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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8055I03.5
        

               
Conread position:
               
1025-1348
               

               
Cow position:
               
chr5:15426736-15426401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
1032-1348
               

               
Cow position:
               
chr5:62639100-62638779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
24, 156
               

               
Conread position:
               
1032-1348
               

               
Cow position:
               
chr5:62869848-62870163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
1038-1348
               

               
Cow position:
               
chr5:6286243-6286552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
1042-1349
               

               
Cow position:
               
chr5:39875308-39874994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
1047-1348
               

               
Cow position:
               
chr5:48758119-48757818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
1056-1354
               

               
Cow position:
               
chr5:60747117-60747410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
1057-1245
               

               
Cow position:
               
chr5:23527460-23527656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1057-1285
               

               
Cow position:
               
chr5:17267722-17267958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
1057-1336
               

               
Cow position:
               
chr5:28945890-28946186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
1057-1337
               

               
Cow position:
               
chr5:18899146-18898862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
1057-1337
               

               
Cow position:
               
chr5:66815401-66815692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
1057-1339
               

               
Cow position:
               
chr5:72006692-72006973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
1057-1339
               

               
Cow position:
               
chr5:72564938-72564641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1057-1346
               

               
Cow position:
               
chr5:8024022-8024321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
1057-1346
               

               
Cow position:
               
chr5:16025294-16025583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
42, 113
               

               
Conread position:
               
1057-1346
               

               
Cow position:
               
chr5:56680421-56680121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
1057-1346
               

               
Cow position:
               
chr5:63964003-63964295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
1057-1348
               

               
Cow position:
               
chr5:6528855-6528554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 231
               

               
Conread position:
               
1057-1348
               

               
Cow position:
               
chr5:27411231-27411520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
1057-1348
               

               
Cow position:
               
chr5:29844450-29844151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1057-1348
               

               
Cow position:
               
chr5:33080620-33080917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
33, 218
               

               
Conread position:
               
1057-1348
               

               
Cow position:
               
chr5:72952013-72951711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1057-1349
               

               
Cow position:
               
chr5:18554062-18553772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
1057-1365
               

               
Cow position:
               
chr5:71454442-71454740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 149
               

               
Conread position:
               
1057-1365
               

               
Cow position:
               
chr5:75436723-75437038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
1057-1369
               

               
Cow position:
               
chr5:19294330-19294635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
1060-1346
               

               
Cow position:
               
chr5:29903357-29903648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
1060-1347
               

               
Cow position:
               
chr5:34625134-34624845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 231
               

               
Conread position:
               
1060-1348
               

               
Cow position:
               
chr5:40387715-40387999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
1060-1364
               

               
Cow position:
               
chr5:58320304-58320611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
1063-1301
               

               
Cow position:
               
chr5:24175534-24175291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
105, 26
               

               
Conread position:
               
1063-1307
               

               
Cow position:
               
chr5:28035908-28035654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
1063-1348
               

               
Cow position:
               
chr5:56467854-56467572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
1063-1365
               

               
Cow position:
               
chr5:1949894-1950207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
1063-1367
               

               
Cow position:
               
chr5:34441616-34441937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 299
               

               
Conread position:
               
1064-1312
               

               
Cow position:
               
chr5:4617528-4617278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
56, 101
               

               
Conread position:
               
1064-1347
               

               
Cow position:
               
chr5:46610935-46611223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
1064-1348
               

               
Cow position:
               
chr5:23529120-23529401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
1065-1348
               

               
Cow position:
               
chr5:35763428-35763150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
1070-1372
               

               
Cow position:
               
chr5:7723821-7723519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
21, 179
               

               
Conread position:
               
1071-1263
               

               
Cow position:
               
chr5:40237368-40237171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1072-1348
               

               
Cow position:
               
chr5:48009704-48009977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
22, 119
               

               
Conread position:
               
1078-1348
               

               
Cow position:
               
chr5:57934962-57935237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1079-1321
               

               
Cow position:
               
chr5:41294224-41293979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
143, 103
               

               
Conread position:
               
1079-1348
               

               
Cow position:
               
chr5:52000361-52000094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
1089-1348
               

               
Cow position:
               
chr5:7755436-7755690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
216, 27
               

               
Conread position:
               
1089-1348
               

               
Cow position:
               
chr5:64175991-64176245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
1090-1312
               

               
Cow position:
               
chr5:15479259-15479034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
1090-1348
               

               
Cow position:
               
chr5:1396733-1396487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
255, 130
               

               
Conread position:
               
1090-1348
               

               
Cow position:
               
chr5:51935323-51935058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
1090-1348
               

               
Cow position:
               
chr5:71494955-71494689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 181
               

               
Conread position:
               
1091-1353
               

               
Cow position:
               
chr5:49474411-49474675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 204
               

               
Conread position:
               
1091-1355
               

               
Cow position:
               
chr5:31561667-31561397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
1093-1338
               

               
Cow position:
               
chr5:16893641-16893890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 200
               

               
Conread position:
               
1093-1346
               

               
Cow position:
               
chr5:65776253-65776508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 147
               

               
Conread position:
               
1093-1348
               

               
Cow position:
               
chr5:42744910-42744660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
136, 38
               

               
Conread position:
               
1093-1348
               

               
Cow position:
               
chr5:56518090-56518338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
18, 121
               

               
Conread position:
               
1094-1252
               

               
Cow position:
               
chr5:45574235-45574399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1094-1259
               

               
Cow position:
               
chr5:49501695-49501863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1094-1267
               

               
Cow position:
               
chr5:36839089-36838908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
1094-1268
               

               
Cow position:
               
chr5:58555267-58555093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
1094-1285
               

               
Cow position:
               
chr5:59626842-59627038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
1094-1305
               

