Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8055I03.5
        

               Conread position:
               1038-1289
               

               Cow position:
               chr6:16352143-16352401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               53, 22
               

               Conread position:
               1053-1365
               

               Cow position:
               chr6:27815289-27815600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               99, 9
               

               Conread position:
               1057-1278
               

               Cow position:
               chr6:36454412-36454634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               34, 148
               

               Conread position:
               1057-1284
               

               Cow position:
               chr6:51294469-51294234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               33, 89
               

               Conread position:
               1057-1320
               

               Cow position:
               chr6:37463207-37462936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               36, 223
               

               Conread position:
               1057-1326
               

               Cow position:
               chr6:10487763-10487495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               163, 31
               

               Conread position:
               1057-1339
               

               Cow position:
               chr6:4864371-4864653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 30
               

               Conread position:
               1057-1346
               

               Cow position:
               chr6:56376166-56376464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               32, 84
               

               Conread position:
               1057-1348
               

               Cow position:
               chr6:12501034-12500750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               221
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               29, 138
               

               Conread position:
               1057-1349
               

               Cow position:
               chr6:36652601-36652304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               176, 26
               

               Conread position:
               1057-1358
               

               Cow position:
               chr6:20196124-20196416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 40
               

               Conread position:
               1057-1365
               

               Cow position:
               chr6:17090783-17090468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               36, 127
               

               Conread position:
               1057-1369
               

               Cow position:
               chr6:45064833-45065149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 241
               

               Conread position:
               1060-1280
               

               Cow position:
               chr6:47305973-47306183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               1060-1339
               

               Cow position:
               chr6:29210676-29210394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               54, 134
               

               Conread position:
               1064-1348
               

               Cow position:
               chr6:34195967-34196264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               1064-1348
               

               Cow position:
               chr6:38218838-38218558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               206
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               170, 33
               

               Conread position:
               1065-1275
               

               Cow position:
               chr6:44623782-44623567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               23, 11
               

               Conread position:
               1065-1348
               

               Cow position:
               chr6:16626126-16625833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               25, 207
               

               Conread position:
               1069-1340
               

               Cow position:
               chr6:28999767-29000031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               38, 153
               

               Conread position:
               1070-1349
               

               Cow position:
               chr6:54936749-54936463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               1075-1348
               

               Cow position:
               chr6:32122071-32121797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               39, 185
               

               Conread position:
               1079-1348
               

               Cow position:
               chr6:59069463-59069738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               203
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               57, 18
               

               Conread position:
               1081-1348
               

               Cow position:
               chr6:47640276-47640547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               1090-1303
               

               Cow position:
               chr6:9302572-9302784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               14, 74
               

               Conread position:
               1090-1334
               

               Cow position:
               chr6:19013211-19012965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               9, 58
               

               Conread position:
               1090-1365
               

               Cow position:
               chr6:6343578-6343295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 165
               

               Conread position:
               1093-1339
               

               Cow position:
               chr6:49002596-49002839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               137, 76
               

               Conread position:
               1094-1261
               

               Cow position:
               chr6:51086209-51086044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               136, 11
               

               Conread position:
               1094-1287
               

               Cow position:
               chr6:48469143-48468952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               134, 157
               

               Conread position:
               1094-1296
               

               Cow position:
               chr6:51399217-51399023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1094-1312
               

               Cow position:
               chr6:8600143-8599928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               11, 70
               

               Conread position:
               1094-1317
               

               Cow position:
               chr6:38441315-38441092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               175
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               126, 82
               

               Conread position:
               1094-1317
               

               Cow position:
               chr6:65259348-65259560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               135, 66
               

               Conread position:
               1094-1322
               

               Cow position:
               chr6:6067557-6067780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               10, 133
               

               Conread position:
               1094-1323
               

               Cow position:
               chr6:143231-143457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               11, 89
               

               Conread position:
               1094-1336
               

               Cow position:
               chr6:1429783-1429537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 206
               

               Conread position:
               1094-1340
               

               Cow position:
               chr6:3952661-3952413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               1094-1340
               

               Cow position:
               chr6:10176159-10176408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               213, 125
               

               Conread position:
               1094-1340
               

               Cow position:
               chr6:35181114-35181364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               134, 117
               

