
               
144-539
               

               
Cow position:
               
chr5:33661645-33662030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
144-549
               

               
Cow position:
               
chr5:24348902-24349299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
144-550
               

               
Cow position:
               
chr5:15722264-15721878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
144-551
               

               
Cow position:
               
chr5:63964382-63963981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 127
               

               
Conread position:
               
144-552
               

               
Cow position:
               
chr5:29353339-29352920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 42
               

               
Conread position:
               
144-558
               

               
Cow position:
               
chr5:30844901-30845324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
144-560
               

               
Cow position:
               
chr5:3491992-3492405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
144-561
               

               
Cow position:
               
chr5:1950270-1949856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
144-562
               

               
Cow position:
               
chr5:11427451-11427014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
144-562
               

               
Cow position:
               
chr5:30253535-30253962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 31
               

               
Conread position:
               
144-562
               

               
Cow position:
               
chr5:47317178-47316753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
144-562
               

               
Cow position:
               
chr5:56467491-56467892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
144-563
               

               
Cow position:
               
chr5:4551922-4552358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
32, 150
               

               
Conread position:
               
144-563
               

               
Cow position:
               
chr5:40388075-40387678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
144-563
               

               
Cow position:
               
chr5:41164878-41165305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 99
               

               
Conread position:
               
144-564
               

               
Cow position:
               
chr5:28224245-28224666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 74
               

               
Conread position:
               
144-564
               

               
Cow position:
               
chr5:48757734-48758145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
145-325
               

               
Cow position:
               
chr5:63917620-63917444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
10, 94
               

               
Conread position:
               
145-425
               

               
Cow position:
               
chr5:21964077-21964358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
145-476
               

               
Cow position:
               
chr5:65588500-65588819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
145-503
               

               
Cow position:
               
chr5:45705838-45706182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
145-509
               

               
Cow position:
               
chr5:60715565-60715214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
145-563
               

               
Cow position:
               
chr5:24175162-24175574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
146-472
               

               
Cow position:
               
chr5:4322202-4322528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
146-497
               

               
Cow position:
               
chr5:14904280-14903926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
147-348
               

               
Cow position:
               
chr5:72845979-72845787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
147-357
               

               
Cow position:
               
chr5:6986952-6987165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
147-386
               

               
Cow position:
               
chr5:19470393-19470158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
147-387
               

               
Cow position:
               
chr5:51357710-51357468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
147-388
               

               
Cow position:
               
chr5:30639058-30638829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
147-389
               

               
Cow position:
               
chr5:59443458-59443213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
147-403
               

               
Cow position:
               
chr5:26790658-26790408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
147-409
               

               
Cow position:
               
chr5:41523002-41522747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
147-414
               

               
Cow position:
               
chr5:32956298-32956036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 30
               

               
Conread position:
               
147-418
               

               
Cow position:
               
chr5:56433592-56433863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 129
               

               
Conread position:
               
147-436
               

               
Cow position:
               
chr5:28926394-28926100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
147-439
               

               
Cow position:
               
chr5:47313267-47313556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
147-443
               

               
Cow position:
               
chr5:41951291-41951009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
147-458
               

               
Cow position:
               
chr5:65601254-65601559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
147-460
               

               
Cow position:
               
chr5:41303297-41302974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
147-482
               

               
Cow position:
               
chr5:42744587-42744907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
147-483
               

               
Cow position:
               
chr5:44049496-44049825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
147-486
               

               
Cow position:
               
chr5:15426319-15426669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
27, 119
               

               
Conread position:
               
147-499
               

               
Cow position:
               
chr5:29771308-29771672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 132
               

               
Conread position:
               
147-502
               

               
Cow position:
               
chr5:63987654-63987298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
147-504
               

               
Cow position:
               
chr5:18573963-18574323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
147-504
               

               
Cow position:
               
chr5:37377669-37378003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
147-504
               

               
Cow position:
               
chr5:40357077-40356709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
147-510
               

               
Cow position:
               
chr5:44752517-44752152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
147-515
               

               
Cow position:
               
chr5:43738158-43737804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
147-520
               

               
Cow position:
               
chr5:28016940-28017292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
147-552
               

               
Cow position:
               
chr5:26097089-26097502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
147-555
               

               
Cow position:
               
chr5:17063300-17062864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
147-559
               

               
Cow position:
               
chr5:20779588-20779180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
147-560
               

               
Cow position:
               
chr5:42845807-42845377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
147-561
               

               
Cow position:
               
chr5:51053854-51053427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
147-561
               

               
Cow position:
               
chr5:62870244-62869842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:59135-58708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:4280257-4280666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:11668385-11667962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:17027888-17028298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:22242994-22242552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:30302689-30303103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:35208055-35208485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:45845902-45845468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
30, 126
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:58519605-58519194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
147-562
               

               
Cow position:
               
chr5:69337622-69338036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
147-563
               

               
Cow position:
               
chr5:27007689-27008098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 151
               

               
Conread position:
               
147-564
               

               
Cow position:
               
chr5:3242680-3242271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
147-564
               

               
Cow position:
               
chr5:21617249-21617679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
148-406
               

               
Cow position:
               
chr5:3281078-3280820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 93
               

               
Conread position:
               