               
Cow position:
               
chr5:1165295-1165090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
1094-1306
               

               
Cow position:
               
chr5:57101394-57101616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
125, 77
               

               
Conread position:
               
1094-1311
               

               
Cow position:
               
chr5:47323591-47323375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 96
               

               
Conread position:
               
1094-1312
               

               
Cow position:
               
chr5:59384561-59384782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
146, 72
               

               
Conread position:
               
1094-1333
               

               
Cow position:
               
chr5:13717441-13717684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 31
               

               
Conread position:
               
1094-1334
               

               
Cow position:
               
chr5:29352997-29353242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
126, 12
               

               
Conread position:
               
1094-1335
               

               
Cow position:
               
chr5:27171864-27172095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
213, 88
               

               
Conread position:
               
1094-1340
               

               
Cow position:
               
chr5:47696320-47696562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
1094-1343
               

               
Cow position:
               
chr5:32338836-32339087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
80, 172
               

               
Conread position:
               
1094-1345
               

               
Cow position:
               
chr5:35826731-35826478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
1094-1346
               

               
Cow position:
               
chr5:21828996-21828740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
135, 41
               

               
Conread position:
               
1094-1347
               

               
Cow position:
               
chr5:50943026-50943277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 114
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:3582689-3582447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
213, 141
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:6683238-6683483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
195, 75
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:11427106-11427366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:28927464-28927717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:51053519-51053776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
8, 94
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:52165049-52165307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:57575901-57575641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:65932813-65933058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 116
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:65941121-65941378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
134, 166
               

               
Conread position:
               
1094-1348
               

               
Cow position:
               
chr5:66582093-66581835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
56, 123
               

               
Conread position:
               
1094-1349
               

               
Cow position:
               
chr5:14473273-14473544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
10, 261
               

               
Conread position:
               
1094-1349
               

               
Cow position:
               
chr5:56070989-56070727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
1094-1366
               

               
Cow position:
               
chr5:35229014-35229276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
231, 24
               

               
Conread position:
               
1094-1371
               

               
Cow position:
               
chr5:25495228-25495501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
1095-1348
               

               
Cow position:
               
chr5:65588829-65588575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
1096-1322
               

               
Cow position:
               
chr5:64523736-64523969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
124, 159
               

               
Conread position:
               
1097-1239
               

               
Cow position:
               
chr5:57150793-57150650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 129
               

               
Conread position:
               
1097-1266
               

               
Cow position:
               
chr5:52001497-52001666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
111, 141
               

               
Conread position:
               
1097-1275
               

               
Cow position:
               
chr5:67118546-67118364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1097-1278
               

               
Cow position:
               
chr5:57156187-57156371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
1097-1279
               

               
Cow position:
               
chr5:61455970-61455787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 66
               

               
Conread position:
               
1097-1280
               

               
Cow position:
               
chr5:50101248-50101435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 174
               

               
Conread position:
               
1097-1284
               

               
Cow position:
               
chr5:7012725-7012911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
1097-1287
               

               
Cow position:
               
chr5:1461215-1461021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1097-1287
               

               
Cow position:
               
chr5:43604265-43604077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1097-1289
               

               
Cow position:
               
chr5:11769395-11769200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
136, 73
               

               
Conread position:
               
1097-1290
               

               
Cow position:
               
chr5:55795840-55796033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
64, 142
               

               
Conread position:
               
1097-1291
               

               
Cow position:
               
chr5:41981494-41981300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 72
               

               
Conread position:
               
1097-1298
               

               
Cow position:
               
chr5:57755909-57756108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
1097-1300
               

               
Cow position:
               
chr5:19752428-19752226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 62
               

               
Conread position:
               
1097-1304
               

               
Cow position:
               
chr5:50713630-50713854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1097-1305
               

               
Cow position:
               
chr5:66551770-66551983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1097-1312
               

               
Cow position:
               
chr5:50575909-50575693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
1097-1312
               

               
Cow position:
               
chr5:54086664-54086452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1097-1312
               

               
Cow position:
               
chr5:71015759-71015971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 124
               

               
Conread position:
               
1097-1314
               

               
Cow position:
               
chr5:30805290-30805074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
136, 69
               

               
Conread position:
               
1097-1319
               

               
Cow position:
               
chr5:55019418-55019194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
127, 161
               

               
Conread position:
               
1097-1323
               

               
Cow position:
               
chr5:59325716-59325940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
87, 78
               

               
Conread position:
               
1097-1324
               

               
Cow position:
               
chr5:54375376-54375611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1097-1325
               

               
Cow position:
               
chr5:35126181-35125949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
1097-1325
               

               
Cow position:
               
chr5:64758641-64758877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1097-1330
               

               
Cow position:
               
chr5:23678577-23678814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
1097-1332
               

               
Cow position:
               
chr5:7698126-7697893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
210, 128
               

               
Conread position:
               
1097-1332
               

               
Cow position:
               
chr5:58446933-58446691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
1097-1334
               

               
Cow position:
               
chr5:15598112-15598347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1097-1334
               

               
Cow position:
               
chr5:38076357-38076597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
1097-1335
               

               
Cow position:
               
chr5:43992450-43992206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
1097-1336
               

               
Cow position:
               
chr5:17999370-17999611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
131, 72
               

               
Conread position:
               
1097-1336
               

               
Cow position:
               
chr5:65886884-65887127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
127, 93
               

               
Conread position:
               
1097-1337
               

               
Cow position:
               
chr5:39258631-39258406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
210, 66
               

               
Conread position:
               
1097-1337
               

               
Cow position:
               
chr5:53710563-53710811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
141, 128
               

               
Conread position:
               