               Conread position:
               1094-1340
               

               Cow position:
               chr6:50984365-50984119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               212, 143
               

               Conread position:
               1094-1341
               

               Cow position:
               chr6:43345299-43345553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               33, 40
               

               Conread position:
               1094-1346
               

               Cow position:
               chr6:11246910-11246651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 85
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:611690-611448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               140, 24
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:5113910-5114159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               212, 75
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:6401094-6400839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               121, 68
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:8562862-8562606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               19, 30
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:10225513-10225753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               212, 79
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:12551413-12551156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               10, 77
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:26450455-26450207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               149, 70
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:26728389-26728640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               192, 107
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:35842801-35842536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               136, 109
               

               Conread position:
               1094-1348
               

               Cow position:
               chr6:53519481-53519737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               158, 236
               

               Conread position:
               1094-1365
               

               Cow position:
               chr6:42565831-42565558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 243
               

               Conread position:
               1094-1372
               

               Cow position:
               chr6:33206879-33206608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               112, 76
               

               Conread position:
               1095-1313
               

               Cow position:
               chr6:2623914-2623703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               134, 8
               

               Conread position:
               1095-1348
               

               Cow position:
               chr6:36194736-36194477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               131, 15
               

               Conread position:
               1097-1227
               

               Cow position:
               chr6:37692889-37692761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               1097-1232
               

               Cow position:
               chr6:67805875-67806010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1097-1238
               

               Cow position:
               chr6:36012042-36011903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               132, 65
               

               Conread position:
               1097-1257
               

               Cow position:
               chr6:17527225-17527384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               127, 16
               

               Conread position:
               1097-1258
               

               Cow position:
               chr6:49096314-49096467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               1097-1264
               

               Cow position:
               chr6:41655902-41656073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               1097-1287
               

               Cow position:
               chr6:19131570-19131378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               130, 174
               

               Conread position:
               1097-1288
               

               Cow position:
               chr6:56986511-56986699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               181, 72
               

               Conread position:
               1097-1290
               

               Cow position:
               chr6:68652211-68652408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1097-1291
               

               Cow position:
               chr6:17527449-17527644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               123, 86
               

               Conread position:
               1097-1293
               

               Cow position:
               chr6:18144337-18144135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               79, 174
               

               Conread position:
               1097-1294
               

               Cow position:
               chr6:51530048-51530245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               88, 129
               

               Conread position:
               1097-1299
               

               Cow position:
               chr6:35896213-35896404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               123, 66
               

               Conread position:
               1097-1304
               

               Cow position:
               chr6:24339423-24339215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               57, 157
               

               Conread position:
               1097-1304
               

               Cow position:
               chr6:61142422-61142633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               164
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               1097-1310
               

               Cow position:
               chr6:22525469-22525257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               1097-1310
               

               Cow position:
               chr6:37395260-37395483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1097-1311
               

               Cow position:
               chr6:2153459-2153668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               134, 184
               

               Conread position:
               1097-1311
               

               Cow position:
               chr6:11830328-11830118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               138, 34
               

               Conread position:
               1097-1311
               

               Cow position:
               chr6:24536392-24536618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               30, 36
               

               Conread position:
               1097-1312
               

               Cow position:
               chr6:16103058-16103271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               130, 13
               

               Conread position:
               1097-1312
               

               Cow position:
               chr6:17816854-17817059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1312
               

               Cow position:
               chr6:41375909-41375693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1316
               

               Cow position:
               chr6:12091853-12092075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1316
               

               Cow position:
               chr6:67282034-67281812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               208, 104
               

               Conread position:
               1097-1325
               

               Cow position:
               chr6:17548834-17549072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               1097-1325
               

               Cow position:
               chr6:17794624-17794847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               144, 122
               

               Conread position:
               1097-1325
               

               Cow position:
               chr6:44867403-44867632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               209, 123
               

               Conread position:
               1097-1325
               

               Cow position:
               chr6:63298891-63299123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               1097-1326
               

               Cow position:
               chr6:19045762-19045532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1330
               

               Cow position:
               chr6:19292941-19292702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               143, 170
               

               Conread position:
               1097-1330
               

               Cow position:
               chr6:66375193-66375426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               210, 128
               