148-457
               

               
Cow position:
               
chr5:61839981-61840289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
148-470
               

               
Cow position:
               
chr5:35209682-35209363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
148-474
               

               
Cow position:
               
chr5:20407872-20407560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
148-503
               

               
Cow position:
               
chr5:59082402-59082046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
148-504
               

               
Cow position:
               
chr5:37190305-37189948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
148-504
               

               
Cow position:
               
chr5:54086330-54086687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
148-507
               

               
Cow position:
               
chr5:360152-359787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
148-510
               

               
Cow position:
               
chr5:64758969-64758616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
148-562
               

               
Cow position:
               
chr5:72903433-72903018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
148-563
               

               
Cow position:
               
chr5:30487038-30487450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
148-563
               

               
Cow position:
               
chr5:50943358-50942937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
149-419
               

               
Cow position:
               
chr5:41531291-41531022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
149-510
               

               
Cow position:
               
chr5:23169023-23168671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
150-462
               

               
Cow position:
               
chr5:26370495-26370789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr5:29827850-29828193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
150-561
               

               
Cow position:
               
chr5:29903725-29903322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 70
               

               
Conread position:
               
151-434
               

               
Cow position:
               
chr5:55821164-55821454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
152-414
               

               
Cow position:
               
chr5:1027893-1027636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
152-562
               

               
Cow position:
               
chr5:63647676-63647255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
153-372
               

               
Cow position:
               
chr5:42747958-42748176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
22, 5
               

               
Conread position:
               
153-464
               

               
Cow position:
               
chr5:33414607-33414303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 5
               

               
Conread position:
               
154-347
               

               
Cow position:
               
chr5:14415573-14415765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
154-348
               

               
Cow position:
               
chr5:51490953-51490765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
154-350
               

               
Cow position:
               
chr5:31434066-31434256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
154-351
               

               
Cow position:
               
chr5:32963829-32963635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
154-392
               

               
Cow position:
               
chr5:8994765-8994527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
154-392
               

               
Cow position:
               
chr5:23856361-23856122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
154-416
               

               
Cow position:
               
chr5:42667588-42667327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
154-433
               

               
Cow position:
               
chr5:10261438-10261157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
17, 125
               

               
Conread position:
               
154-460
               

               
Cow position:
               
chr5:45409126-45409427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
154-477
               

               
Cow position:
               
chr5:9390336-9390678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
24, 247
               

               
Conread position:
               
154-503
               

               
Cow position:
               
chr5:26094369-26094018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
154-510
               

               
Cow position:
               
chr5:65752657-65753012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
154-560
               

               
Cow position:
               
chr5:32975751-32975338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 82
               

               
Conread position:
               
154-562
               

               
Cow position:
               
chr5:7044909-7044484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
157-396
               

               
Cow position:
               
chr5:46499102-46499341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
157-448
               

               
Cow position:
               
chr5:33080985-33080700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
157-472
               

               
Cow position:
               
chr5:45170166-45170472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
157-557
               

               
Cow position:
               
chr5:34049913-34050325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 115
               

               
Conread position:
               
157-560
               

               
Cow position:
               
chr5:15363694-15364090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 109
               

               
Conread position:
               
158-503
               

               
Cow position:
               
chr5:7193236-7193565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
158-564
               

               
Cow position:
               
chr5:34561813-34562233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
159-460
               

               
Cow position:
               
chr5:8163018-8162714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
159-564
               

               
Cow position:
               
chr5:16025655-16025259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 107
               

               
Conread position:
               
160-417
               

               
Cow position:
               
chr5:65924892-65924627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
160-470
               

               
Cow position:
               
chr5:37425549-37425857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
160-485
               

               
Cow position:
               
chr5:39299334-39299659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
160-495
               

               
Cow position:
               
chr5:75244483-75244139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
160-502
               

               
Cow position:
               
chr5:44994231-44993902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
160-504
               

               
Cow position:
               
chr5:50215752-50215415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
18, 103
               

               
Conread position:
               
160-521
               

               
Cow position:
               
chr5:6839272-6838912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
160-554
               

               
Cow position:
               
chr5:22643411-22643033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
160-562
               

               
Cow position:
               
chr5:42677041-42677421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
161-325
               

               
Cow position:
               
chr5:50870349-50870512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
12, 103
               

               
Conread position:
               
161-402
               

               
Cow position:
               
chr5:7140297-7140060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
162-403
               

               
Cow position:
               
chr5:44587485-44587234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
162-489
               

               
Cow position:
               
chr5:74610883-74610568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
162-502
               

               
Cow position:
               
chr5:74858382-74858722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
163-485
               

               
Cow position:
               
chr5:17371891-17371569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr5:4220790-4221124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 106
               

               
Conread position:
               
163-549
               

               
Cow position:
               
chr5:69461144-69461541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
164-460
               

               
Cow position:
               
chr5:52040509-52040219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
164-500
               

               
Cow position:
               
chr5:47323264-47323607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
167-503
               

               
Cow position:
               
chr5:1987432-1987762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
181, 85
               

               
Conread position:
               
168-562
               

               
Cow position:
               
chr5:52667844-52668261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
172-553
               

               
Cow position:
               
chr5:6286606-6286239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
67, 45
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chr5:30178689-30178410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
158, 53
               