1097-1337
               

               
Cow position:
               
chr5:69337946-69337712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
193, 113
               

               
Conread position:
               
1097-1338
               

               
Cow position:
               
chr5:37808537-37808794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
134, 171
               

               
Conread position:
               
1097-1339
               

               
Cow position:
               
chr5:7057276-7057525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
122, 46
               

               
Conread position:
               
1097-1339
               

               
Cow position:
               
chr5:26990514-26990273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
1097-1339
               

               
Cow position:
               
chr5:36868861-36868621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
1097-1340
               

               
Cow position:
               
chr5:4031860-4032114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1097-1340
               

               
Cow position:
               
chr5:26476892-26477132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
210, 97
               

               
Conread position:
               
1097-1340
               

               
Cow position:
               
chr5:35459167-35459414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
49, 215
               

               
Conread position:
               
1097-1340
               

               
Cow position:
               
chr5:44796607-44796850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 155
               

               
Conread position:
               
1097-1340
               

               
Cow position:
               
chr5:44847895-44848146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
91, 131
               

               
Conread position:
               
1097-1340
               

               
Cow position:
               
chr5:54350235-54350488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1097-1342
               

               
Cow position:
               
chr5:36855332-36855082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1097-1345
               

               
Cow position:
               
chr5:11668059-11668311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
125, 137
               

               
Conread position:
               
1097-1345
               

               
Cow position:
               
chr5:25035132-25035368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
210, 66
               

               
Conread position:
               
1097-1345
               

               
Cow position:
               
chr5:35685061-35684813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
1097-1345
               

               
Cow position:
               
chr5:50600174-50599931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
51, 116
               

               
Conread position:
               
1097-1346
               

               
Cow position:
               
chr5:35246984-35247236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
87, 157
               

               
Conread position:
               
1097-1346
               

               
Cow position:
               
chr5:41452546-41452789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
134, 59
               

               
Conread position:
               
1097-1346
               

               
Cow position:
               
chr5:45225691-45225951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
128, 48
               

               
Conread position:
               
1097-1346
               

               
Cow position:
               
chr5:53055435-53055686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
1097-1346
               

               
Cow position:
               
chr5:64139686-64139440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
210, 145
               

               
Conread position:
               
1097-1346
               

               
Cow position:
               
chr5:64140664-64140404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
73, 189
               

               
Conread position:
               
1097-1347
               

               
Cow position:
               
chr5:4221104-4220857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 90
               

               
Conread position:
               
1097-1347
               

               
Cow position:
               
chr5:18289248-18289002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
1097-1347
               

               
Cow position:
               
chr5:21039857-21040103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
210, 45
               

               
Conread position:
               
1097-1347
               

               
Cow position:
               
chr5:55756289-55756558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:3204952-3204705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:4280574-4280333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 195
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:4710026-4710273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
210, 67
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:11229547-11229797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:14314654-14314397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:17062955-17063219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
110, 96
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:18574299-18574042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:19278580-19278828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 104
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:20779272-20779514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
137, 91
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:22242639-22242910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:22643106-22643346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
146, 55
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:23168700-23168953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
134, 194
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:24996097-24996351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
125, 50
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:26097415-26097167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
215, 97
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:26262553-26262800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
122, 61
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:26377542-26377795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:28224578-28224324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:30845236-30844985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
122, 66
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:30949789-30950044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 167
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:34562143-34561884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:35969658-35969414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
210, 86
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:37646207-37645949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 164
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:37646418-37646674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:43858294-43858560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 57
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:44752181-44752439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 176
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:46512643-46512891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
209, 45
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:50533262-50533515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
132, 55
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:50723172-50722920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:50821909-50821654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
131, 115
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:54311462-54311204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:54767783-54768038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 103
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:55068832-55068582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
134, 122
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:55177012-55176762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
124, 51
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:56524300-56524047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
123, 182
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:62172538-62172288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
141, 117
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:63426879-63427134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
123, 237
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:63987320-63987579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:65967605-65967856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
128, 149
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:69461461-69461206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
1097-1348
               

               
Cow position:
               
chr5:69731626-69731385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
1097-1349
               

               
Cow position:
               
chr5:6045422-6045162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1097-1349
               

               
Cow position:
               
chr5:19813094-19813344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
137, 160
               

               
Conread position:
               
1097-1349
               

               
Cow position:
               
chr5:42064331-42064069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1097-1349
               

               
Cow position:
               
chr5:53855832-53855565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1097-1349
               

               
Cow position:
               
chr5:57419668-57419922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 155
               

               
Conread position:
               
1097-1349
               

               
Cow position:
               
chr5:62142802-62142541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 193
               

               
Conread position:
               
1097-1355
               

               
Cow position:
               
chr5:3771972-3771705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
1097-1357
               

               
Cow position:
               
chr5:6503755-6504017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
1097-1365
               

               
Cow position:
               
chr5:26094040-26094311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
1097-1365
               

               
Cow position:
               
chr5:30253867-30253596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
1097-1365
               

               
Cow position:
               
chr5:39937241-39936957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
123, 86
               

               
Conread position:
               
1097-1365
               

               
Cow position:
               
chr5:58856228-58855958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 55
               

               
Conread position:
               
1097-1365
               

               
Cow position:
               
chr5:60715242-60715500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
130, 66
               

               
Conread position:
               
1097-1366
               

               
Cow position:
               
chr5:15721948-15722211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
210, 111
               

               
Conread position:
               
1097-1369
               

               
Cow position:
               
chr5:3639371-3639640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
129, 33
               

               
Conread position:
               
1097-1369
               

               
Cow position:
               
chr5:41713425-41713151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
1097-1371
               

               
Cow position:
               
chr5:5257162-5257442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 227
               

               
Conread position:
               