               Conread position:
               1097-1331
               

               Cow position:
               chr6:13565226-13564987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               122, 85
               

               Conread position:
               1097-1334
               

               Cow position:
               chr6:6060432-6060663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               122, 134
               

               Conread position:
               1097-1334
               

               Cow position:
               chr6:16316456-16316206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1334
               

               Cow position:
               chr6:16707152-16706902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               128, 66
               

               Conread position:
               1097-1334
               

               Cow position:
               chr6:16764506-16764752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               71, 175
               

               Conread position:
               1097-1334
               

               Cow position:
               chr6:27888491-27888249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1334
               

               Cow position:
               chr6:35990094-35990333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               71, 177
               

               Conread position:
               1097-1334
               

               Cow position:
               chr6:65264406-65264639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               209, 72
               

               Conread position:
               1097-1334
               

               Cow position:
               chr6:67187824-67187586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               30, 42
               

               Conread position:
               1097-1335
               

               Cow position:
               chr6:3592537-3592300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               105, 72
               

               Conread position:
               1097-1338
               

               Cow position:
               chr6:7119479-7119714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               131, 177
               

               Conread position:
               1097-1338
               

               Cow position:
               chr6:46465961-46465719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               1097-1338
               

               Cow position:
               chr6:60667550-60667314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 29
               

               Conread position:
               1097-1339
               

               Cow position:
               chr6:8787897-8788143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               131, 152
               

               Conread position:
               1097-1339
               

               Cow position:
               chr6:9750917-9751150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               123, 66
               

               Conread position:
               1097-1339
               

               Cow position:
               chr6:21111091-21110860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               209, 128
               

               Conread position:
               1097-1339
               

               Cow position:
               chr6:37149329-37149083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 243
               

               Conread position:
               1097-1339
               

               Cow position:
               chr6:66434091-66433838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               30, 64
               

               Conread position:
               1097-1339
               

               Cow position:
               chr6:66531682-66531926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               134, 57
               

               Conread position:
               1097-1340
               

               Cow position:
               chr6:36470422-36470674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               1097-1340
               

               Cow position:
               chr6:38771420-38771180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               145, 66
               

               Conread position:
               1097-1340
               

               Cow position:
               chr6:48112336-48112093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               137, 79
               

               Conread position:
               1097-1340
               

               Cow position:
               chr6:54867657-54867407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               1097-1340
               

               Cow position:
               chr6:62670005-62669765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               1097-1342
               

               Cow position:
               chr6:15937715-15937958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 118
               

               Conread position:
               1097-1344
               

               Cow position:
               chr6:14914096-14914355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               126, 97
               

               Conread position:
               1097-1344
               

               Cow position:
               chr6:35103188-35103445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               1097-1344
               

               Cow position:
               chr6:59603068-59603317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               121, 204
               

               Conread position:
               1097-1345
               

               Cow position:
               chr6:582133-582382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 63
               

               Conread position:
               1097-1345
               

               Cow position:
               chr6:14958200-14958456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               188
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               1097-1345
               

               Cow position:
               chr6:23696140-23695883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1097-1345
               

               Cow position:
               chr6:37783540-37783307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               130, 147
               

               Conread position:
               1097-1345
               

               Cow position:
               chr6:40774192-40774463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:4691836-4692092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               131, 21
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:10039863-10039609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:13367425-13367181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               126, 178
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:20097819-20098076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               26, 16
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:21231664-21231420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               126, 175
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:21590847-21590581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               132, 257
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:28976900-28977147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               126, 181
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:32268748-32268988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               209, 72
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:46282864-46283112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               127, 171
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:47355962-47355712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               131, 41
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:47799433-47799179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               1097-1346
               

               Cow position:
               chr6:54573399-54573131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               1097-1347
               

               Cow position:
               chr6:9026658-9026404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               134, 13
               

               Conread position:
               1097-1347
               

               Cow position:
               chr6:47305479-47305226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               8, 14
               

               Conread position:
               1097-1347
               

               Cow position:
               chr6:53652180-53651930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               145, 104
               

               Conread position:
               1097-1347
               

               Cow position:
               chr6:67214889-67214631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1097-1347
               