               
Conread position:
               
174-447
               

               
Cow position:
               
chr5:35231362-35231633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
174-460
               

               
Cow position:
               
chr5:57266075-57265800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
174-460
               

               
Cow position:
               
chr5:57591513-57591792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
65, 95
               

               
Conread position:
               
174-472
               

               
Cow position:
               
chr5:55928765-55929060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
115, 58
               

               
Conread position:
               
174-478
               

               
Cow position:
               
chr5:279332-279029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
174-478
               

               
Cow position:
               
chr5:7498137-7497834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
174-478
               

               
Cow position:
               
chr5:49522551-49522852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
174-479
               

               
Cow position:
               
chr5:59438990-59439295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
174-510
               

               
Cow position:
               
chr5:51935005-51935344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 183
               

               
Conread position:
               
174-562
               

               
Cow position:
               
chr5:1688290-1687894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
175-426
               

               
Cow position:
               
chr5:28957793-28957544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 89
               

               
Conread position:
               
175-460
               

               
Cow position:
               
chr5:60952484-60952764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
175-482
               

               
Cow position:
               
chr5:57575589-57575899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
65, 95
               

               
Conread position:
               
175-495
               

               
Cow position:
               
chr5:31217235-31216914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
175-501
               

               
Cow position:
               
chr5:37808841-37808517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 43
               

               
Conread position:
               
175-522
               

               
Cow position:
               
chr5:51151539-51151189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
64, 97
               

               
Conread position:
               
175-562
               

               
Cow position:
               
chr5:29061101-29060717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
176-410
               

               
Cow position:
               
chr5:43816786-43816549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
61, 8
               

               
Conread position:
               
176-415
               

               
Cow position:
               
chr5:75746131-75746353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 96
               

               
Conread position:
               
176-460
               

               
Cow position:
               
chr5:59631306-59631578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
63, 93
               

               
Conread position:
               
176-521
               

               
Cow position:
               
chr5:19778759-19778407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
176-562
               

               
Cow position:
               
chr5:45472090-45472496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
63, 54
               

               
Conread position:
               
176-563
               

               
Cow position:
               
chr5:62638730-62639108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
177-326
               

               
Cow position:
               
chr5:45026092-45025951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 41
               

               
Conread position:
               
177-422
               

               
Cow position:
               
chr5:29980160-29979916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
58, 51
               

               
Conread position:
               
178-394
               

               
Cow position:
               
chr5:17644829-17644614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
178-543
               

               
Cow position:
               
chr5:41713136-41713488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 27
               

               
Conread position:
               
182-504
               

               
Cow position:
               
chr5:16206330-16206006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
184-504
               

               
Cow position:
               
chr5:56317127-56317438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
55, 80
               

               
Conread position:
               
184-510
               

               
Cow position:
               
chr5:12866996-12866673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
56, 213
               

               
Conread position:
               
184-510
               

               
Cow position:
               
chr5:30950087-30949760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 86
               

               
Conread position:
               
184-561
               

               
Cow position:
               
chr5:12322968-12322590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
169, 34
               

               
Conread position:
               
184-562
               

               
Cow position:
               
chr5:41010164-41009788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 80
               

               
Conread position:
               
184-563
               

               
Cow position:
               
chr5:7723503-7723867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 42
               

               
Conread position:
               
185-408
               

               
Cow position:
               
chr5:27015514-27015732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
185-564
               

               
Cow position:
               
chr5:36616425-36616790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
187-431
               

               
Cow position:
               
chr5:56443117-56443350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
163, 52
               

               
Conread position:
               
187-494
               

               
Cow position:
               
chr5:14629980-14629666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
187-510
               

               
Cow position:
               
chr5:34887362-34887040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
188-456
               

               
Cow position:
               
chr5:69520727-69520991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
188-504
               

               
Cow position:
               
chr5:62985353-62985661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
51, 117
               

               
Conread position:
               
188-562
               

               
Cow position:
               
chr5:46512930-46512546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
190-502
               

               
Cow position:
               
chr5:12673626-12673331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
193-562
               

               
Cow position:
               
chr5:23529435-23529080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
195-562
               

               
Cow position:
               
chr5:49919772-49920147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
197-392
               

               
Cow position:
               
chr5:20345002-20345200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
197-431
               

               
Cow position:
               
chr5:21920213-21920455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
197-510
               

               
Cow position:
               
chr5:54060119-54060431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
197-510
               

               
Cow position:
               
chr5:59115226-59115534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 39
               

               
Conread position:
               
197-524
               

               
Cow position:
               
chr5:65967886-65967560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 67
               

               
Conread position:
               
197-558
               

               
Cow position:
               
chr5:47696597-47696242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
197-558
               

               
Cow position:
               
chr5:55232947-55232605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
272, 22
               

               
Conread position:
               
197-562
               

               
Cow position:
               
chr5:35247265-35246885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
197-562
               

               
Cow position:
               
chr5:55068551-55068922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
197-562
               

               
Cow position:
               
chr5:66972269-66972652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
197-563
               

               
Cow position:
               
chr5:41452821-41452468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
197-563
               

               
Cow position:
               
chr5:55955751-55956133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
197-564
               

               
Cow position:
               
chr5:42050393-42050768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 75
               

               
Conread position:
               