1097-1371
               

               
Cow position:
               
chr5:29771654-29771369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
122, 193
               

               
Conread position:
               
1097-1372
               

               
Cow position:
               
chr5:458614-458330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 48
               

               
Conread position:
               
1097-1372
               

               
Cow position:
               
chr5:28230290-28230006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
81, 243
               

               
Conread position:
               
1097-1372
               

               
Cow position:
               
chr5:37814752-37814472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 211
               

               
Conread position:
               
1097-1373
               

               
Cow position:
               
chr5:35208387-35208114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
132, 67
               

               
Conread position:
               
1097-1388
               

               
Cow position:
               
chr5:66972555-66972259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
1098-1238
               

               
Cow position:
               
chr5:59627225-59627086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1098-1282
               

               
Cow position:
               
chr5:45420012-45420195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
1098-1304
               

               
Cow position:
               
chr5:32394724-32394518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 162
               

               
Conread position:
               
1098-1304
               

               
Cow position:
               
chr5:61914690-61914487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
1098-1336
               

               
Cow position:
               
chr5:48573651-48573880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
145, 52
               

               
Conread position:
               
1098-1339
               

               
Cow position:
               
chr5:46509740-46509985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
131, 204
               

               
Conread position:
               
1098-1339
               

               
Cow position:
               
chr5:49920049-49919805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 121
               

               
Conread position:
               
1098-1340
               

               
Cow position:
               
chr5:38689414-38689664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
125, 8
               

               
Conread position:
               
1098-1346
               

               
Cow position:
               
chr5:27419604-27419848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
114, 103
               

               
Conread position:
               
1098-1348
               

               
Cow position:
               
chr5:6896002-6896251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
135, 70
               

               
Conread position:
               
1098-1348
               

               
Cow position:
               
chr5:16214812-16214559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
129, 230
               

               
Conread position:
               
1098-1348
               

               
Cow position:
               
chr5:37377978-37377743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 89
               

               
Conread position:
               
1098-1348
               

               
Cow position:
               
chr5:44028182-44028429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
131, 65
               

               
Conread position:
               
1098-1348
               

               
Cow position:
               
chr5:57737224-57736982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
208, 121
               

               
Conread position:
               
1098-1348
               

               
Cow position:
               
chr5:74858700-74858445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 70
               

               
Conread position:
               
1098-1349
               

               
Cow position:
               
chr5:30092493-30092756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 150
               

               
Conread position:
               
1098-1365
               

               
Cow position:
               
chr5:1247388-1247131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
122, 63
               

               
Conread position:
               
1099-1331
               

               
Cow position:
               
chr5:26594975-26595214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 197
               

               
Conread position:
               
1099-1340
               

               
Cow position:
               
chr5:16179387-16179645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 200
               

               
Conread position:
               
1099-1346
               

               
Cow position:
               
chr5:54060400-54060150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
129, 97
               

               
Conread position:
               
1099-1348
               

               
Cow position:
               
chr5:44993925-44994166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
208, 64
               

               
Conread position:
               
1099-1349
               

               
Cow position:
               
chr5:21534987-21535242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
139, 230
               

               
Conread position:
               
1099-1361
               

               
Cow position:
               
chr5:19335657-19335927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 33
               

               
Conread position:
               
1099-1365
               

               
Cow position:
               
chr5:17028219-17027953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
128, 194
               

               
Conread position:
               
1100-1308
               

               
Cow position:
               
chr5:37757716-37757913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1100-1317
               

               
Cow position:
               
chr5:23357452-23357238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
172, 57
               

               
Conread position:
               
1100-1317
               

               
Cow position:
               
chr5:57526806-57527014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1102-1312
               

               
Cow position:
               
chr5:1087078-1087288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
1102-1349
               

               
Cow position:
               
chr5:9390678-9390410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1102-1370
               

               
Cow position:
               
chr5:2309435-2309709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 156
               

               
Conread position:
               
1103-1286
               

               
Cow position:
               
chr5:63024904-63025105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1103-1291
               

               
Cow position:
               
chr5:67212481-67212286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1103-1312
               

               
Cow position:
               
chr5:63234709-63234921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
122, 73
               

               
Conread position:
               
1103-1325
               

               
Cow position:
               
chr5:56636015-56635795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
204, 105
               

               
Conread position:
               
1103-1337
               

               
Cow position:
               
chr5:3242363-3242593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
127, 20
               

               
Conread position:
               
1105-1365
               

               
Cow position:
               
chr5:39447417-39447676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
202, 119
               

               
Conread position:
               
1106-1349
               

               
Cow position:
               
chr5:50215445-50215685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
201, 27
               

               
Conread position:
               
1107-1340
               

               
Cow position:
               
chr5:59115498-59115261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
135, 62
               

               
Conread position:
               
1108-1348
               

               
Cow position:
               
chr5:36486608-36486363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
1110-1303
               

               
Cow position:
               
chr5:43403018-43402818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1110-1332
               

               
Cow position:
               
chr5:3492286-3492081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
197, 38
               

               
Conread position:
               
1110-1339
               

               
Cow position:
               
chr5:49440758-49440991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
117, 162
               

               
Conread position:
               
1110-1340
               

               
Cow position:
               
chr5:55929057-55928822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
117, 199
               

               
Conread position:
               
1110-1340
               

               
Cow position:
               
chr5:67932359-67932584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
121, 66
               

               
Conread position:
               
1110-1346
               

               
Cow position:
               
chr5:65883659-65883902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
1110-1348
               

               
Cow position:
               
chr5:37425856-37425618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
1110-1348
               

               
Cow position:
               
chr5:41129855-41129633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1110-1348
               

               
Cow position:
               
chr5:53842407-53842156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1113-1286
               