               Cow position:
               chr6:67951089-67950840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               133, 60
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:120385-120129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               139, 79
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:416265-415984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:1886527-1886778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               78, 94
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:5095402-5095668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               199
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:5302280-5302522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:5609307-5609554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               119, 100
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:7189979-7190233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               115, 231
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:8125466-8125214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:8209466-8209705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               210, 33
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:13040579-13040343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               210, 31
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:15242976-15242722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               194
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               99, 196
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:15243395-15243142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               117, 147
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:15300693-15300933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 66
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:15305708-15305467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               210, 65
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:16191811-16191555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               127, 48
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:16423841-16423589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               122, 41
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:19264359-19264610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               24, 12
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:19446390-19446145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               195
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               51, 67
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:19681385-19681637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               197
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               127, 188
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:19695946-19695691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               112, 74
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:21004816-21004554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               76, 160
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:21514468-21514733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:21736753-21736998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               129, 13
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:28483156-28482905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               57, 127
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:33302534-33302294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               209, 79
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:35993723-35993467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 13
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:36189837-36189583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               138, 74
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:38640373-38640117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:38641632-38641380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               126, 62
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:38853519-38853768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               178, 123
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:40032330-40032079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 81
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:43134799-43135058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               25, 13
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:47575046-47574791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:48803498-48803751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               7, 37
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:53460428-53460686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               123, 13
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:53841366-53841613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               210, 128
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:54490597-54490858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               123, 29
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:57546089-57546328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               132, 63
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:57571619-57571363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               122, 144
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:58597366-58597618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               137, 164
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:60350152-60350409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:60740154-60739901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:64432078-64431825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 206
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:67323449-67323202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               133, 142
               

               Conread position:
               1097-1348
               

               Cow position:
               chr6:67456858-67456599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               175, 122
               

               Conread position:
               1097-1349
               

               Cow position:
               chr6:21235183-21234929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 171
               

               Conread position:
               1097-1349
               

               Cow position:
               chr6:24781420-24781674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               128, 26
               

               Conread position:
               1097-1349
               

               Cow position:
               chr6:31526186-31525937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               103, 216
               

               Conread position:
               1097-1349
               

               Cow position:
               chr6:36202958-36202713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               127, 66
               

               Conread position:
               1097-1349
               

               Cow position:
               chr6:51835538-51835281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               134, 9
               

               Conread position:
               1097-1350
               

               Cow position:
               chr6:44078654-44078402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               130, 66
               

               Conread position:
               1097-1358
               

               Cow position:
               chr6:53138800-53139049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               87, 31
               

               Conread position:
               1097-1361
               

               Cow position:
               chr6:52478271-52478540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               127, 242
               

               Conread position:
               1097-1361
               

               Cow position:
               chr6:58370890-58370626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               204
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               137, 50
               

               Conread position:
               1097-1364
               

               Cow position:
               chr6:21061746-21062022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               127, 66
               

               Conread position:
               1097-1365
               

               Cow position:
               chr6:445463-445184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1097-1365
               

               Cow position:
               chr6:6098126-6098413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               109, 262
               

               Conread position:
               1097-1365
               

               Cow position:
               chr6:9008472-9008742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               1097-1365
               

               Cow position:
               chr6:65903485-65903748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               210, 21
               

               Conread position:
               1097-1365
               

               Cow position:
               chr6:66131446-66131172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               106, 79
               

               Conread position:
               1097-1366
               

               Cow position:
               chr6:11169842-11169573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               25, 78
               

               Conread position:
               1097-1366
               

               Cow position:
               chr6:18447378-18447641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               179, 63
               

               Conread position:
               1097-1370
               

               Cow position:
               chr6:53932707-53932984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               1097-1371
               

               Cow position:
               chr6:2547395-2547109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               118, 188
               

               Conread position:
               1097-1371
               

               Cow position:
               chr6:14838904-14839161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               211, 65
               

               Conread position:
               1097-1373
               

               Cow position:
               chr6:17997180-17997453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 79
               

               Conread position:
               1097-1375
               

               Cow position:
               chr6:21535179-21534914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               78, 151
               

               Conread position:
               1098-1312
               

               Cow position:
               chr6:33509925-33509712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               130, 63
               