198-562
               

               
Cow position:
               
chr5:3582419-3582777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
199-457
               

               
Cow position:
               
chr5:48829002-48829255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 70
               

               
Conread position:
               
200-320
               

               
Cow position:
               
chr5:61049204-61049325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 72
               

               
Conread position:
               
200-411
               

               
Cow position:
               
chr5:51801126-51800917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
200-562
               

               
Cow position:
               
chr5:58748611-58748970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
201-414
               

               
Cow position:
               
chr5:34115499-34115712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
201-549
               

               
Cow position:
               
chr5:50821628-50821978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
201-562
               

               
Cow position:
               
chr5:35459445-35459074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 36
               

               
Conread position:
               
202-562
               

               
Cow position:
               
chr5:30092779-30092406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
202-562
               

               
Cow position:
               
chr5:61809838-61809475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
204-460
               

               
Cow position:
               
chr5:36255411-36255153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
209-349
               

               
Cow position:
               
chr5:39242341-39242204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
8, 62
               

               
Conread position:
               
209-429
               

               
Cow position:
               
chr5:50972384-50972599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
209-472
               

               
Cow position:
               
chr5:65883922-65883656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
209-557
               

               
Cow position:
               
chr5:39874979-39875322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
210-379
               

               
Cow position:
               
chr5:44849868-44849706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
210-392
               

               
Cow position:
               
chr5:71579028-71579214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
7, 65
               

               
Conread position:
               
210-413
               

               
Cow position:
               
chr5:40169332-40169125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
210-415
               

               
Cow position:
               
chr5:23866306-23866112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
141, 52
               

               
Conread position:
               
210-443
               

               
Cow position:
               
chr5:67645281-67645051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 12
               

               
Conread position:
               
210-493
               

               
Cow position:
               
chr5:34463730-34463442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
210-497
               

               
Cow position:
               
chr5:66581818-66582105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
210-510
               

               
Cow position:
               
chr5:30629303-30629002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
210-562
               

               
Cow position:
               
chr5:7057545-7057175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 5
               

               
Conread position:
               
210-562
               

               
Cow position:
               
chr5:12761261-12760898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 118
               

               
Conread position:
               
210-564
               

               
Cow position:
               
chr5:56877343-56877694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
211-426
               

               
Cow position:
               
chr5:55750396-55750194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
211-489
               

               
Cow position:
               
chr5:27179521-27179790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
211-510
               

               
Cow position:
               
chr5:53855550-53855861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
212-488
               

               
Cow position:
               
chr5:40559501-40559766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
112, 23
               

               
Conread position:
               
212-562
               

               
Cow position:
               
chr5:35763135-35763466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
213-561
               

               
Cow position:
               
chr5:25035384-25035033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
214-451
               

               
Cow position:
               
chr5:73080066-73080300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
215-408
               

               
Cow position:
               
chr5:75230540-75230730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
215-476
               

               
Cow position:
               
chr5:67540343-67540081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
215-507
               

               
Cow position:
               
chr5:45574481-45574774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
215-536
               

               
Cow position:
               
chr5:61830009-61829677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
215-547
               

               
Cow position:
               
chr5:69731373-69731691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 36
               

               
Conread position:
               
215-562
               

               
Cow position:
               
chr5:11540188-11539830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
215-562
               

               
Cow position:
               
chr5:29097219-29097584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 184
               

               
Conread position:
               
215-563
               

               
Cow position:
               
chr5:16214547-16214904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
216-415
               

               
Cow position:
               
chr5:1678256-1678451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
108, 20
               

               
Conread position:
               
216-558
               

               
Cow position:
               
chr5:41636731-41637061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
217-392
               

               
Cow position:
               
chr5:7921538-7921366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
217-437
               

               
Cow position:
               
chr5:25447426-25447645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
107, 19
               

               
Conread position:
               
218-411
               

               
Cow position:
               
chr5:63763323-63763521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
218-415
               

               
Cow position:
               
chr5:30134103-30133902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
218-503
               

               
Cow position:
               
chr5:14473550-14473255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
106, 11
               

               
Conread position:
               
219-489
               

               
Cow position:
               
chr5:7755698-7755437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
219-564
               

               
Cow position:
               
chr5:73168134-73167790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 32
               

               
Conread position:
               
222-493
               

               
Cow position:
               
chr5:54048484-54048214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
222-504
               

               
Cow position:
               
chr5:53055693-53055412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
222-508
               

               
Cow position:
               
chr5:34300783-34301069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
222-562
               

               
Cow position:
               
chr5:991333-991696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
222-562
               

               
Cow position:
               
chr5:57768112-57767766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
222-562
               

               
Cow position:
               
chr5:69047495-69047164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
223-391
               

               
Cow position:
               
chr5:41486873-41486700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
223-502
               

               
Cow position:
               
chr5:54768042-54767762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
223-504
               

               
Cow position:
               
chr5:45273633-45273353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
223-510
               

               
Cow position:
               
chr5:44028433-44028154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
224-445
               

               
Cow position:
               
chr5:33552539-33552334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
224-500
               

               
Cow position:
               
chr5:38076611-38076338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
124, 15
               

               
Conread position:
               
224-510
               

               
Cow position:
               
chr5:63427137-63426847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
224-560
               

