Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8055I03.5
        

               Conread position:
               973-1348
               

               Cow position:
               chr1:61565041-61564649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               266
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               12, 230
               

               Conread position:
               1014-1311
               

               Cow position:
               chr1:26427674-26427972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               77, 24
               

               Conread position:
               1015-1222
               

               Cow position:
               chr1:88112060-88111856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               55, 9
               

               Conread position:
               1018-1230
               

               Cow position:
               chr1:38205669-38205447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               1033-1348
               

               Cow position:
               chr1:100400014-100400349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               1046-1348
               

               Cow position:
               chr1:46218728-46218434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               215
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               172, 14
               

               Conread position:
               1051-1338
               

               Cow position:
               chr1:8349174-8349454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               211
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               180, 15
               

               Conread position:
               1052-1346
               

               Cow position:
               chr1:75347779-75347475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               34, 85
               

               Conread position:
               1055-1348
               

               Cow position:
               chr1:26688321-26688622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               30, 84
               

               Conread position:
               1057-1219
               

               Cow position:
               chr1:64706637-64706479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               1057-1230
               

               Cow position:
               chr1:74081833-74082009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1057-1314
               

               Cow position:
               chr1:81582263-81582008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               35, 51
               

               Conread position:
               1057-1316
               

               Cow position:
               chr1:52052566-52052835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               1057-1334
               

               Cow position:
               chr1:9534311-9534038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               208
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               27, 86
               

               Conread position:
               1057-1337
               

               Cow position:
               chr1:72732190-72731902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               33, 241
               

               Conread position:
               1057-1338
               

               Cow position:
               chr1:77720092-77720372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               36, 129
               

               Conread position:
               1057-1346
               

               Cow position:
               chr1:23100050-23099754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               57, 30
               

               Conread position:
               1057-1348
               

               Cow position:
               chr1:25383816-25383515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               15, 141
               

               Conread position:
               1057-1348
               

               Cow position:
               chr1:42555413-42555118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 48
               

               Conread position:
               1057-1348
               

               Cow position:
               chr1:63504482-63504191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               33, 94
               

               Conread position:
               1057-1348
               

               Cow position:
               chr1:71136301-71136005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               1057-1348
               

               Cow position:
               chr1:74946969-74947270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               1057-1348
               

               Cow position:
               chr1:74955864-74956169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               224
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               39, 123
               

               Conread position:
               1057-1348
               

               Cow position:
               chr1:75383131-75382848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               39, 120
               

               Conread position:
               1057-1348
               

               Cow position:
               chr1:93110464-93110769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               1057-1348
               

               Cow position:
               chr1:95177086-95176792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               1057-1349
               

               Cow position:
               chr1:6304709-6305013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1057-1349
               

               Cow position:
               chr1:31807030-31806729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               39, 77
               

               Conread position:
               1057-1365
               

               Cow position:
               chr1:71045903-71045590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               1057-1365
               

               Cow position:
               chr1:75933413-75933108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 111
               

               Conread position:
               1060-1294
               

               Cow position:
               chr1:82880796-82880552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               37, 112
               

               Conread position:
               1060-1340
               

               Cow position:
               chr1:30047461-30047733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               205
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               188, 37
               

               Conread position:
               1060-1348
               

               Cow position:
               chr1:40600191-40599896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               1060-1348
               

               Cow position:
               chr1:89443333-89443624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               26, 76
               

               Conread position:
               1060-1360
               

               Cow position:
               chr1:82378937-82378630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               30, 83
               

               Conread position:
               1060-1373
               

               Cow position:
               chr1:68845341-68845657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               237
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               33, 115
               

               Conread position:
               1062-1348
               

               Cow position:
               chr1:66430438-66430153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               210
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               26, 119
               

               Conread position:
               1062-1349
               

               Cow position:
               chr1:4414064-4414356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               32, 106
               

               Conread position:
               1063-1348
               

               Cow position:
               chr1:92963539-92963251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               218
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               51, 116
               

               Conread position:
               1065-1346
               

               Cow position:
               chr1:19481939-19482220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               51, 164
               

               Conread position:
               1066-1346
               

               Cow position:
               chr1:102647147-102647418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 50
               

               Conread position:
               1066-1348
               

               Cow position:
               chr1:100450030-100450332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               28, 78
               

               Conread position:
               1069-1348
               

               Cow position:
               chr1:81868596-81868873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 18
               

               Conread position:
               1070-1348
               

               Cow position:
               chr1:64678832-64678554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               26, 206
               

               Conread position:
               1072-1340
               

               Cow position:
               chr1:63530690-63530434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               35, 154
               

               Conread position:
               1074-1340
               

               Cow position:
               chr1:24876390-24876126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               54, 23
               

               Conread position:
               1075-1312
               

               Cow position:
               chr1:61542790-61543029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               29, 90
               

               Conread position:
               1075-1339
               

               Cow position:
               chr1:19466180-19465919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               231, 31
               

               Conread position:
               1075-1348
               

               Cow position:
               chr1:70380014-70380293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               29, 166
               

               Conread position:
               1077-1346
               

               Cow position:
               chr1:26178686-26178956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               50, 17
               

               Conread position:
               1079-1226
               

               Cow position:
               chr1:71915997-71916142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               1079-1346
               

               Cow position:
               chr1:14308909-14309183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               48, 36
               

               Conread position:
               1079-1348
               

               Cow position:
               chr1:99512141-99512400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               227, 172
               

               Conread position:
               1080-1348
               

               Cow position:
               chr1:25281535-25281823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               145, 13
               

               Conread position:
               1086-1327
               

               Cow position:
               chr1:100324631-100324869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               10, 40
               

               Conread position:
               1087-1348
               

               Cow position:
               chr1:1991306-1991568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               80, 38
               

               Conread position:
               1087-1348
               

               Cow position:
               chr1:37706860-37707112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               17, 69
               

               Conread position:
               1089-1339
               

               Cow position:
               chr1:8128854-8129105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               104, 81
               

               Conread position:
               1089-1346
               

               Cow position:
               chr1:73196114-73196376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               11, 222
               

               Conread position:
               1089-1348
               

               Cow position:
               chr1:70435112-70434856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               191
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               131, 94
               

               Conread position:
               1090-1250
               

               Cow position:
               chr1:84203625-84203464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               37, 28
               

               Conread position:
               1090-1346
               

               Cow position:
               chr1:77133866-77133614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               1090-1347
               

               Cow position:
               chr1:75142109-75141856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 7
               

               Conread position:
               1090-1348
               

               Cow position:
               chr1:24777880-24778132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               9, 43
               

               Conread position:
               1090-1348
               

               Cow position:
               chr1:65318688-65318428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 162
               

               Conread position:
               1090-1348
               

               Cow position:
               chr1:71253442-71253700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               7, 74
               

               Conread position:
               1090-1348
               

               Cow position:
               chr1:81613503-81613242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               1090-1348
               

               Cow position:
               chr1:93499734-93499479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               93, 123
               

               Conread position:
               1090-1368
               

               Cow position:
               chr1:39224812-39225088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               9, 218
               

               Conread position:
               1091-1340
               

               Cow position:
               chr1:51394530-51394282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               142, 184
               

               Conread position:
               1093-1346
               

               Cow position:
               chr1:20950825-20950576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               21, 105
               

               Conread position:
               1093-1348
               

               Cow position:
               chr1:28678633-28678382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               18, 39
               

               Conread position:
               1093-1348
               

               Cow position:
               chr1:41115608-41115862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               195
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               11, 72
               

               Conread position:
               1093-1349
               

               Cow position:
               chr1:26702096-26702356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 71
               

               Conread position:
               1094-1270
               

               Cow position:
               chr1:78067960-78068133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               1094-1281
               

               Cow position:
               chr1:77892244-77892063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               128, 64
               

               Conread position:
               1094-1290
               

               Cow position:
               chr1:100474344-100474143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               1094-1306
               

               Cow position:
               chr1:46031069-46030855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               33, 38
               

               Conread position:
               1094-1322
               

               Cow position:
               chr1:50964021-50964250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               136, 184
               