               Conread position:
               1098-1312
               

               Cow position:
               chr6:58608305-58608517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               51, 133
               

               Conread position:
               1098-1325
               

               Cow position:
               chr6:35436133-35435904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               104, 114
               

               Conread position:
               1098-1334
               

               Cow position:
               chr6:52901377-52901134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               1098-1337
               

               Cow position:
               chr6:38614951-38614716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               130, 65
               

               Conread position:
               1098-1337
               

               Cow position:
               chr6:56850158-56849909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               1098-1339
               

               Cow position:
               chr6:62371042-62371286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               184, 65
               

               Conread position:
               1098-1341
               

               Cow position:
               chr6:54809249-54809499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               129, 78
               

               Conread position:
               1098-1342
               

               Cow position:
               chr6:61168894-61168667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               209, 117
               

               Conread position:
               1098-1344
               

               Cow position:
               chr6:24004675-24004433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               208, 125
               

               Conread position:
               1098-1346
               

               Cow position:
               chr6:35726235-35725983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               14, 124
               

               Conread position:
               1098-1348
               

               Cow position:
               chr6:12845514-12845265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               197
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               149, 43
               

               Conread position:
               1098-1348
               

               Cow position:
               chr6:41733771-41733511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               62, 161
               

               Conread position:
               1098-1348
               

               Cow position:
               chr6:42961224-42961477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               29, 35
               

               Conread position:
               1098-1348
               

               Cow position:
               chr6:45596395-45596652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               127, 29
               

               Conread position:
               1098-1348
               

               Cow position:
               chr6:54990862-54991114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               110, 231
               

               Conread position:
               1098-1348
               

               Cow position:
               chr6:55282154-55282400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               38, 129
               

               Conread position:
               1098-1348
               

               Cow position:
               chr6:60442546-60442304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               111, 31
               

               Conread position:
               1098-1349
               

               Cow position:
               chr6:14949342-14949594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               51, 66
               

               Conread position:
               1098-1362
               

               Cow position:
               chr6:53674002-53673730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               132, 35
               

               Conread position:
               1098-1372
               

               Cow position:
               chr6:2582998-2582737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               5, 13
               

               Conread position:
               1099-1337
               

               Cow position:
               chr6:34475423-34475655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               207, 102
               

               Conread position:
               1099-1347
               

               Cow position:
               chr6:47339218-47339465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 154
               

               Conread position:
               1099-1348
               

               Cow position:
               chr6:23401855-23402103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1099-1349
               

               Cow position:
               chr6:32126193-32125956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               1100-1242
               

               Cow position:
               chr6:60451564-60451424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               1100-1301
               

               Cow position:
               chr6:12964989-12964788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               27, 32
               

               Conread position:
               1100-1311
               

               Cow position:
               chr6:33929410-33929626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               1100-1346
               

               Cow position:
               chr6:15447061-15447316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1101-1348
               

               Cow position:
               chr6:27110733-27110479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               131, 82
               

               Conread position:
               1102-1348
               

               Cow position:
               chr6:7989280-7989526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               92, 74
               

               Conread position:
               1103-1346
               

               Cow position:
               chr6:528150-528385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               1103-1348
               

               Cow position:
               chr6:55475389-55475132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               1103-1348
               

               Cow position:
               chr6:60057521-60057770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 180
               

               Conread position:
               1106-1346
               

               Cow position:
               chr6:66874482-66874239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               114, 87
               

               Conread position:
               1107-1333
               

               Cow position:
               chr6:51675039-51674812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               200, 73
               

               Conread position:
               1107-1347
               

               Cow position:
               chr6:25008851-25008601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               13, 158
               

               Conread position:
               1109-1346
               

               Cow position:
               chr6:61608640-61608399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               1109-1348
               

               Cow position:
               chr6:8966225-8965979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               102, 204
               

               Conread position:
               1109-1348
               

               Cow position:
               chr6:58074176-58073934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               111, 67
               

               Conread position:
               1110-1280
               

               Cow position:
               chr6:55417401-55417572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               1110-1291
               

               Cow position:
               chr6:2585069-2584885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               1110-1310
               

               Cow position:
               chr6:16287934-16288127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               1110-1312
               