               
Cow position:
               
chr5:20843284-20843465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1113-1327
               

               
Cow position:
               
chr5:4927456-4927674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
1113-1333
               

               
Cow position:
               
chr5:57561633-57561404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1113-1335
               

               
Cow position:
               
chr5:12902027-12901800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
1113-1339
               

               
Cow position:
               
chr5:57767875-57768103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
129, 77
               

               
Conread position:
               
1113-1348
               

               
Cow position:
               
chr5:25899764-25899998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
1113-1348
               

               
Cow position:
               
chr5:27008006-27007771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
1113-1348
               

               
Cow position:
               
chr5:39695761-39695525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
108, 20
               

               
Conread position:
               
1113-1348
               

               
Cow position:
               
chr5:45273391-45273629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 112
               

               
Conread position:
               
1113-1348
               

               
Cow position:
               
chr5:52644970-52645208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1113-1365
               

               
Cow position:
               
chr5:47316864-47317115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
201, 118
               

               
Conread position:
               
1113-1392
               

               
Cow position:
               
chr5:35209367-35209649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
110, 20
               

               
Conread position:
               
1114-1348
               

               
Cow position:
               
chr5:43737854-43738080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
193, 92
               

               
Conread position:
               
1114-1348
               

               
Cow position:
               
chr5:73167902-73168126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
189, 104
               

               
Conread position:
               
1115-1349
               

               
Cow position:
               
chr5:57074223-57074463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
124, 151
               

               
Conread position:
               
1117-1346
               

               
Cow position:
               
chr5:21525265-21525042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
190, 58
               

               
Conread position:
               
1118-1346
               

               
Cow position:
               
chr5:26370788-26370570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
189, 107
               

               
Conread position:
               
1118-1348
               

               
Cow position:
               
chr5:14154252-14154019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
1118-1348
               

               
Cow position:
               
chr5:29828152-29827921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
1118-1365
               

               
Cow position:
               
chr5:7552311-7552564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1119-1326
               

               
Cow position:
               
chr5:53947001-53946789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1119-1328
               

               
Cow position:
               
chr5:43371091-43371306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
1119-1346
               

               
Cow position:
               
chr5:4506861-4507083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
1119-1346
               

               
Cow position:
               
chr5:31469489-31469711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
1119-1346
               

               
Cow position:
               
chr5:36255153-36255386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
110, 174
               

               
Conread position:
               
1119-1346
               

               
Cow position:
               
chr5:44049802-44049572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
1119-1346
               

               
Cow position:
               
chr5:52040219-52040444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
1119-1346
               

               
Cow position:
               
chr5:61576649-61576415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
1119-1348
               

               
Cow position:
               
chr5:61809582-61809813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
1119-1349
               

               
Cow position:
               
chr5:33414307-33414542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
1119-1349
               

               
Cow position:
               
chr5:34050222-34049982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1119-1349
               

               
Cow position:
               
chr5:47870938-47871176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
109, 35
               

               
Conread position:
               
1119-1371
               

               
Cow position:
               
chr5:44726230-44726477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
114, 95
               

               
Conread position:
               
1120-1339
               

               
Cow position:
               
chr5:27102691-27102913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1120-1339
               

               
Cow position:
               
chr5:41165191-41164969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
104, 211
               

               
Conread position:
               
1120-1344
               

               
Cow position:
               
chr5:45845588-45845816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
105, 152
               

               
Conread position:
               
1120-1346
               

               
Cow position:
               
chr5:65752963-65752730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1120-1348
               

               
Cow position:
               
chr5:12761015-12761244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
186, 105
               

               
Conread position:
               
1120-1348
               

               
Cow position:
               
chr5:30276793-30276569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
187, 95
               

               
Conread position:
               
1120-1348
               

               
Cow position:
               
chr5:30629053-30629286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 145
               

               
Conread position:
               
1120-1348
               

               
Cow position:
               
chr5:44446762-44446996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
89, 126
               

               
Conread position:
               
1120-1348
               

               
Cow position:
               
chr5:47601915-47601691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
185, 104
               

               
Conread position:
               
1120-1348
               

               
Cow position:
               
chr5:53835819-53835586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
1120-1348
               

               
Cow position:
               
chr5:64321857-64321625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 186
               

               
Conread position:
               
1120-1348
               

               
Cow position:
               
chr5:66366612-66366390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
1120-1349
               

               
Cow position:
               
chr5:38833224-38832994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
116, 56
               

               
Conread position:
               
1120-1365
               

               
Cow position:
               
chr5:58793504-58793756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
99, 217
               

               
Conread position:
               
1120-1369
               

               
Cow position:
               
chr5:31918745-31918501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
187, 40
               

               
Conread position:
               
1120-1371
               

               
Cow position:
               
chr5:41009901-41010142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
1120-1389
               

               
Cow position:
               
chr5:46425752-46426021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
100, 125
               

               
Conread position:
               
1121-1330
               

               
Cow position:
               
chr5:60183907-60183691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1121-1336
               

               
Cow position:
               
chr5:50637923-50637710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
6, 13
               

               
Conread position:
               
1121-1337
               

               
Cow position:
               
chr5:33560632-33560851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
103, 118
               

               
Conread position:
               
1121-1339
               

               
Cow position:
               
chr5:45574722-45574497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 223
               

               
Conread position:
               
1121-1339
               

               
Cow position:
               
chr5:56028439-56028646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
186, 70
               

               
Conread position:
               
1121-1346
               

               
Cow position:
               
chr5:30302993-30302767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
1121-1348
               

               
Cow position:
               
chr5:740838-741073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
1121-1348
               

               
Cow position:
               
chr5:7044603-7044835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1121-1348
               