               Conread position:
               1094-1325
               

               Cow position:
               chr1:3789960-3790190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               211, 66
               

               Conread position:
               1094-1326
               

               Cow position:
               chr1:38277919-38278163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               33, 40
               

               Conread position:
               1094-1337
               

               Cow position:
               chr1:21954114-21954365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               33, 38
               

               Conread position:
               1094-1339
               

               Cow position:
               chr1:48581238-48580992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               212, 138
               

               Conread position:
               1094-1340
               

               Cow position:
               chr1:45555475-45555225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               1094-1340
               

               Cow position:
               chr1:94226445-94226690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               10, 39
               

               Conread position:
               1094-1342
               

               Cow position:
               chr1:20732814-20732562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               149, 63
               

               Conread position:
               1094-1344
               

               Cow position:
               chr1:71119629-71119369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               200
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               117, 24
               

               Conread position:
               1094-1346
               

               Cow position:
               chr1:6941577-6941320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 139
               

               Conread position:
               1094-1346
               

               Cow position:
               chr1:6958990-6958733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 139
               

               Conread position:
               1094-1346
               

               Cow position:
               chr1:80988455-80988201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               1094-1347
               

               Cow position:
               chr1:21131005-21131240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               213, 84
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:13414134-13413883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               10, 64
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:18936728-18936977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               139, 75
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:20667633-20667889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:28177113-28176856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 63
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:38754032-38753770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               33, 38
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:42175837-42175577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               27, 116
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:43388943-43389195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               144, 69
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:51445995-51445732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               133, 93
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:54258676-54258416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               199
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               9, 42
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:59519024-59518773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               197
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               135, 62
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:63434697-63434953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 226
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:65909620-65909379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 93
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:68618823-68619081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               193
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               83, 16
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:68763579-68763829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 70
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:80336140-80336390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               155, 130
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:87072805-87072557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               130, 81
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:101822405-101822651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               213, 39
               

               Conread position:
               1094-1348
               

               Cow position:
               chr1:101866388-101866644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               135, 98
               

               Conread position:
               1094-1349
               

               Cow position:
               chr1:73545802-73546051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               212, 111
               

               Conread position:
               1094-1365
               

               Cow position:
               chr1:19144818-19145086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               20, 12
               

               Conread position:
               1094-1366
               

               Cow position:
               chr1:81228225-81228505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               33, 12
               

               Conread position:
               1094-1372
               

               Cow position:
               chr1:68253705-68253421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               28, 12
               

               Conread position:
               1094-1375
               

               Cow position:
               chr1:5580165-5579881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               133, 70
               

               Conread position:
               1095-1339
               

               Cow position:
               chr1:62291593-62291829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               212, 68
               

               Conread position:
               1095-1348
               

               Cow position:
               chr1:73761242-73761503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               31, 113
               

               Conread position:
               1096-1304
               

               Cow position:
               chr1:86061884-86062088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               31, 70
               

               Conread position:
               1096-1340
               

               Cow position:
               chr1:1878127-1877889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               133, 90
               

               Conread position:
               1097-1223
               

               Cow position:
               chr1:3914813-3914938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               1097-1223
               

               Cow position:
               chr1:54157402-54157274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               1097-1224
               

               Cow position:
               chr1:69940717-69940843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1097-1230
               

               Cow position:
               chr1:97144360-97144491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               50, 67
               

               Conread position:
               1097-1235
               

               Cow position:
               chr1:67529161-67529024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               1097-1238
               

               Cow position:
               chr1:95835692-95835834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               1097-1255
               

               Cow position:
               chr1:69481842-69482005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1097-1256
               

               Cow position:
               chr1:84768773-84768934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               1097-1258
               

               Cow position:
               chr1:31357404-31357568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               130, 21
               

               Conread position:
               1097-1265
               

               Cow position:
               chr1:8624344-8624513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               131, 12
               

               Conread position:
               1097-1267
               

               Cow position:
               chr1:43311925-43312094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               132, 151
               

               Conread position:
               1097-1267
               

               Cow position:
               chr1:102648384-102648216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1097-1270
               

               Cow position:
               chr1:19515513-19515683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               1097-1273
               

               Cow position:
               chr1:30983390-30983562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               14, 67
               

               Conread position:
               1097-1278
               

               Cow position:
               chr1:68672496-68672676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               128, 68
               

               Conread position:
               1097-1285
               

               Cow position:
               chr1:8347229-8347040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               1097-1285
               

               Cow position:
               chr1:95153328-95153136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               130, 93
               

               Conread position:
               1097-1287
               

               Cow position:
               chr1:45223687-45223492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1097-1288
               

               Cow position:
               chr1:98576153-98575961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               111, 175
               

               Conread position:
               1097-1292
               

               Cow position:
               chr1:50992039-50991844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               139, 155
               

               Conread position:
               1097-1292
               

               Cow position:
               chr1:58037124-58036926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               131, 60
               

               Conread position:
               1097-1298
               

               Cow position:
               chr1:45670738-45670542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               127, 66
               

               Conread position:
               1097-1300
               

               Cow position:
               chr1:65103721-65103521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               137, 30
               

               Conread position:
               1097-1301
               

               Cow position:
               chr1:1499587-1499790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               159, 0
               

               Conread position:
               1097-1301
               

               Cow position:
               chr1:49082849-49082641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1304
               

               Cow position:
               chr1:71350621-71350825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               132, 170
               

               Conread position:
               1097-1307
               

               Cow position:
               chr1:19226951-19227161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               142, 156
               

               Conread position:
               1097-1309
               

               Cow position:
               chr1:37726313-37726522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               7, 147
               

               Conread position:
               1097-1309
               

               Cow position:
               chr1:48769908-48769694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               193, 0
               

               Conread position:
               1097-1309
               

               Cow position:
               chr1:67919241-67919039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               210, 128
               

               Conread position:
               1097-1311
               

               Cow position:
               chr1:30189258-30189038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               78, 213
               

               Conread position:
               1097-1312
               

               Cow position:
               chr1:30417942-30418148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               1097-1312
               

               Cow position:
               chr1:32001215-32001431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               130, 66
               

               Conread position:
               1097-1312
               

               Cow position:
               chr1:69694887-69695102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               169
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               84, 100
               

               Conread position:
               1097-1312
               

               Cow position:
               chr1:80422378-80422170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               1097-1312
               

               Cow position:
               chr1:89835357-89835138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               131, 44
               

               Conread position:
               1097-1312
               

               Cow position:
               chr1:98512032-98511818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               162
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               1097-1312
               

               Cow position:
               chr1:98594671-98594468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               132, 86
               

               Conread position:
               1097-1313
               

               Cow position:
               chr1:628072-627850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1313
               

               Cow position:
               chr1:7023227-7023008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               128, 165
               

               Conread position:
               1097-1313
               

               Cow position:
               chr1:43855401-43855190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               137, 63
               

               Conread position:
               1097-1313
               

               Cow position:
               chr1:56225891-56225681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               155, 122
               

               Conread position:
               1097-1316
               

               Cow position:
               chr1:42482303-42482087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               128, 27
               

               Conread position:
               1097-1317
               

               Cow position:
               chr1:6826193-6826405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               210, 61
               

               Conread position:
               1097-1318
               

               Cow position:
               chr1:66898391-66898615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               23, 122
               

               Conread position:
               1097-1322
               

               Cow position:
               chr1:78697666-78697893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               131, 103
               

               Conread position:
               1097-1325
               

               Cow position:
               chr1:7443082-7442858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               210, 90
               

               Conread position:
               1097-1325
               

               Cow position:
               chr1:26615968-26616195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               90, 147
               

               Conread position:
               1097-1325
               

               Cow position:
               chr1:42868834-42869060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               133, 71
               

               Conread position:
               1097-1325
               

               Cow position:
               chr1:72105512-72105289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               132, 79
               

               Conread position:
               1097-1325
               

               Cow position:
               chr1:84103955-84104178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               179, 127
               

               Conread position:
               1097-1325
               

               Cow position:
               chr1:100569262-100569027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               30, 36
               

               Conread position:
               1097-1326
               

               Cow position:
               chr1:3607910-3607685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               110, 90
               