               Cow position:
               chr6:4468895-4468690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               1110-1312
               

               Cow position:
               chr6:5330539-5330337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               120, 169
               

               Conread position:
               1110-1312
               

               Cow position:
               chr6:46558184-46557976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               17, 22
               

               Conread position:
               1110-1339
               

               Cow position:
               chr6:31564211-31564443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               118, 47
               

               Conread position:
               1110-1340
               

               Cow position:
               chr6:36645512-36645282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               110, 65
               

               Conread position:
               1110-1343
               

               Cow position:
               chr6:26043865-26043643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               100, 47
               

               Conread position:
               1110-1343
               

               Cow position:
               chr6:51969203-51968954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               117, 66
               

               Conread position:
               1110-1347
               

               Cow position:
               chr6:31635557-31635802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               36, 53
               

               Conread position:
               1110-1348
               

               Cow position:
               chr6:38207363-38207605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 102
               

               Conread position:
               1110-1348
               

               Cow position:
               chr6:54368777-54369014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               197, 115
               

               Conread position:
               1110-1348
               

               Cow position:
               chr6:63197036-63197282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               112, 208
               

               Conread position:
               1110-1348
               

               Cow position:
               chr6:65871163-65870914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               111, 28
               

               Conread position:
               1110-1365
               

               Cow position:
               chr6:64449505-64449258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               14, 39
               

               Conread position:
               1110-1394
               

               Cow position:
               chr6:28156036-28156306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               196, 47
               

               Conread position:
               1113-1308
               

               Cow position:
               chr6:36284367-36284169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               1113-1334
               

               Cow position:
               chr6:377249-377029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               50, 107
               

               Conread position:
               1113-1340
               

               Cow position:
               chr6:18988332-18988107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               14, 19
               

               Conread position:
               1113-1340
               

               Cow position:
               chr6:34251176-34251397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               193, 22
               

               Conread position:
               1113-1346
               

               Cow position:
               chr6:10695984-10695759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               193, 25
               

               Conread position:
               1113-1346
               

               Cow position:
               chr6:55763977-55763742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               68, 76
               

               Conread position:
               1113-1347
               

               Cow position:
               chr6:28477292-28477065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               147, 44
               

               Conread position:
               1113-1348
               

               Cow position:
               chr6:18048900-18049144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               107, 127
               

               Conread position:
               1113-1348
               

               Cow position:
               chr6:28083898-28084125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               178, 50
               

               Conread position:
               1113-1348
               

               Cow position:
               chr6:37199411-37199649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               122, 34
               

               Conread position:
               1113-1348
               

               Cow position:
               chr6:38610092-38609854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               116, 126
               

               Conread position:
               1113-1348
               

               Cow position:
               chr6:46865468-46865707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               193, 127
               

               Conread position:
               1113-1374
               

               Cow position:
               chr6:60118274-60118006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               199
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               107, 133
               

               Conread position:
               1114-1346
               

               Cow position:
               chr6:57164552-57164314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1114-1366
               

               Cow position:
               chr6:59104725-59104476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               40, 139
               

               Conread position:
               1115-1373
               

               Cow position:
               chr6:63047714-63047438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               1117-1340
               

               Cow position:
               chr6:28148376-28148142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               64, 214
               

               Conread position:
               1118-1372
               

               Cow position:
               chr6:46173140-46173394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               189, 65
               

               Conread position:
               1119-1298
               

               Cow position:
               chr6:5845053-5845235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               1119-1313
               

               Cow position:
               chr6:22985737-22985936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               1119-1316
               

               Cow position:
               chr6:54600466-54600264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1325
               

               Cow position:
               chr6:62929613-62929405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1334
               

               Cow position:
               chr6:16261896-16261683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               188, 93
               

               Conread position:
               1119-1340
               

               Cow position:
               chr6:54365210-54365437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               1119-1345
               

               Cow position:
               chr6:17333935-17334167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr6:10331983-10332204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr6:17704949-17704707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr6:48187461-48187694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               37, 115
               

               Conread position:
               1119-1346
               

               Cow position:
               chr6:52412977-52412746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1346
               

               Cow position:
               chr6:61113885-61113642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1119-1347
               

               Cow position:
               chr6:22850137-22850358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               187, 104
               