               
Cow position:
               
chr5:64140399-64140758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
224-562
               

               
Cow position:
               
chr5:28946199-28945858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
27, 173
               

               
Conread position:
               
225-503
               

               
Cow position:
               
chr5:1396485-1396747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
225-504
               

               
Cow position:
               
chr5:39258395-39258655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 22
               

               
Conread position:
               
225-504
               

               
Cow position:
               
chr5:44726456-44726184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
226-558
               

               
Cow position:
               
chr5:59057877-59057528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
95, 10
               

               
Conread position:
               
228-557
               

               
Cow position:
               
chr5:18289002-18289335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
228-564
               

               
Cow position:
               
chr5:31475555-31475907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
229-478
               

               
Cow position:
               
chr5:19335913-19335659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 40
               

               
Conread position:
               
229-562
               

               
Cow position:
               
chr5:56680121-56680454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
230-458
               

               
Cow position:
               
chr5:65765253-65765027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
230-495
               

               
Cow position:
               
chr5:60747398-60747141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
94, 6
               

               
Conread position:
               
230-510
               

               
Cow position:
               
chr5:3002793-3003061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
230-510
               

               
Cow position:
               
chr5:26477134-26476863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 6
               

               
Conread position:
               
232-503
               

               
Cow position:
               
chr5:19523775-19524048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
235-562
               

               
Cow position:
               
chr5:766715-767028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
244, 36
               

               
Conread position:
               
236-467
               

               
Cow position:
               
chr5:57561400-57561634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
236-504
               

               
Cow position:
               
chr5:53710811-53710540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
236-522
               

               
Cow position:
               
chr5:49440989-49440709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
236-556
               

               
Cow position:
               
chr5:33560851-33560522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
236-563
               

               
Cow position:
               
chr5:16179642-16179300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
239-458
               

               
Cow position:
               
chr5:76119436-76119650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
239-499
               

               
Cow position:
               
chr5:3639606-3639353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
85, 147
               

               
Conread position:
               
239-562
               

               
Cow position:
               
chr5:12901801-12902141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
239-562
               

               
Cow position:
               
chr5:37255445-37255111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
240-505
               

               
Cow position:
               
chr5:13717684-13717421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
240-535
               

               
Cow position:
               
chr5:4927680-4927387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
241-460
               

               
Cow position:
               
chr5:61999654-61999454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
241-502
               

               
Cow position:
               
chr5:32339076-32338819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
241-509
               

               
Cow position:
               
chr5:58446691-58446960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
241-524
               

               
Cow position:
               
chr5:7697893-7698170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
241-563
               

               
Cow position:
               
chr5:71846036-71845703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
242-539
               

               
Cow position:
               
chr5:57419904-57419600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
245-509
               

               
Cow position:
               
chr5:23678812-23678549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
246-403
               

               
Cow position:
               
chr5:60448108-60448263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
246-460
               

               
Cow position:
               
chr5:43371305-43371091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
246-476
               

               
Cow position:
               
chr5:56635793-56636015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
247-504
               

               
Cow position:
               
chr5:41293974-41294230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr5:48945368-48945101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
248-392
               

               
Cow position:
               
chr5:56469931-56469784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
249-458
               

               
Cow position:
               
chr5:34192794-34193008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
80, 21
               

               
Conread position:
               
249-564
               

               
Cow position:
               
chr5:12557396-12557063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
250-520
               

               
Cow position:
               
chr5:22188558-22188836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chr5:55019194-55019448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
257-494
               

               
Cow position:
               
chr5:57787704-57787945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
262-557
               

               
Cow position:
               
chr5:53946798-53947116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
52, 139
               

               
Conread position:
               
264-458
               

               
Cow position:
               
chr5:64555438-64555631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
264-564
               

               
Cow position:
               
chr5:35976426-35976718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
214, 66
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chr5:46129755-46129517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
265-510
               

               
Cow position:
               
chr5:46681807-46681565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
133, 33
               

               
Conread position:
               
265-530
               

               
Cow position:
               
chr5:46023152-46022891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
265-539
               

               
Cow position:
               
chr5:55796057-55795774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
265-562
               

               
Cow position:
               
chr5:5855774-5856082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
266-450
               

               
Cow position:
               
chr5:30406121-30406301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
266-504
               

               
Cow position:
               
chr5:35125960-35126204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
62, 79
               

               
Conread position:
               
266-510
               

               
Cow position:
               
chr5:59384783-59384531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
266-562
               

               
Cow position:
               
chr5:50575692-50575990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 81
               

               
Conread position:
               
266-564
               

               
Cow position:
               
chr5:35785068-35784782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
187, 45
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chr5:1087288-1087051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
55, 39
               

               
Conread position:
               
267-562
               

               
Cow position:
               
chr5:71015972-71015663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
269-562
               

               
Cow position:
               
chr5:61914480-61914793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
270-549
               

               
Cow position:
               
chr5:16939670-16939383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
207, 58
               

               
Conread position:
               
270-555
               

               
Cow position:
               
chr5:57527007-57526712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
270-562
               

               
Cow position:
               
chr5:33833955-33834262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
270-562
               

               
Cow position:
               
chr5:35229219-35228922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 62
               

               
Conread position:
               