               Conread position:
               1097-1327
               

               Cow position:
               chr1:92434106-92433874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               23, 9
               

               Conread position:
               1097-1328
               

               Cow position:
               chr1:72813722-72813485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               132, 114
               

               Conread position:
               1097-1330
               

               Cow position:
               chr1:93810535-93810300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               130, 123
               

               Conread position:
               1097-1334
               

               Cow position:
               chr1:89350071-89349829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               182
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               1097-1335
               

               Cow position:
               chr1:100706233-100705995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               7, 80
               

               Conread position:
               1097-1336
               

               Cow position:
               chr1:49433158-49433397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               210, 122
               

               Conread position:
               1097-1336
               

               Cow position:
               chr1:64302137-64302383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               50, 70
               

               Conread position:
               1097-1337
               

               Cow position:
               chr1:196899-197140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               123, 178
               

               Conread position:
               1097-1337
               

               Cow position:
               chr1:18780223-18780470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               71, 159
               

               Conread position:
               1097-1337
               

               Cow position:
               chr1:47658451-47658212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               217, 155
               

               Conread position:
               1097-1338
               

               Cow position:
               chr1:12978788-12978543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               1097-1338
               

               Cow position:
               chr1:64572621-64572376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               1097-1338
               

               Cow position:
               chr1:88913425-88913181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               122, 51
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:10778669-10778428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               210, 143
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:24132957-24133196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               144, 66
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:24406791-24407025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:34300445-34300687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               208, 231
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:43311665-43311913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               27, 167
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:47886374-47886627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               190
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               90, 83
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:69264914-69264677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               132, 86
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:77880628-77880874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               127, 67
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:85549972-85550216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:89509815-89510060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               119, 158
               

               Conread position:
               1097-1339
               

               Cow position:
               chr1:97232066-97231819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               122, 144
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:8721-8482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               210, 174
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:10941989-10942234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               129, 34
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:10964396-10964152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               129, 13
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:21460978-21460725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               129, 63
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:22730840-22730616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:42545674-42545926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 9
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:53623061-53622820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               132, 16
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:56225575-56225327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:56229344-56229112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               30, 37
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:64250947-64251191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               96, 13
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:72068728-72068978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:78809982-78809741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 126
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:89449006-89448758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:92996785-92997038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               122, 159
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:94261642-94261403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               209, 104
               

               Conread position:
               1097-1340
               

               Cow position:
               chr1:97939063-97938827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               191
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               210, 78
               

               Conread position:
               1097-1343
               

               Cow position:
               chr1:48105330-48105576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               129, 47
               

               Conread position:
               1097-1344
               

               Cow position:
               chr1:41047197-41047444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               123, 13
               

               Conread position:
               1097-1344
               

               Cow position:
               chr1:78838901-78838656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               138, 78
               

               Conread position:
               1097-1344
               

               Cow position:
               chr1:89741889-89742139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               54, 128
               

               Conread position:
               1097-1344
               

               Cow position:
               chr1:97779097-97778855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1345
               

               Cow position:
               chr1:17196521-17196773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               71, 80
               

               Conread position:
               1097-1345
               

               Cow position:
               chr1:24534151-24534398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 66
               

               Conread position:
               1097-1345
               

               Cow position:
               chr1:34159942-34159690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 154
               

               Conread position:
               1097-1345
               

               Cow position:
               chr1:49796098-49795863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               1097-1345
               

               Cow position:
               chr1:68826806-68827050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               130, 60
               

               Conread position:
               1097-1345
               

               Cow position:
               chr1:87095108-87095375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:11913772-11914023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               30, 39
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:15333997-15333736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               120, 82
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:22192875-22192618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               191
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:45019694-45019952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               17, 207
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:54156629-54156883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 60
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:60281479-60281225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:68676465-68676227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               130, 94
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:68863137-68862888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               129, 64
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:72011707-72011955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               210, 131
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:84811833-84812078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               127, 180
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:89341874-89342140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:91874811-91875053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               131, 47
               

               Conread position:
               1097-1346
               

               Cow position:
               chr1:93528807-93528549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 83
               

               Conread position:
               1097-1347
               

               Cow position:
               chr1:39068850-39069101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 152
               

               Conread position:
               1097-1347
               

               Cow position:
               chr1:47233372-47233625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               1097-1347
               

               Cow position:
               chr1:53458801-53458550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               123, 66
               

               Conread position:
               1097-1347
               

               Cow position:
               chr1:80900225-80899965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               127, 25
               

               Conread position:
               1097-1347
               

               Cow position:
               chr1:83748048-83747798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               128, 62
               

               Conread position:
               1097-1347
               

               Cow position:
               chr1:98360298-98360551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               128, 52
               

               Conread position:
               1097-1347
               

               Cow position:
               chr1:101788987-101789218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               210, 72
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:874760-874499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:1956229-1956475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               132, 28
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:3962581-3962839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               87, 150
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:7350654-7350395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               134, 155
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:13637557-13637820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:21787442-21787183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:22525984-22525732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               122, 193
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:23512554-23512802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 21
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:24581682-24581436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               211, 85
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:25734973-25734711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               145, 60
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:29935281-29935525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               137, 85
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:33330988-33331232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               139, 59
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:36998291-36998045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               193
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               210, 102
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:37309413-37309658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 158
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:37321896-37322149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               119, 60
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:38401905-38401647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               51, 69
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:39509952-39510197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               210, 118
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:41056784-41056536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               119, 147
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:41252304-41252545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               94, 72
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:41697161-41696911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               120, 66
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:42873844-42874094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               96, 170
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:50930873-50931123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               123, 65
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:52487875-52488110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               210, 18
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:52995132-52994880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               24, 193
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:53495567-53495320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               27, 47
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:54206710-54206966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               128, 67
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:54478435-54478177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               193
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:55428850-55429103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               194
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               88, 173
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:61741862-61742115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               55, 68
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:62964372-62964131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               210, 114
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:68817693-68817946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               78, 66
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:69539797-69539550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               210, 123
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:70312685-70312952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               67, 170
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:70538717-70538460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:72285962-72286201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               208, 128
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:73960806-73960558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               208, 37
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:76613029-76613279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               130, 157
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:77683458-77683210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 122
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:78811144-78810892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               131, 104
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:78857223-78857468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               208, 137
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:81290612-81290367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               143, 60
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:81355597-81355851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               75, 205
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:82337674-82337928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               193
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               132, 72
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:84255873-84255611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:86579068-86578803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               123, 66
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:87197926-87197680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               210, 127
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:88618702-88618450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               126, 172
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:88652742-88652483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               74, 60
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:89381381-89381127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               114, 153
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:91023361-91023615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               132, 86
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:91066046-91066300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               127, 51
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:91811883-91811640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               127, 73
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:95057151-95056908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               54, 69
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:95215084-95215329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               209, 123
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:97696850-97696593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               195
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               123, 66
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:98413878-98413619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               142, 178
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:98461392-98461147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               130, 155
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:99642263-99642513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 99
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:100741384-100741140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               131, 78
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:100800459-100800212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               80, 147
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:101632231-101632486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr1:102266162-102266420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               131, 167
               

               Conread position:
               1097-1349
               

               Cow position:
               chr1:1981007-1981262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               127, 198
               

               Conread position:
               1097-1349
               

               Cow position:
               chr1:9013640-9013380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               132, 21
               

               Conread position:
               1097-1349
               

               Cow position:
               chr1:23186693-23186945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1349
               

               Cow position:
               chr1:34856522-34856784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               127, 250
               

               Conread position:
               1097-1349
               

               Cow position:
               chr1:36932260-36932009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               138, 88
               

               Conread position:
               1097-1349
               

               Cow position:
               chr1:43505635-43505376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               1097-1349
               

               Cow position:
               chr1:99609474-99609220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 62
               

               Conread position:
               1097-1349
               

               Cow position:
               chr1:100552081-100551820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1097-1354
               

               Cow position:
               chr1:43822505-43822249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               131, 63
               

               Conread position:
               1097-1359
               

               Cow position:
               chr1:96081585-96081326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               132, 32
               