               
Cow position:
               
chr5:14550482-14550710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
185, 119
               

               
Conread position:
               
1121-1348
               

               
Cow position:
               
chr5:32696721-32696948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
1122-1344
               

               
Cow position:
               
chr5:66257737-66257515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
1122-1346
               

               
Cow position:
               
chr5:21617559-21617332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
117, 101
               

               
Conread position:
               
1122-1346
               

               
Cow position:
               
chr5:56317390-56317172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
188, 41
               

               
Conread position:
               
1122-1348
               

               
Cow position:
               
chr5:34463477-34463713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1122-1348
               

               
Cow position:
               
chr5:56877582-56877360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
1122-1349
               

               
Cow position:
               
chr5:37189996-37190224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
179, 207
               

               
Conread position:
               
1122-1349
               

               
Cow position:
               
chr5:51151253-51151488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 139
               

               
Conread position:
               
1122-1365
               

               
Cow position:
               
chr5:61840289-61840041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
184, 98
               

               
Conread position:
               
1122-1365
               

               
Cow position:
               
chr5:65601558-65601315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 138
               

               
Conread position:
               
1123-1348
               

               
Cow position:
               
chr5:34483434-34483663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
84, 10
               

               
Conread position:
               
1124-1345
               

               
Cow position:
               
chr5:6890921-6891143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
110, 52
               

               
Conread position:
               
1125-1349
               

               
Cow position:
               
chr5:35231639-35231414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
1126-1365
               

               
Cow position:
               
chr5:39094646-39094407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
181, 5
               

               
Conread position:
               
1127-1349
               

               
Cow position:
               
chr5:34638979-34638755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
94, 13
               

               
Conread position:
               
1128-1345
               

               
Cow position:
               
chr5:65765034-65765253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
84, 115
               

               
Conread position:
               
1128-1348
               

               
Cow position:
               
chr5:55966785-55967007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1128-1365
               

               
Cow position:
               
chr5:19778478-19778725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
1128-1365
               

               
Cow position:
               
chr5:55956003-55955764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
38, 42
               

               
Conread position:
               
1129-1349
               

               
Cow position:
               
chr5:63647383-63647602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
1130-1312
               

               
Cow position:
               
chr5:49685178-49685361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1130-1323
               

               
Cow position:
               
chr5:44737421-44737614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 62
               

               
Conread position:
               
1130-1324
               

               
Cow position:
               
chr5:12557194-12557396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1130-1338
               

               
Cow position:
               
chr5:16509199-16508977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1130-1339
               

               
Cow position:
               
chr5:73080298-73080083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
31, 166
               

               
Conread position:
               
1130-1346
               

               
Cow position:
               
chr5:14629717-14629939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1130-1348
               

               
Cow position:
               
chr5:5110981-5111201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
94, 202
               

               
Conread position:
               
1130-1348
               

               
Cow position:
               
chr5:9894030-9894255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 73
               

               
Conread position:
               
1130-1348
               

               
Cow position:
               
chr5:16206062-16206284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
1130-1348
               

               
Cow position:
               
chr5:69520984-69520765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
1130-1349
               

               
Cow position:
               
chr5:40109585-40109370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 20
               

               
Conread position:
               
1131-1299
               

               
Cow position:
               
chr5:37893426-37893255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1131-1307
               

               
Cow position:
               
chr5:61492185-61492011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1131-1317
               

               
Cow position:
               
chr5:33834134-33833948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 110
               

               
Conread position:
               
1131-1317
               

               
Cow position:
               
chr5:59872988-59873187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1131-1321
               

               
Cow position:
               
chr5:36650645-36650448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1131-1323
               

               
Cow position:
               
chr5:22188763-22188558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1131-1323
               

               
Cow position:
               
chr5:31475774-31475578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
1131-1325
               

               
Cow position:
               
chr5:64168147-64168345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
1131-1334
               

               
Cow position:
               
chr5:12873843-12873623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1131-1334
               

               
Cow position:
               
chr5:40039674-40039884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1131-1338
               

               
Cow position:
               
chr5:19523992-19523779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1131-1339
               

               
Cow position:
               
chr5:42845501-42845725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1131-1340
               

               
Cow position:
               
chr5:32153227-32153435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 103
               

               
Conread position:
               
1131-1344
               

               
Cow position:
               
chr5:64137348-64137127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1131-1346
               

               
Cow position:
               
chr5:5201993-5201791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
178, 51
               

               
Conread position:
               
1131-1346
               

               
Cow position:
               
chr5:47704034-47704256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1131-1346
               

               
Cow position:
               
chr5:48829246-48829032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
111, 89
               

               
Conread position:
               
1131-1346
               

               
Cow position:
               
chr5:57591780-57591568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 71
               

               
Conread position:
               
1131-1346
               

               
Cow position:
               
chr5:71723168-71722939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1131-1348
               

               
Cow position:
               
chr5:9089931-9090148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 106
               

               
Conread position:
               
1131-1348
               

               
Cow position:
               
chr5:11539958-11540176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
175, 110
               

               
Conread position:
               
1131-1348
               

               
Cow position:
               
chr5:24349199-24348979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1131-1348
               

               
Cow position:
               
chr5:47547631-47547846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
180, 9
               

               
Conread position:
               
1131-1348
               

               
Cow position:
               
chr5:58490821-58490589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
1131-1348
               

               
Cow position:
               
chr5:72903144-72903360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
151, 33
               

               
Conread position:
               
1131-1348
               

               
Cow position:
               
chr5:74643586-74643799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
176, 33
               

               
Conread position:
               
1131-1349
               

               
Cow position:
               
chr5:22738197-22737979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
115, 87
               

               
Conread position:
               