270-562
               

               
Cow position:
               
chr5:36650461-36650777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 148
               

               
Conread position:
               
273-498
               

               
Cow position:
               
chr5:12556242-12556461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
204, 50
               

               
Conread position:
               
273-510
               

               
Cow position:
               
chr5:1165088-1165320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 115
               

               
Conread position:
               
273-557
               

               
Cow position:
               
chr5:61771028-61771339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 83
               

               
Conread position:
               
278-478
               

               
Cow position:
               
chr5:23357254-23357451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
278-495
               

               
Cow position:
               
chr5:37757907-37757699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
51, 72
               

               
Conread position:
               
278-504
               

               
Cow position:
               
chr5:54375588-54375353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
278-504
               

               
Cow position:
               
chr5:59873172-59872931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
278-509
               

               
Cow position:
               
chr5:62378710-62378934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
278-510
               

               
Cow position:
               
chr5:50713852-50713601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
279-417
               

               
Cow position:
               
chr5:36250454-36250594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
46, 74
               

               
Conread position:
               
279-560
               

               
Cow position:
               
chr5:29515570-29515304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
58, 25
               

               
Conread position:
               
279-564
               

               
Cow position:
               
chr5:42782797-42782524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
280-564
               

               
Cow position:
               
chr5:19752226-19752525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
46, 115
               

               
Conread position:
               
282-504
               

               
Cow position:
               
chr5:41981297-41981517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
68, 109
               

               
Conread position:
               
283-494
               

               
Cow position:
               
chr5:61492021-61492232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
283-520
               

               
Cow position:
               
chr5:57371724-57371968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
64, 54
               

               
Conread position:
               
283-562
               

               
Cow position:
               
chr5:57756107-57755812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
45, 112
               

               
Conread position:
               
283-563
               

               
Cow position:
               
chr5:30805092-30805372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
284-554
               

               
Cow position:
               
chr5:57994939-57994666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
286-485
               

               
Cow position:
               
chr5:37090712-37090510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
287-494
               

               
Cow position:
               
chr5:38689615-38689400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 117
               

               
Conread position:
               
287-530
               

               
Cow position:
               
chr5:63234898-63234657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
41, 114
               

               
Conread position:
               
288-564
               

               
Cow position:
               
chr5:28035669-28035947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
9, 110
               

               
Conread position:
               
290-486
               

               
Cow position:
               
chr5:1461018-1461220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 101
               

               
Conread position:
               
292-504
               

               
Cow position:
               
chr5:45420202-45419988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
7, 69
               

               
Conread position:
               
293-511
               

               
Cow position:
               
chr5:67212290-67212516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
295-494
               

               
Cow position:
               
chr5:43604079-43604276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
295-497
               

               
Cow position:
               
chr5:27188066-27188257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
295-508
               

               
Cow position:
               
chr5:11769204-11769425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 125
               

               
Conread position:
               
295-560
               

               
Cow position:
               
chr5:59627038-59626752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
296-460
               

               
Cow position:
               
chr5:11965392-11965226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
296-562
               

               
Cow position:
               
chr5:7012911-7012627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 102
               

               
Conread position:
               
299-510
               

               
Cow position:
               
chr5:63059009-63059216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
300-562
               

               
Cow position:
               
chr5:63627584-63627318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
301-561
               

               
Cow position:
               
chr5:61455787-61456068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
27, 99
               

               
Conread position:
               
302-504
               

               
Cow position:
               
chr5:57156371-57156163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
302-539
               

               
Cow position:
               
chr5:57686793-57686545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
302-562
               

               
Cow position:
               
chr5:63831870-63832138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
303-510
               

               
Cow position:
               
chr5:56339074-56338866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
306-564
               

               
Cow position:
               
chr5:71768540-71768284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
177, 44
               

               
Conread position:
               
310-508
               

               
Cow position:
               
chr5:61784775-61784574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
311-562
               

               
Cow position:
               
chr5:36838912-36839169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
311-562
               

               
Cow position:
               
chr5:45404993-45405269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
312-510
               

               
Cow position:
               
chr5:58555093-58555292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
312-555
               

               
Cow position:
               
chr5:48867504-48867255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
312-561
               

               
Cow position:
               
chr5:56153571-56153820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
313-495
               

               
Cow position:
               
chr5:2851546-2851730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 103
               

               
Conread position:
               
313-562
               

               
Cow position:
               
chr5:50101420-50101156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
316-554
               

               
Cow position:
               
chr5:38717275-38717509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
319-482
               

               
Cow position:
               
chr5:60188952-60189120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
320-537
               

               
Cow position:
               
chr5:453524-453745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
157, 57
               

               
Conread position:
               
320-563
               

               
Cow position:
               
chr5:20995130-20994866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
321-556
               

               
Cow position:
               
chr5:61007031-61007280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
322-562
               

               
Cow position:
               
chr5:30247553-30247303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
155, 19
               

               
Conread position:
               
323-500
               

               
Cow position:
               
chr5:49501857-49501679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
323-510
               

               
Cow position:
               
chr5:3588994-3589184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
323-561
               

               
Cow position:
               
chr5:57101558-57101305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
323-562
               

               
Cow position:
               
chr5:52001653-52001402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 41
               

               
Conread position:
               