               Conread position:
               1097-1360
               

               Cow position:
               chr1:96472536-96472285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               210, 59
               

               Conread position:
               1097-1361
               

               Cow position:
               chr1:56477698-56477432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 213
               

               Conread position:
               1097-1362
               

               Cow position:
               chr1:48730726-48730986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 91
               

               Conread position:
               1097-1364
               

               Cow position:
               chr1:89485686-89485413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               80, 245
               

               Conread position:
               1097-1365
               

               Cow position:
               chr1:11729281-11729017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               210, 124
               

               Conread position:
               1097-1365
               

               Cow position:
               chr1:35162516-35162243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               1097-1365
               

               Cow position:
               chr1:43352550-43352821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               132, 77
               

               Conread position:
               1097-1365
               

               Cow position:
               chr1:49839590-49839343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               1097-1365
               

               Cow position:
               chr1:52039742-52039472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               125, 60
               

               Conread position:
               1097-1365
               

               Cow position:
               chr1:52435378-52435106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               134, 177
               

               Conread position:
               1097-1365
               

               Cow position:
               chr1:55230082-55229820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               209, 127
               

               Conread position:
               1097-1365
               

               Cow position:
               chr1:67305136-67305405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               71, 9
               

               Conread position:
               1097-1365
               

               Cow position:
               chr1:75744968-75744696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               1097-1366
               

               Cow position:
               chr1:4291270-4290993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               208
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               81, 66
               

               Conread position:
               1097-1366
               

               Cow position:
               chr1:43872214-43872496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 51
               

               Conread position:
               1097-1366
               

               Cow position:
               chr1:53370189-53369913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               127, 78
               

               Conread position:
               1097-1369
               

               Cow position:
               chr1:4032738-4032457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1097-1369
               

               Cow position:
               chr1:7971518-7971253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               203
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               90, 123
               

               Conread position:
               1097-1370
               

               Cow position:
               chr1:3923694-3923964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 122
               

               Conread position:
               1097-1372
               

               Cow position:
               chr1:15547576-15547298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               205
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               129, 62
               

               Conread position:
               1097-1372
               

               Cow position:
               chr1:53521021-53520736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               209
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               23, 278
               

               Conread position:
               1097-1374
               

               Cow position:
               chr1:53308288-53308560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               210, 21
               

               Conread position:
               1097-1375
               

               Cow position:
               chr1:81580283-81579995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               123, 60
               

               Conread position:
               1098-1263
               

               Cow position:
               chr1:88359983-88359819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               1098-1303
               

               Cow position:
               chr1:65028639-65028428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               1098-1311
               

               Cow position:
               chr1:635580-635795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               1098-1338
               

               Cow position:
               chr1:4243228-4243480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               1098-1339
               

               Cow position:
               chr1:100421925-100421697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               1098-1340
               

               Cow position:
               chr1:484362-484608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               129, 140
               

               Conread position:
               1098-1340
               

               Cow position:
               chr1:31934612-31934372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               209, 126
               

               Conread position:
               1098-1343
               

               Cow position:
               chr1:76436585-76436349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1098-1344
               

               Cow position:
               chr1:79660296-79660541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               7, 142
               

               Conread position:
               1098-1346
               

               Cow position:
               chr1:31348332-31348586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               110, 147
               

               Conread position:
               1098-1347
               

               Cow position:
               chr1:98551825-98551570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               1098-1348
               

               Cow position:
               chr1:16961905-16962157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               126, 135
               

               Conread position:
               1098-1348
               

               Cow position:
               chr1:45288766-45289019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 227
               

               Conread position:
               1098-1348
               

               Cow position:
               chr1:82936492-82936733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               209, 121
               

               Conread position:
               1098-1348
               

               Cow position:
               chr1:95499391-95499639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               205, 116
               

               Conread position:
               1098-1348
               

               Cow position:
               chr1:95558142-95557889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               130, 191
               

               Conread position:
               1098-1349
               

               Cow position:
               chr1:3882354-3882613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               1098-1349
               

               Cow position:
               chr1:6102798-6103061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               1098-1349
               

               Cow position:
               chr1:21955268-21955521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               122, 101
               

               Conread position:
               1098-1349
               

               Cow position:
               chr1:51770197-51769939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               80, 120
               

               Conread position:
               1098-1349
               

               Cow position:
               chr1:96964421-96964172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               208, 73
               

               Conread position:
               1098-1357
               

               Cow position:
               chr1:74084086-74084353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               62, 72
               

               Conread position:
               1098-1365
               

               Cow position:
               chr1:72034819-72035090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 107
               

               Conread position:
               1098-1379
               

               Cow position:
               chr1:10063876-10064155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               140, 55
               

               Conread position:
               1098-1383
               

               Cow position:
               chr1:101267899-101268189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               211
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               127, 66
               

               Conread position:
               1099-1300
               

               Cow position:
               chr1:6972630-6972431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               1099-1309
               

               Cow position:
               chr1:38419127-38418926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               28, 33
               

               Conread position:
               1099-1339
               

               Cow position:
               chr1:56635202-56634959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               136, 109
               

               Conread position:
               1099-1346
               

               Cow position:
               chr1:31272338-31272586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 152
               

               Conread position:
               1099-1348
               

               Cow position:
               chr1:66355611-66355860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               133, 34
               

               Conread position:
               1099-1348
               

               Cow position:
               chr1:81563849-81563589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1099-1349
               

               Cow position:
               chr1:51417875-51417628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               129, 86
               

               Conread position:
               1099-1365
               

               Cow position:
               chr1:8287527-8287778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               212, 10
               

               Conread position:
               1099-1365
               

               Cow position:
               chr1:58825645-58825384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               103, 69
               

               Conread position:
               1100-1339
               

               Cow position:
               chr1:21836034-21835807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               206, 64
               

               Conread position:
               1101-1339
               

               Cow position:
               chr1:101867452-101867214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               119, 175
               

               Conread position:
               1101-1348
               

               Cow position:
               chr1:43703511-43703260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1103-1298
               

               Cow position:
               chr1:46783412-46783223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               126, 60
               

               Conread position:
               1103-1303
               

               Cow position:
               chr1:42541698-42541495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               1103-1312
               

               Cow position:
               chr1:3352600-3352804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               127, 79
               

               Conread position:
               1103-1312
               

               Cow position:
               chr1:40482313-40482513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               124, 15
               

               Conread position:
               1103-1339
               

               Cow position:
               chr1:39426905-39427131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               1103-1346
               

               Cow position:
               chr1:55357195-55357431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               203, 66
               

               Conread position:
               1103-1348
               

               Cow position:
               chr1:3138014-3137780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               204, 60
               

               Conread position:
               1103-1348
               

               Cow position:
               chr1:19885481-19885241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               123, 60
               

               Conread position:
               1103-1348
               

               Cow position:
               chr1:27145553-27145797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               144, 40
               

               Conread position:
               1103-1348
               

               Cow position:
               chr1:34771403-34771652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 155
               

               Conread position:
               1104-1334
               

               Cow position:
               chr1:87888484-87888263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               123, 65
               

               Conread position:
               1104-1348
               

               Cow position:
               chr1:33206781-33207018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               192
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               56, 87
               

               Conread position:
               1104-1348
               

               Cow position:
               chr1:90641127-90640881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               191
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               116, 43
               

               Conread position:
               1104-1350
               

               Cow position:
               chr1:29657918-29657678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               187, 9
               

               Conread position:
               1109-1372
               

               Cow position:
               chr1:69540376-69540128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               198, 43
               

               Conread position:
               1110-1263
               

               Cow position:
               chr1:101507453-101507296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               1110-1293
               

               Cow position:
               chr1:82942374-82942195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               1110-1293
               

               Cow position:
               chr1:82944184-82944363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               1110-1332
               

               Cow position:
               chr1:78079812-78079596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               196, 177
               

               Conread position:
               1110-1337
               

               Cow position:
               chr1:53425270-53425038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1110-1339
               

               Cow position:
               chr1:48444101-48444332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               1110-1340
               

               Cow position:
               chr1:51531844-51531626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               197, 59
               

               Conread position:
               1110-1344
               

               Cow position:
               chr1:100817636-100817409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               221, 53
               