1131-1349
               

               
Cow position:
               
chr5:34887103-34887324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 130
               

               
Conread position:
               
1131-1349
               

               
Cow position:
               
chr5:45409415-45409194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 163
               

               
Conread position:
               
1131-1349
               

               
Cow position:
               
chr5:50858026-50857808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
1131-1365
               

               
Cow position:
               
chr5:20128144-20127912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
176, 141
               

               
Conread position:
               
1131-1365
               

               
Cow position:
               
chr5:40889205-40889429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
176, 88
               

               
Conread position:
               
1132-1332
               

               
Cow position:
               
chr5:29213029-29212832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
1132-1346
               

               
Cow position:
               
chr5:5938413-5938198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
1132-1346
               

               
Cow position:
               
chr5:33552332-33552534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
174, 92
               

               
Conread position:
               
1132-1346
               

               
Cow position:
               
chr5:34301003-34300790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
1132-1348
               

               
Cow position:
               
chr5:62107395-62107619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
47, 77
               

               
Conread position:
               
1132-1349
               

               
Cow position:
               
chr5:359848-360073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1133-1332
               

               
Cow position:
               
chr5:71845829-71846036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
1133-1346
               

               
Cow position:
               
chr5:54048263-54048475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
97, 139
               

               
Conread position:
               
1133-1348
               

               
Cow position:
               
chr5:67540111-67540331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
91, 126
               

               
Conread position:
               
1133-1372
               

               
Cow position:
               
chr5:32672975-32673214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
1134-1333
               

               
Cow position:
               
chr5:34192996-34192786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
1134-1348
               

               
Cow position:
               
chr5:57327890-57327668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
1135-1325
               

               
Cow position:
               
chr5:67645050-67645248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1135-1372
               

               
Cow position:
               
chr5:41951008-41951236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
92, 71
               

               
Conread position:
               
1138-1348
               

               
Cow position:
               
chr5:31144702-31144915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 125
               

               
Conread position:
               
1138-1348
               

               
Cow position:
               
chr5:46122268-46122478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
88, 76
               

               
Conread position:
               
1140-1371
               

               
Cow position:
               
chr5:47313556-47313325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 54
               

               
Conread position:
               
1141-1348
               

               
Cow position:
               
chr5:991546-991338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
1142-1339
               

               
Cow position:
               
chr5:32975474-32975672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
1142-1340
               

               
Cow position:
               
chr5:25447645-25447441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
1144-1348
               

               
Cow position:
               
chr5:27155096-27154895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 77
               

               
Conread position:
               
1145-1348
               

               
Cow position:
               
chr5:62985602-62985392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
1146-1372
               

               
Cow position:
               
chr5:35449313-35449102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
160, 73
               

               
Conread position:
               
1147-1346
               

               
Cow position:
               
chr5:58229772-58229575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
159, 73
               

               
Conread position:
               
1147-1348
               

               
Cow position:
               
chr5:21920456-21920243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
1147-1348
               

               
Cow position:
               
chr5:28926104-28926312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1147-1372
               

               
Cow position:
               
chr5:32140632-32140859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
84, 132
               

               
Conread position:
               
1149-1347
               

               
Cow position:
               
chr5:6670119-6670321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
82, 131
               

               
Conread position:
               
1150-1346
               

               
Cow position:
               
chr5:28456332-28456533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
1150-1346
               

               
Cow position:
               
chr5:28459633-28459835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
1150-1346
               

               
Cow position:
               
chr5:50972599-50972404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
1150-1348
               

               
Cow position:
               
chr5:12566668-12566856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 100
               

               
Conread position:
               
1150-1365
               

               
Cow position:
               
chr5:58144528-58144749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1151-1303
               

               
Cow position:
               
chr5:34107307-34107154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
1151-1342
               

               
Cow position:
               
chr5:55750192-55750374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
155, 39
               

               
Conread position:
               
1151-1365
               

               
Cow position:
               
chr5:34885091-34885301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
156, 66
               

               
Conread position:
               
1151-1365
               

               
Cow position:
               
chr5:49361924-49362133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
78, 18
               

               
Conread position:
               
1151-1365
               

               
Cow position:
               
chr5:56820189-56820407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
1152-1313
               

               
Cow position:
               
chr5:72286844-72287005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
120, 73
               

               
Conread position:
               
1152-1337
               

               
Cow position:
               
chr5:30487313-30487119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1153-1346
               

               
Cow position:
               
chr5:2500109-2500315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
54, 60
               

               
Conread position:
               
1154-1346
               

               
Cow position:
               
chr5:32956026-32956222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
1154-1349
               

               
Cow position:
               
chr5:21964358-21964156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1156-1372
               

               
Cow position:
               
chr5:75230734-75230532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
151, 27
               

               
Conread position:
               
1157-1347
               

               
Cow position:
               
chr5:29979916-29980110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
63, 153
               

               
Conread position:
               
1160-1339
               

               
Cow position:
               
chr5:32378909-32378740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
1160-1345
               

               
Cow position:
               
chr5:3280809-3280996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
1162-1349
               

               
Cow position:
               
chr5:3668959-3668772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
1163-1345
               

               
Cow position:
               
chr5:3002975-3002793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
1163-1349
               

               
Cow position:
               
chr5:69047305-69047491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 5
               

               
Conread position:
               
1164-1348
               

               
Cow position:
               
chr5:54404831-54405020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
1164-1349
               

               
Cow position:
               
chr5:23866112-23866292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
143, 54
               

               
Conread position:
               
1164-1366
               

               
Cow position:
               
chr5:1766290-1766490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
70, 140
               

               
Conread position:
               
1165-1346
               

               
Cow position:
               
chr5:54713673-54713863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
59, 173
               