323-563
               

               
Cow position:
               
chr5:34914587-34914353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
323-564
               

               
Cow position:
               
chr5:40237181-40237412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
324-485
               

               
Cow position:
               
chr5:45574399-45574235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:38739430-38739255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
324-510
               

               
Cow position:
               
chr5:9369298-9369116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
154, 27
               

               
Conread position:
               
325-562
               

               
Cow position:
               
chr5:15470902-15471140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
326-510
               

               
Cow position:
               
chr5:52108296-52108113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
328-504
               

               
Cow position:
               
chr5:61875515-61875686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
328-512
               

               
Cow position:
               
chr5:57230367-57230180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
328-555
               

               
Cow position:
               
chr5:46672178-46672429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
335-562
               

               
Cow position:
               
chr5:25597816-25598047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
338-500
               

               
Cow position:
               
chr5:57150651-57150812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
338-504
               

               
Cow position:
               
chr5:2827358-2827522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
141, 56
               

               
Conread position:
               
339-502
               

               
Cow position:
               
chr5:56287519-56287355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
26, 52
               

               
Conread position:
               
339-564
               

               
Cow position:
               
chr5:65552721-65552497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
139, 17
               

               
Conread position:
               
342-562
               

               
Cow position:
               
chr5:53935558-53935332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
346-504
               

               
Cow position:
               
chr5:60908658-60908813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
128, 43
               

               
Conread position:
               
347-504
               

               
Cow position:
               
chr5:35513207-35513364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
347-530
               

               
Cow position:
               
chr5:18062324-18062144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
131, 12
               

               
Conread position:
               
347-562
               

               
Cow position:
               
chr5:17566445-17566221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
348-504
               

               
Cow position:
               
chr5:24946236-24946389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
348-562
               

               
Cow position:
               
chr5:52852967-52853189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
131, 8
               

               
Conread position:
               
348-563
               

               
Cow position:
               
chr5:4267664-4267883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
349-500
               

               
Cow position:
               
chr5:27293889-27293739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
129, 45
               

               
Conread position:
               
349-510
               

               
Cow position:
               
chr5:51490250-51490092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
129, 40
               

               
Conread position:
               
350-493
               

               
Cow position:
               
chr5:25020771-25020631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
350-494
               

               
Cow position:
               
chr5:52723572-52723712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
350-510
               

               
Cow position:
               
chr5:55129339-55129498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
350-562
               

               
Cow position:
               
chr5:60515033-60514803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
351-496
               

               
Cow position:
               
chr5:63656474-63656618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
351-558
               

               
Cow position:
               
chr5:65679973-65679764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
351-562
               

               
Cow position:
               
chr5:57062533-57062306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
351-563
               

               
Cow position:
               
chr5:69383252-69383474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
147, 40
               

               
Conread position:
               
352-459
               

               
Cow position:
               
chr5:14742212-14742317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
352-504
               

               
Cow position:
               
chr5:56361792-56361942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
352-564
               

               
Cow position:
               
chr5:56613567-56613339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
353-562
               

               
Cow position:
               
chr5:61049331-61049556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
353-563
               

               
Cow position:
               
chr5:44163370-44163150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
354-499
               

               
Cow position:
               
chr5:4226347-4226490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
354-502
               

               
Cow position:
               
chr5:67634517-67634367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
354-562
               

               
Cow position:
               
chr5:38631023-38631217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
354-564
               

               
Cow position:
               
chr5:6520011-6520230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
66, 28
               

               
Conread position:
               
355-563
               

               
Cow position:
               
chr5:44722512-44722290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
357-562
               

               
Cow position:
               
chr5:26497674-26497466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
358-497
               

               
Cow position:
               
chr5:12738550-12738417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
359-476
               

               
Cow position:
               
chr5:55350907-55350790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 40
               

               
Conread position:
               
359-486
               

               
Cow position:
               
chr5:43844658-43844532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
359-504
               

               
Cow position:
               
chr5:3743327-3743469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
359-510
               

               
Cow position:
               
chr5:11289388-11289233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 52
               

               
Conread position:
               
359-557
               

               
Cow position:
               
chr5:30561937-30562145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
359-562
               

               
Cow position:
               
chr5:11562718-11562506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
359-562
               

               
Cow position:
               
chr5:48918815-48919020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
118, 8
               

               
Conread position:
               
359-562
               

               
Cow position:
               
chr5:59627105-59627314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
119, 24
               

               
Conread position:
               
361-504
               

               
Cow position:
               
chr5:26723455-26723597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
361-564
               

               
Cow position:
               
chr5:60948140-60948356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
362-562
               

               
Cow position:
               
chr5:5016437-5016645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
116, 21
               

               
Conread position:
               
364-563
               

               
Cow position:
               
chr5:75228189-75227990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
365-562
               

               
Cow position:
               
chr5:34533336-34533543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
366-510
               

               
Cow position:
               
chr5:17602194-17602050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
367-503
               

               
Cow position:
               
chr5:12299924-12300059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
367-562
               

               
Cow position:
               
chr5:7177163-7177374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
371-504
               

               
Cow position:
               
chr5:49260019-49259890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
372-562
               

               
Cow position:
               
chr5:63173027-63172826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
105, 38
               

               
Conread position:
               