               Conread position:
               1110-1345
               

               Cow position:
               chr1:81568935-81569175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               104, 141
               

               Conread position:
               1110-1346
               

               Cow position:
               chr1:16855606-16855836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               197, 115
               

               Conread position:
               1110-1346
               

               Cow position:
               chr1:20205120-20204882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               116, 53
               

               Conread position:
               1110-1348
               

               Cow position:
               chr1:28563476-28563716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               110, 53
               

               Conread position:
               1110-1348
               

               Cow position:
               chr1:31390495-31390736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               48, 229
               

               Conread position:
               1110-1348
               

               Cow position:
               chr1:55146891-55146658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1110-1348
               

               Cow position:
               chr1:93554929-93554696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 73
               

               Conread position:
               1110-1349
               

               Cow position:
               chr1:102349657-102349902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               114, 53
               

               Conread position:
               1110-1365
               

               Cow position:
               chr1:22729149-22728887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               1110-1416
               

               Cow position:
               chr1:90868348-90868651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 208
               

               Conread position:
               1111-1348
               

               Cow position:
               chr1:26201324-26201073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               1113-1308
               

               Cow position:
               chr1:33996834-33997024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               1113-1311
               

               Cow position:
               chr1:30504591-30504389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               1113-1315
               

               Cow position:
               chr1:22943938-22944139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               122, 50
               

               Conread position:
               1113-1328
               

               Cow position:
               chr1:89785999-89785783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               93, 51
               

               Conread position:
               1113-1336
               

               Cow position:
               chr1:86073686-86073459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               115, 141
               

               Conread position:
               1113-1338
               

               Cow position:
               chr1:2075261-2075477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               194, 75
               

               Conread position:
               1113-1339
               

               Cow position:
               chr1:90975998-90976225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 111
               

               Conread position:
               1113-1342
               

               Cow position:
               chr1:95179044-95178811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               14, 19
               

               Conread position:
               1113-1347
               

               Cow position:
               chr1:64804012-64804250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               114, 144
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:7748303-7748070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               193, 107
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:7752469-7752236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               193, 107
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:11226158-11226389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               115, 15
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:21577899-21577657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               14, 19
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:29916504-29916259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:29975510-29975747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               112, 20
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:34686270-34686047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               116, 59
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:40192610-40192830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:94212317-94212086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               193, 44
               

               Conread position:
               1113-1348
               

               Cow position:
               chr1:99807626-99807871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               1113-1365
               

               Cow position:
               chr1:13547887-13548150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               50, 134
               

               Conread position:
               1113-1365
               

               Cow position:
               chr1:44507063-44506803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               1113-1365
               

               Cow position:
               chr1:90422993-90423246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               111, 20
               

               Conread position:
               1113-1365
               

               Cow position:
               chr1:97611570-97611817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               109, 143
               

               Conread position:
               1113-1394
               

               Cow position:
               chr1:92642359-92642638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               174, 20
               

               Conread position:
               1113-1416
               

               Cow position:
               chr1:62732662-62732360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               194, 20
               

               Conread position:
               1113-1429
               

               Cow position:
               chr1:70026255-70026570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               222
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               64, 124
               

               Conread position:
               1114-1334
               

               Cow position:
               chr1:101946625-101946843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               168
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               193, 110
               

               Conread position:
               1114-1339
               

               Cow position:
               chr1:85597027-85596800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               113, 68
               

               Conread position:
               1114-1348
               

               Cow position:
               chr1:6794837-6795077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               100, 19
               

               Conread position:
               1114-1348
               

               Cow position:
               chr1:101634801-101634557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               106, 89
               

               Conread position:
               1115-1346
               

               Cow position:
               chr1:96478788-96478547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               12, 17
               

               Conread position:
               1115-1348
               

               Cow position:
               chr1:49317408-49317644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               1115-1360
               

               Cow position:
               chr1:11771998-11772236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               192, 16
               

               Conread position:
               1117-1285
               

               Cow position:
               chr1:15028839-15028666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               1117-1346
               

               Cow position:
               chr1:98311158-98310920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               1117-1348
               

               Cow position:
               chr1:29626826-29627058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               105, 226
               

               Conread position:
               1118-1303
               

               Cow position:
               chr1:98583838-98583662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               57, 86
               

               Conread position:
               1118-1312
               

               Cow position:
               chr1:87936983-87936789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               151
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1118-1339
               

               Cow position:
               chr1:57297567-57297335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1118-1343
               

               Cow position:
               chr1:50045885-50045657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               118, 15
               

               Conread position:
               1118-1346
               

               Cow position:
               chr1:63390682-63390919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               1118-1348
               

               Cow position:
               chr1:6788198-6788433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1118-1348
               

               Cow position:
               chr1:15691419-15691190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               94, 20
               

               Conread position:
               1119-1310
               

               Cow position:
               chr1:71399370-71399177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               8, 15
               

               Conread position:
               1119-1323
               

               Cow position:
               chr1:20104350-20104146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               186, 127
               

               Conread position:
               1119-1325
               

               Cow position:
               chr1:5539192-5539401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1326
               

               Cow position:
               chr1:71665848-71666067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               101, 135
               

               Conread position:
               1119-1334
               

               Cow position:
               chr1:86279497-86279278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               90, 97
               

               Conread position:
               1119-1340
               

               Cow position:
               chr1:69127082-69127305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               9, 14
               

               Conread position:
               1119-1344
               

               Cow position:
               chr1:92370285-92370501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:1185813-1185595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:7186872-7186647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               84, 99
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:12425082-12424868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               33, 95
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:49077247-49077488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:51981306-51981086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               8, 15
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:52753076-52753311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:63595970-63596201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:71747936-71748152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               188, 56
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:73682158-73682378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:83982296-83982518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               188, 101
               

               Conread position:
               1119-1346
               

               Cow position:
               chr1:85361935-85361714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               186, 92
               

               Conread position:
               1119-1348
               

               Cow position:
               chr1:3323955-3323714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               27, 159
               

               Conread position:
               1119-1348
               

               Cow position:
               chr1:6166324-6166094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               110, 60
               

               Conread position:
               1119-1348
               

               Cow position:
               chr1:55705166-55705397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               107, 9
               

               Conread position:
               1119-1348
               

               Cow position:
               chr1:71228176-71227933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               103, 41
               

               Conread position:
               1119-1348
               

               Cow position:
               chr1:86113316-86113558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               104, 88
               

               Conread position:
               1119-1348
               

               Cow position:
               chr1:86682476-86682710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               104, 130
               

               Conread position:
               1119-1349
               

               Cow position:
               chr1:11832695-11832912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1365
               

               Cow position:
               chr1:13810731-13810488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1120-1273
               

               Cow position:
               chr1:92684611-92684763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               73, 106
               

               Conread position:
               1120-1313
               

               Cow position:
               chr1:78794148-78794337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               187, 103
               

               Conread position:
               1120-1332
               

               Cow position:
               chr1:79640205-79640421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               1120-1335
               

               Cow position:
               chr1:5023679-5023890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               102, 153
               

               Conread position:
               1120-1347
               

               Cow position:
               chr1:67821140-67821356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               30, 98
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:39418028-39418269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               186
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:46030278-46030504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               184, 100
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:61005480-61005709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               170, 28
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:68951708-68951480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               175
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               111, 27
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:72141658-72141413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               100, 66
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:79165000-79165233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 40
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:83072524-83072296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               107, 157
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:83582850-83583081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               100, 146
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:85647697-85647929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:87212016-87211798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               1120-1348
               

               Cow position:
               chr1:91800517-91800749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               100, 35
               

               Conread position:
               1120-1349
               

               Cow position:
               chr1:20384540-20384768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               113, 52
               

               Conread position:
               1121-1346
               

               Cow position:
               chr1:16767006-16767226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               1121-1346
               

               Cow position:
               chr1:61884995-61884774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               102, 141
               

               Conread position:
               1121-1348
               

               Cow position:
               chr1:12464582-12464813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               95, 123
               

               Conread position:
               1121-1348
               

               Cow position:
               chr1:20000666-20000898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               175
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               95, 153
               