               
Conread position:
               
1165-1349
               

               
Cow position:
               
chr5:41531027-41531213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
1165-1369
               

               
Cow position:
               
chr5:44583077-44583277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
1166-1347
               

               
Cow position:
               
chr5:35235652-35235836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
1168-1334
               

               
Cow position:
               
chr5:51800917-51801087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1168-1346
               

               
Cow position:
               
chr5:3004778-3004604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 73
               

               
Conread position:
               
1170-1339
               

               
Cow position:
               
chr5:24485381-24485555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
59, 130
               

               
Conread position:
               
1171-1349
               

               
Cow position:
               
chr5:1027642-1027821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
135, 52
               

               
Conread position:
               
1171-1349
               

               
Cow position:
               
chr5:38683411-38683226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1171-1365
               

               
Cow position:
               
chr5:54064828-54064633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 71
               

               
Conread position:
               
1172-1349
               

               
Cow position:
               
chr5:37941738-37941919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
1173-1348
               

               
Cow position:
               
chr5:12709941-12709757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1173-1365
               

               
Cow position:
               
chr5:42777815-42777619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
51, 173
               

               
Conread position:
               
1174-1369
               

               
Cow position:
               
chr5:7921355-7921549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
1176-1344
               

               
Cow position:
               
chr5:60448263-60448090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1176-1348
               

               
Cow position:
               
chr5:26790408-26790584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 85
               

               
Conread position:
               
1176-1349
               

               
Cow position:
               
chr5:34115700-34115522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
51, 171
               

               
Conread position:
               
1177-1348
               

               
Cow position:
               
chr5:7140060-7140239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1178-1348
               

               
Cow position:
               
chr5:47888666-47888839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 78
               

               
Conread position:
               
1178-1361
               

               
Cow position:
               
chr5:21944443-21944255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
1183-1326
               

               
Cow position:
               
chr5:56469782-56469932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1183-1348
               

               
Cow position:
               
chr5:50975942-50975764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1183-1349
               

               
Cow position:
               
chr5:40169148-40169317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
1184-1312
               

               
Cow position:
               
chr5:20345201-20345075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 89
               

               
Conread position:
               
1184-1346
               

               
Cow position:
               
chr5:8994526-8994692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1184-1348
               

               
Cow position:
               
chr5:71579215-71579046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1184-1349
               

               
Cow position:
               
chr5:16185127-16184958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1184-1365
               

               
Cow position:
               
chr5:43395110-43395284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
1187-1330
               

               
Cow position:
               
chr5:42748187-42748046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
1187-1341
               

               
Cow position:
               
chr5:2288513-2288671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
41, 55
               

               
Conread position:
               
1187-1346
               

               
Cow position:
               
chr5:23856122-23856292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
1187-1347
               

               
Cow position:
               
chr5:34467061-34467224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1187-1348
               

               
Cow position:
               
chr5:17644618-17644784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1187-1350
               

               
Cow position:
               
chr5:49821176-49821014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
115, 74
               

               
Conread position:
               
1188-1348
               

               
Cow position:
               
chr5:59443213-59443376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
1188-1349
               

               
Cow position:
               
chr5:6130389-6130223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1188-1365
               

               
Cow position:
               
chr5:56134929-56135114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 105
               

               
Conread position:
               
1189-1339
               

               
Cow position:
               
chr5:30638829-30638978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
1190-1312
               

               
Cow position:
               
chr5:59257924-59257801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
1192-1364
               

               
Cow position:
               
chr5:56433840-56433660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1193-1349
               

               
Cow position:
               
chr5:14420310-14420470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
1194-1317
               

               
Cow position:
               
chr5:29860380-29860250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1194-1348
               

               
Cow position:
               
chr5:56334716-56334550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1194-1361
               

               
Cow position:
               
chr5:47721573-47721396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
1195-1310
               

               
Cow position:
               
chr5:23866652-23866766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 80
               

               
Conread position:
               
1197-1365
               

               
Cow position:
               
chr5:43474871-43474702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
1198-1348
               

               
Cow position:
               
chr5:41226962-41227112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
1198-1349
               

               
Cow position:
               
chr5:58460372-58460526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1198-1350
               

               
Cow position:
               
chr5:50950579-50950424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
1203-1361
               

               
Cow position:
               
chr5:72150270-72150106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1208-1412
               

               
Cow position:
               
chr5:44849716-44849914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 43
               

               
Conread position:
               
1211-1348
               

               
Cow position:
               
chr5:53145871-53146011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
1213-1345
               

               
Cow position:
               
chr5:64060284-64060419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
1214-1348
               

               
Cow position:
               
chr5:31020131-31020263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
1216-1350
               

               
Cow position:
               
chr5:35145354-35145219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1219-1346
               

               
Cow position:
               
chr5:51490755-51490885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1220-1339
               

               
Cow position:
               
chr5:19079118-19078994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1220-1347
               

               
Cow position:
               
chr5:40356864-40356994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1223-1348
               

               
Cow position:
               
chr5:45037019-45036893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 77
               

               
Conread position:
               
1227-1348
               

               
Cow position:
               
chr5:32963637-32963758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
1227-1366
               

               
Cow position:
               
chr5:18090718-18090577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1228-1340
               

               
Cow position:
               
chr5:72845787-72845901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1229-1342
               

               
Cow position:
               
chr5:57271273-57271390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1230-1348
               

               
Cow position:
               
chr5:60520153-60520037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
77, 98
               

               
Conread position:
               
1230-1349
               

               
Cow position:
               
chr5:30816710-30816590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 97
               

               
Conread position:
               
1232-1346
               

               
Cow position:
               
chr5:43844805-43844921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 48
               
Show alignments to all cow chromosomes.