374-510
               

               
Cow position:
               
chr5:54436776-54436908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
374-558
               

               
Cow position:
               
chr5:47743648-47743839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
375-556
               

               
Cow position:
               
chr5:51233998-51233808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
102, 10
               

               
Conread position:
               
376-564
               

               
Cow position:
               
chr5:53145730-53145543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
377-501
               

               
Cow position:
               
chr5:35725879-35725752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
379-564
               

               
Cow position:
               
chr5:21003339-21003523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
380-533
               

               
Cow position:
               
chr5:57744900-57744746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
34, 134
               

               
Conread position:
               
383-534
               

               
Cow position:
               
chr5:4347677-4347524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
383-552
               

               
Cow position:
               
chr5:38040537-38040356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
383-561
               

               
Cow position:
               
chr5:36143014-36143199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
117, 24
               

               
Conread position:
               
383-562
               

               
Cow position:
               
chr5:54127316-54127509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
384-562
               

               
Cow position:
               
chr5:19079280-19079465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
94, 73
               

               
Conread position:
               
384-562
               

               
Cow position:
               
chr5:35190138-35190328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
385-503
               

               
Cow position:
               
chr5:20882595-20882476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
385-524
               

               
Cow position:
               
chr5:38382770-38382632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
126, 99
               

               
Conread position:
               
385-562
               

               
Cow position:
               
chr5:16185407-16185602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
385-562
               

               
Cow position:
               
chr5:30638550-30638382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
47, 115
               

               
Conread position:
               
386-530
               

               
Cow position:
               
chr5:64843941-64843799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 121
               

               
Conread position:
               
386-539
               

               
Cow position:
               
chr5:51125979-51125822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
386-552
               

               
Cow position:
               
chr5:20812576-20812761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
386-555
               

               
Cow position:
               
chr5:42752938-42753111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
387-500
               

               
Cow position:
               
chr5:54099821-54099935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
387-502
               

               
Cow position:
               
chr5:42623148-42623033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
387-504
               

               
Cow position:
               
chr5:45037281-45037398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
387-504
               

               
Cow position:
               
chr5:70353953-70353834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
387-510
               

               
Cow position:
               
chr5:51490571-51490447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
387-550
               

               
Cow position:
               
chr5:4864574-4864745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
387-553
               

               
Cow position:
               
chr5:53795056-53795234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
387-554
               

               
Cow position:
               
chr5:53980723-53980538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
387-555
               

               
Cow position:
               
chr5:16668728-16668908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
387-560
               

               
Cow position:
               
chr5:62011714-62011902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
387-561
               

               
Cow position:
               
chr5:44734694-44734506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
387-562
               

               
Cow position:
               
chr5:36822918-36823091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
387-563
               

               
Cow position:
               
chr5:694895-695077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
388-503
               

               
Cow position:
               
chr5:4956580-4956464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
388-563
               

               
Cow position:
               
chr5:20126935-20127130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
390-562
               

               
Cow position:
               
chr5:17104887-17105067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
390-562
               

               
Cow position:
               
chr5:51289557-51289379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
111, 27
               

               
Conread position:
               
390-563
               

               
Cow position:
               
chr5:60523769-60523950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
391-562
               

               
Cow position:
               
chr5:7676120-7675936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
391-562
               

               
Cow position:
               
chr5:12562725-12562538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
391-563
               

               
Cow position:
               
chr5:22186454-22186629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
391-563
               

               
Cow position:
               
chr5:49821463-49821654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
394-562
               

               
Cow position:
               
chr5:31648460-31648637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
396-530
               

               
Cow position:
               
chr5:48062077-48061944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
397-539
               

               
Cow position:
               
chr5:1027428-1027278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
397-562
               

               
Cow position:
               
chr5:33513685-33513515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
398-498
               

               
Cow position:
               
chr5:17644586-17644485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
399-510
               

               
Cow position:
               
chr5:29979915-29979803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
399-562
               

               
Cow position:
               
chr5:56327678-56327504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
402-512
               

               
Cow position:
               
chr5:36251158-36251269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
407-558
               

               
Cow position:
               
chr5:52029458-52029622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
408-558
               

               
Cow position:
               
chr5:58401621-58401783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
408-563
               

               
Cow position:
               
chr5:12668932-12668769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
417-562
               

               
Cow position:
               
chr5:57447605-57447442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
417-564
               

               
Cow position:
               
chr5:8136532-8136683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 137
               

               
Conread position:
               
418-563
               

               
Cow position:
               
chr5:47353495-47353635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
60, 28
               

               
Conread position:
               
418-564
               

               
Cow position:
               
chr5:12478896-12478749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
419-558
               

               
Cow position:
               
chr5:26790261-26790113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
430-562
               

               
Cow position:
               
chr5:58487449-58487595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
433-563
               

               
Cow position:
               
chr5:71387284-71387422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
436-562
               

               
Cow position:
               
chr5:14419930-14419795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 88
               

               
Conread position:
               
439-563
               

               
Cow position:
               
chr5:22898226-22898096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 102
               

               
Conread position:
               
439-564
               

               
Cow position:
               
chr5:29213244-29213370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
442-563
               

               
Cow position:
               
chr5:22923505-22923627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 49
               
Show alignments to all cow chromosomes.