               Conread position:
               1121-1348
               

               Cow position:
               chr1:31413890-31414106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               107, 80
               

               Conread position:
               1121-1348
               

               Cow position:
               chr1:41181927-41181696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               1121-1348
               

               Cow position:
               chr1:46839685-46839451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               118, 12
               

               Conread position:
               1121-1348
               

               Cow position:
               chr1:86110662-86110878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               184, 29
               

               Conread position:
               1121-1348
               

               Cow position:
               chr1:101551545-101551314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               99, 43
               
UCSC Genome Browser
               Conread position:
               1122-1293
               

               Cow position:
               chr1:72684773-72684605 (view  custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               102, 16
               
UCSC Genome Browser
               
               
               
Conread position: 1122-1302

               
               
               
Cow position: chr1:55819132-55818961 (view  custom track)

               
               
               
Alignm length: 181

               
               
               
Alignm identity: 139

               
               
               
Alignm E-value: 1e-30

               
               
               
Alignm gaps (pig, cow): 41, 0
UCSC Genome Browser
               
               
               
Conread position: 1122-1325

               
               
               
Cow position: chr1:5010755-5010964 (view  custom track)

               
               
               
Alignm length: 213

               
               
               
Alignm identity: 153

               
               
               
Alignm E-value: 7e-25

               
               
               
Alignm gaps (pig, cow): 110, 85

               
               
               Conread position:1122-1347
               
               
               Cow position:chr1:71078879-71079102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1122-1348
               
               
               Cow position:chr1:92369819-92369585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1122-1349
               
               
               Cow position:chr1:94875593-94875823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 216

               
               
               Conread position:1123-1270
               
               
               Cow position:chr1:74832501-74832358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1123-1339
               
               
               Cow position:chr1:90595490-90595693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):184, 52

               
               
               Conread position:1124-1372
               
               
               Cow position:chr1:95296528-95296775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 121

               
               
               Conread position:1126-1349
               
               
               Cow position:chr1:57524741-57524965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):103, 5

               
               
               Conread position:1126-1349
               
               
               Cow position:chr1:85151105-85151330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):103, 5

               
               
               Conread position:1126-1384
               
               
               Cow position:chr1:57420655-57420916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):181, 5

               
               
               Conread position:1127-1376
               
               
               Cow position:chr1:9470322-9470572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):98, 192

               
               
               Conread position:1130-1302
               
               
               Cow position:chr1:82513280-82513456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1130-1339
               
               
               Cow position:chr1:44769036-44769251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):95, 60

               
               
               Conread position:1130-1344
               
               
               Cow position:chr1:57575691-57575902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):175, 90

               
               
               Conread position:1130-1346
               
               
               Cow position:chr1:79591171-79590959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):177, 79

               
               
               Conread position:1130-1346
               
               
               Cow position:chr1:84905990-84906213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 164

               
               
               Conread position:1130-1348
               
               
               Cow position:chr1:51654497-51654263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1130-1348
               
               
               Cow position:chr1:79278374-79278593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:1130-1348
               
               
               Cow position:chr1:81913082-81913295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:1130-1349
               
               
               Cow position:chr1:74822520-74822307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):103, 90

               
               
               Conread position:1131-1285
               
               
               Cow position:chr1:56832703-56832857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):96, 111

               
               
               Conread position:1131-1303
               
               
               Cow position:chr1:3605814-3605979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):152, 92

               
               
               Conread position:1131-1309
               
               
               Cow position:chr1:648397-648216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1131-1310
               
               
               Cow position:chr1:45285735-45285550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 151

               
               
               Conread position:1131-1313
               
               
               Cow position:chr1:42360358-42360171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 136

               
               
               Conread position:1131-1317
               
               
               Cow position:chr1:92989662-92989474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1131-1320
               
               
               Cow position:chr1:47288313-47288120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 72

               
               
               Conread position:1131-1323
               
               
               Cow position:chr1:102519728-102519547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):111, 45

               
               
               Conread position:1131-1325
               
               
               Cow position:chr1:95637904-95637705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):98, 143

               
               
               Conread position:1131-1325
               
               
               Cow position:chr1:101916238-101916046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):175, 86

               
               
               Conread position:1131-1332
               
               
               Cow position:chr1:6294425-6294629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1131-1340
               
               
               Cow position:chr1:31607817-31608036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:1131-1340
               
               
               Cow position:chr1:96365733-96365527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:1131-1341
               
               
               Cow position:chr1:11172443-11172233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:1131-1342
               
               
               Cow position:chr1:19568922-19568711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:1131-1342
               
               
               Cow position:chr1:29451993-29451777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:1131-1344
               
               
               Cow position:chr1:1165671-1165462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):105, 94

               
               
               Conread position:1131-1345
               
               
               Cow position:chr1:71305753-71305547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):176, 100

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:3429437-3429657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 85

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:21508465-21508245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 158

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:29481559-29481772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):147, 96

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:33409553-33409773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:42398119-42398342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:57880712-57880934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:65904926-65905152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:72103922-72103701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:78092109-78091887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1131-1346
               
               
               Cow position:chr1:91816699-91816915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 158

               
               
               Conread position:1131-1347
               
               
               Cow position:chr1:70094412-70094195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:1131-1347
               
               
               Cow position:chr1:84283145-84282929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):99, 78

               
               
               Conread position:1131-1348
               
               
               Cow position:chr1:4027935-4027718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:1131-1348
               
               
               Cow position:chr1:12222535-12222752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):175, 93

               
               
               Conread position:1131-1348
               
               
               Cow position:chr1:22628578-22628786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):175, 53

               
               
               Conread position:1131-1348
               
               
               Cow position:chr1:45007538-45007322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):65, 152

               
               
               Conread position:1131-1348
               
               
               Cow position:chr1:53374505-53374284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):99, 72

               
               
               Conread position:1131-1348
               
               
               Cow position:chr1:89076561-89076780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):175, 88

               
               
               Conread position:1131-1348
               
               
               Cow position:chr1:101701575-101701792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 54

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:4402217-4401995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 117

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:23488434-23488657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:35554987-35554756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:62519435-62519209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):88, 56

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:65025347-65025113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:66138390-66138171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:70344112-70343893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:70422376-70422156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):124, 76

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:71257394-71257627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 211

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:74929639-74929860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 141

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:92532329-92532555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:98453664-98453437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:1131-1349
               
               
               Cow position:chr1:101837114-101836897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):175, 80

               
               
               Conread position:1131-1356
               
               
               Cow position:chr1:6228512-6228741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1131-1362
               
               
               Cow position:chr1:2737272-2737041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:1131-1366
               
               
               Cow position:chr1:4374265-4374504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):98, 118

               
               
               Conread position:1131-1372
               
               
               Cow position:chr1:44075646-44075884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):175, 55

               
               
               Conread position:1132-1346
               
               
               Cow position:chr1:635265-635046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):91, 157

               
               
               Conread position:1132-1346
               
               
               Cow position:chr1:63138912-63138693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1132-1348
               
               
               Cow position:chr1:724811-724591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):97, 197

               
               
               Conread position:1132-1349
               
               
               Cow position:chr1:42256431-42256652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1133-1301
               
               
               Cow position:chr1:75250180-75250013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:1133-1333
               
               
               Cow position:chr1:102756363-102756562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):174, 71

               
               
               Conread position:1133-1344
               
               
               Cow position:chr1:2975924-2976138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:1133-1346
               
               
               Cow position:chr1:43357941-43358160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):98, 31

               
               
               Conread position:1133-1346
               
               
               Cow position:chr1:90864223-90864441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1133-1348
               
               
               Cow position:chr1:21934103-21934323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):70, 180

               
               
               Conread position:1133-1348
               
               
               Cow position:chr1:78791234-78791451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):96, 198

               
               
               Conread position:1133-1348
               
               
               Cow position:chr1:82884322-82884537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 88

               
               
               Conread position:1133-1348
               
               
               Cow position:chr1:95654643-95654859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):89, 144

               
               
               Conread position:1133-1349
               
               
               Cow position:chr1:71643591-71643808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 121

               
               
               Conread position:1135-1322
               
               
               Cow position:chr1:26943376-26943189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):94, 150

               
               
               Conread position:1135-1324
               
               
               Cow position:chr1:47790594-47790787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 168

               
               
               Conread position:1135-1324
               
               
               Cow position:chr1:73458031-73458212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:1135-1348
               
               
               Cow position:chr1:55135904-55135686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:1136-1334
               
               
               Cow position:chr1:53369272-53369072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:1136-1344
               
               
               Cow position:chr1:83410512-83410300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1136-1348
               
               
               Cow position:chr1:76019629-76019838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:1136-1360
               
               
               Cow position:chr1:87440535-87440308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):99, 131

               
               
               Conread position:1137-1340
               
               
               Cow position:chr1:95101020-95100823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):170, 48

               
               
               Conread position:1137-1347
               
               
               Cow position:chr1:7609686-7609468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1139-1273
               
               
               Cow position:chr1:186210-186348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1139-1371
               
               
               Cow position:chr1:25387114-25386881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:1140-1340
               
               
               Cow position:chr1:11873294-11873499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 126

               
               
               Conread position:1140-1348
               
               
               Cow position:chr1:51968525-51968314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:1140-1348
               
               
               Cow position:chr1:54199316-54199531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1140-1348
               
               
               Cow position:chr1:57639452-57639664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 182

               
               
               Conread position:1140-1367
               
               
               Cow position:chr1:8984619-8984854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 116

               
               
               Conread position:1141-1339
               
               
               Cow position:chr1:57395874-57396070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):166, 79

               
               
               Conread position:1141-1340
               
               
               Cow position:chr1:55260373-55260569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:1142-1340
               
               
               Cow position:chr1:26729779-26729585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):83, 133

               
               
               Conread position:1142-1348
               
               
               Cow position:chr1:24445567-24445774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:1144-1348
               
               
               Cow position:chr1:43340558-43340766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):162, 25

               
               
               Conread position:1144-1383
               
               
               Cow position:chr1:93228584-93228344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):163, 227

               
               
               Conread position:1145-1346
               
               
               Cow position:chr1:22745683-22745478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:1145-1348
               
               
               Cow position:chr1:82443397-82443604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:1147-1344
               
               
               Cow position:chr1:61742405-61742604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 70

               
               
               Conread position:1147-1346
               
               
               Cow position:chr1:10655537-10655336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):160, 8

               
               
               Conread position:1147-1346
               
               
               Cow position:chr1:77620602-77620406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 149

               
               
               Conread position:1147-1346
               
               
               Cow position:chr1:83083064-83082857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1147-1348
               
               
               Cow position:chr1:89508605-89508409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):160, 73

               
               
               Conread position:1147-1348
               
               
               Cow position:chr1:99136374-99136578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:1148-1348
               
               
               Cow position:chr1:100770697-100770896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:1149-1347
               
               
               Cow position:chr1:24235465-24235663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 97

               
               
               Conread position:1149-1348
               
               
               Cow position:chr1:76470707-76470505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:1149-1349
               
               
               Cow position:chr1:60032545-60032747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):74, 89

               
               
               Conread position:1150-1305
               
               
               Cow position:chr1:61723965-61724125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1150-1324
               
               
               Cow position:chr1:54179830-54179655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 139

               
               
               Conread position:1150-1348
               
               
               Cow position:chr1:98372685-98372485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:1150-1349
               
               
               Cow position:chr1:5858634-5858836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1153-1346
               
               
               Cow position:chr1:98563212-98563018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 136

               
               
               Conread position:1153-1348
               
               
               Cow position:chr1:8359850-8360046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):154, 67

               
               
               Conread position:1154-1346
               
               
               Cow position:chr1:45535756-45535560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1154-1349
               
               
               Cow position:chr1:80631748-80631552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:1154-1429
               
               
               Cow position:chr1:70028629-70028350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):152, 82

               
               
               Conread position:1156-1348
               
               
               Cow position:chr1:20544344-20544148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:1157-1351
               
               
               Cow position:chr1:15169287-15169477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):68, 80

               
               
               Conread position:1158-1350
               
               
               Cow position:chr1:95017484-95017668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):149, 67

               
               
               Conread position:1158-1369
               
               
               Cow position:chr1:43447784-43448000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:1159-1365
               
               
               Cow position:chr1:99039311-99039517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:1160-1339
               
               
               Cow position:chr1:57635505-57635322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1160-1365
               
               
               Cow position:chr1:61351187-61350987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 81

               
               
               Conread position:1163-1347
               
               
               Cow position:chr1:82505015-82504827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:1163-1349
               
               
               Cow position:chr1:4691635-4691446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1163-1365
               
               
               Cow position:chr1:12870969-12871171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):77, 174

               
               
               Conread position:1164-1321
               
               
               Cow position:chr1:22394842-22394674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1164-1342
               
               
               Cow position:chr1:31234892-31235069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:1164-1346
               
               
               Cow position:chr1:22448542-22448732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1164-1347
               
               
               Cow position:chr1:52956297-52956107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:154
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1164-1348
               
               
               Cow position:chr1:43379985-43380175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 56

               
               
               Conread position:1164-1349
               
               
               Cow position:chr1:11853646-11853834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1164-1393
               
               
               Cow position:chr1:73561608-73561842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):65, 99

               
               
               Conread position:1165-1340
               
               
               Cow position:chr1:4573558-4573382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 55

               
               
               Conread position:1165-1348
               
               
               Cow position:chr1:1802176-1801992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:1167-1340
               
               
               Cow position:chr1:47009069-47008892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1167-1348
               
               
               Cow position:chr1:84240929-84240748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):8, 170

               
               
               Conread position:1168-1339
               
               
               Cow position:chr1:57263957-57264134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1171-1325
               
               
               Cow position:chr1:77502754-77502912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1171-1346
               
               
               Cow position:chr1:68996212-68996030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):135, 69

               
               
               Conread position:1171-1348
               
               
               Cow position:chr1:81471165-81470985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:1171-1365
               
               
               Cow position:chr1:91834255-91834063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 48

               
               
               Conread position:1172-1345
               
               
               Cow position:chr1:3243967-3243793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):134, 53

               
               
               Conread position:1172-1348
               
               
               Cow position:chr1:76222657-76222838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 125

               
               
               Conread position:1172-1367
               
               
               Cow position:chr1:51684838-51684635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):48, 178

               
               
               Conread position:1173-1348
               
               
               Cow position:chr1:79663643-79663809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1176-1339
               
               
               Cow position:chr1:6961935-6961769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1176-1346
               
               
               Cow position:chr1:11770265-11770436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:1176-1346
               
               
               Cow position:chr1:49297393-49297214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:1176-1347
               
               
               Cow position:chr1:38544437-38544607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:1176-1365
               
               
               Cow position:chr1:3244877-3244689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:1176-1371
               
               
               Cow position:chr1:64421358-64421166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):58, 105

               
               
               Conread position:1177-1336
               
               
               Cow position:chr1:84239083-84239248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1177-1349
               
               
               Cow position:chr1:61391758-61391937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1179-1365
               
               
               Cow position:chr1:78783572-78783382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:1180-1348
               
               
               Cow position:chr1:63905451-63905618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:144
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):126, 56

               
               
               Conread position:1180-1348
               
               
               Cow position:chr1:83593785-83593952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):126, 45

               
               
               Conread position:1181-1347
               
               
               Cow position:chr1:78184719-78184540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1182-1339
               
               
               Cow position:chr1:29900944-29901110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:1183-1340
               
               
               Cow position:chr1:15311883-15311730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:1183-1343
               
               
               Cow position:chr1:56674106-56674269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:1183-1348
               
               
               Cow position:chr1:24655978-24655814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1184-1311
               
               
               Cow position:chr1:80942567-80942437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1184-1340
               
               
               Cow position:chr1:85826366-85826204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1184-1348
               
               
               Cow position:chr1:33811949-33811782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:1184-1348
               
               
               Cow position:chr1:41954222-41954401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1184-1348
               
               
               Cow position:chr1:61725095-61725256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:1184-1348
               
               
               Cow position:chr1:64962648-64962816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 71

               
               
               Conread position:1184-1348
               
               
               Cow position:chr1:81472890-81472724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:1186-1349
               
               
               Cow position:chr1:3340957-3340793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:1187-1348
               
               
               Cow position:chr1:34000927-34000762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1187-1349
               
               
               Cow position:chr1:58419952-58419788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:1188-1308
               
               
               Cow position:chr1:44836208-44836329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:1188-1339
               
               
               Cow position:chr1:5409600-5409753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1191-1348
               
               
               Cow position:chr1:32596469-32596306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1191-1364
               
               
               Cow position:chr1:89437926-89438099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:1193-1340
               
               
               Cow position:chr1:8532203-8532354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1194-1312
               
               
               Cow position:chr1:61284064-61283941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1194-1346
               
               
               Cow position:chr1:19998033-19998181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 47

               
               
               Conread position:1194-1346
               
               
               Cow position:chr1:32013963-32013809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:1194-1346
               
               
               Cow position:chr1:99095373-99095216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1194-1348
               
               
               Cow position:chr1:5872958-5873119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:1194-1348
               
               
               Cow position:chr1:57900732-57900886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:1195-1365
               
               
               Cow position:chr1:81638413-81638238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:1196-1348
               
               
               Cow position:chr1:56658040-56657888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:1196-1348
               
               
               Cow position:chr1:75967438-75967284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1196-1365
               
               
               Cow position:chr1:4294064-4293893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 145

               
               
               Conread position:1196-1365
               
               
               Cow position:chr1:71818454-71818622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:1197-1345
               
               
               Cow position:chr1:12989052-12988901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:1197-1348
               
               
               Cow position:chr1:41004354-41004510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1198-1348
               
               
               Cow position:chr1:12595903-12596051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:1198-1348
               
               
               Cow position:chr1:22467942-22467783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:1203-1348
               
               
               Cow position:chr1:60372265-60372411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:1203-1365
               
               
               Cow position:chr1:98396960-98397124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1212-1348
               
               
               Cow position:chr1:33720109-33719970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:1212-1365
               
               
               Cow position:chr1:95327165-95327313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:1213-1349
               
               
               Cow position:chr1:100745597-100745458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1214-1348
               
               
               Cow position:chr1:89083098-89082963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1216-1347
               
               
               Cow position:chr1:3035007-3035139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:1218-1347
               
               
               Cow position:chr1:44165065-44164936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 5

               
               
               Conread position:1220-1349
               
               
               Cow position:chr1:50679300-50679434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1220-1349
               
               
               Cow position:chr1:94404193-94404064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):86, 20

               
               
               Conread position:1220-1361
               
               
               Cow position:chr1:20288101-20287958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1220-1366
               
               
               Cow position:chr1:53613214-53613362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:1222-1372
               
               
               Cow position:chr1:36874993-36874844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 76

               
               
               Conread position:1226-1349
               
               
               Cow position:chr1:4589500-4589622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:1226-1349
               
               
               Cow position:chr1:51818916-51818791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1227-1346
               
               
               Cow position:chr1:81179997-81180121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1227-1349
               
               
               Cow position:chr1:45673684-45673560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1228-1334
               
               
               Cow position:chr1:72422599-72422706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1229-1336
               
               
               Cow position:chr1:604163-604054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1231-1346
               
               
               Cow position:chr1:98708411-98708295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1232-1339
               
               
               Cow position:chr1:73536708-73536598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1232-1348
               
               
               Cow position:chr1:52506585-52506700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 50

               
               
               Conread position:1234-1347
               
               
               Cow position:chr1:49753896-49753784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1235-1345
               
               
               Cow position:chr1:56711652-56711764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1236-1334
               
               
               Cow position:chr1:30504437-30504338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1236-1348
               
               
               Cow position:chr1:97806754-97806641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1236-1381
               
               
               Cow position:chr1:59020243-59020096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1240-1340
               
               
               Cow position:chr1:89729012-89729113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1241-1340
               
               
               Cow position:chr1:21093053-21092953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1241-1348
               
               
               Cow position:chr1:7450091-7449982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1245-1348
               
               
               Cow position:chr1:19545142-19545246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1246-1338
               
               
               Cow position:chr1:36613319-36613412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0
Show alignments to all cow chromosomes.
Conread position:	973-1348
Cow position:	chr1:61565041-61564649 (view UCSC Genome Browser custom track)
Alignm length:	398
Alignm identity:	266
Alignm E-value:	5e-33
Alignm gaps (pig, cow):	12, 230
Conread position:	1014-1311
Cow position:	chr1:26427674-26427972 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	209
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	77, 24
Conread position:	1015-1222
Cow position:	chr1:88112060-88111856 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	151
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	55, 9
Conread position:	1018-1230
Cow position:	chr1:38205669-38205447 (view UCSC Genome Browser custom track)
Alignm length:	224
Alignm identity:	154
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	35, 16
Conread position:	1033-1348
Cow position:	chr1:100400014-100400349 (view UCSC Genome Browser custom track)
Alignm length:	339
Alignm identity:	236
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	63, 15
Conread position:	1046-1348
Cow position:	chr1:46218728-46218434 (view UCSC Genome Browser custom track)
Alignm length:	308
Alignm identity:	215
Alignm E-value:	7e-35
Alignm gaps (pig, cow):	172, 14
Conread position:	1051-1338
Cow position:	chr1:8349174-8349454 (view UCSC Genome Browser custom track)
Alignm length:	292
Alignm identity:	211
Alignm E-value:	4.00001e-40
Alignm gaps (pig, cow):	180, 15
Conread position:	1052-1346
Cow position:	chr1:75347779-75347475 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	201
Alignm E-value:	9e-27
Alignm gaps (pig, cow):	34, 85
Conread position:	1055-1348
Cow position:	chr1:26688321-26688622 (view UCSC Genome Browser custom track)
Alignm length:	304
Alignm identity:	202
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	30, 84
Conread position:	1057-1219
Cow position:	chr1:64706637-64706479 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	119
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	40, 0
Conread position:	1057-1230
Cow position:	chr1:74081833-74082009 (view UCSC Genome Browser custom track)
Alignm length:	177
Alignm identity:	126
Alignm E-value:	6e-23
Alignm gaps (pig, cow):	34, 0
Conread position:	1057-1314
Cow position:	chr1:81582263-81582008 (view UCSC Genome Browser custom track)
Alignm length:	265
Alignm identity:	186
Alignm E-value:	4e-30
Alignm gaps (pig, cow):	35, 51
Conread position:	1057-1316
Cow position:	chr1:52052566-52052835 (view UCSC Genome Browser custom track)
Alignm length:	270
Alignm identity:	190
Alignm E-value:	8e-36
Alignm gaps (pig, cow):	29, 0
Conread position:	1057-1334
Cow position:	chr1:9534311-9534038 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	208
Alignm E-value:	6.02558e-44
Alignm gaps (pig, cow):	27, 86
Conread position:	1057-1337
Cow position:	chr1:72732190-72731902 (view UCSC Genome Browser custom track)
Alignm length:	290
Alignm identity:	187
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	33, 241
Conread position:	1057-1338
Cow position:	chr1:77720092-77720372 (view UCSC Genome Browser custom track)
Alignm length:	293
Alignm identity:	207
Alignm E-value:	5e-32
Alignm gaps (pig, cow):	36, 129
Conread position:	1057-1346
Cow position:	chr1:23100050-23099754 (view UCSC Genome Browser custom track)
Alignm length:	300
Alignm identity:	196
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	57, 30
Conread position:	1057-1348
Cow position:	chr1:25383816-25383515 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	205
Alignm E-value:	1e-31
Alignm gaps (pig, cow):	15, 141
Conread position:	1057-1349
Cow position:	chr1:6304709-6305013 (view UCSC Genome Browser custom track)
Alignm length:	305
Alignm identity:	225
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 0
Conread position:	1057-1365
Cow position:	chr1:71045903-71045590 (view UCSC Genome Browser custom track)
Alignm length:	314
Alignm identity:	223
Alignm E-value:	0
Alignm gaps (pig, cow):	57, 0