               Conread position:
               1119-1348
               

               Cow position:
               chr6:2607724-2607502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               1119-1349
               

               Cow position:
               chr6:26915446-26915214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               1119-1365
               

               Cow position:
               chr6:1770080-1770326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               1120-1299
               

               Cow position:
               chr6:60468355-60468173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               1120-1334
               

               Cow position:
               chr6:61269429-61269209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               1120-1337
               

               Cow position:
               chr6:21869532-21869751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               96, 155
               

               Conread position:
               1120-1344
               

               Cow position:
               chr6:30974159-30973942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               1120-1346
               

               Cow position:
               chr6:56843271-56843044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               88, 43
               

               Conread position:
               1120-1348
               

               Cow position:
               chr6:899176-899404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               187, 98
               

               Conread position:
               1120-1348
               

               Cow position:
               chr6:23247849-23248073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               104, 44
               

               Conread position:
               1120-1348
               

               Cow position:
               chr6:24468279-24468507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               185, 92
               

               Conread position:
               1120-1348
               

               Cow position:
               chr6:28079797-28080013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               167, 63
               

               Conread position:
               1120-1348
               

               Cow position:
               chr6:28318514-28318293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               64, 43
               

               Conread position:
               1120-1348
               

               Cow position:
               chr6:31535452-31535681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               115, 177
               

               Conread position:
               1120-1348
               

               Cow position:
               chr6:36196327-36196100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               187, 152
               

               Conread position:
               1120-1365
               

               Cow position:
               chr6:48572763-48573010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               57, 48
               

               Conread position:
               1121-1340
               

               Cow position:
               chr6:19996730-19996512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               108, 65
               

               Conread position:
               1121-1348
               

               Cow position:
               chr6:130047-130275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               108, 55
               

               Conread position:
               1121-1365
               

               Cow position:
               chr6:25407275-25407523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               31, 121
               

               Conread position:
               1122-1334
               

               Cow position:
               chr6:27239891-27240106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               1122-1348
               

               Cow position:
               chr6:44194434-44194656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               103, 122
               

               Conread position:
               1123-1338
               

               Cow position:
               chr6:4383593-4383382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               184, 74
               

               Conread position:
               1123-1339
               

               Cow position:
               chr6:28148950-28148734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               27, 186
               

               Conread position:
               1123-1348
               

               Cow position:
               chr6:63251809-63252037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               101, 115
               

               Conread position:
               1123-1349
               

               Cow position:
               chr6:52248016-52248246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               25, 123
               

               Conread position:
               1123-1367
               

               Cow position:
               chr6:26172791-26173040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               20, 5
               

               Conread position:
               1124-1349
               

               Cow position:
               chr6:56350287-56350060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               20, 41
               

               Conread position:
               1126-1349
               

               Cow position:
               chr6:55040104-55040327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               30, 5
               

               Conread position:
               1127-1349
               

               Cow position:
               chr6:24934516-24934741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               96, 202
               

               Conread position:
               1128-1317
               

               Cow position:
               chr6:28283970-28283783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               178, 101
               

               Conread position:
               1128-1334
               

               Cow position:
               chr6:6063185-6063391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               179, 95
               

               Conread position:
               1128-1348
               

               Cow position:
               chr6:10399801-10400015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               100, 41
               

               Conread position:
               1129-1345
               

               Cow position:
               chr6:19401958-19401745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               40, 97
               

               Conread position:
               1130-1317
               

               Cow position:
               chr6:40050182-40049985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1130-1339
               

               Cow position:
               chr6:40713396-40713606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               184, 95
               

               Conread position:
               1130-1346
               

               Cow position:
               chr6:3929425-3929206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               99, 24
               

               Conread position:
               1130-1348
               

               Cow position:
               chr6:1703907-1703704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               176, 38
               

               Conread position:
               1130-1348
               

               Cow position:
               chr6:12338100-12337870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               179
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               1130-1348
               

               Cow position:
               chr6:17313842-17313620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               90, 125
               

               Conread position:
               1130-1348
               

               Cow position:
               chr6:54140904-54140694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               47, 134
               

               Conread position:
               1131-1302
               

               Cow position:
               chr6:6724611-6724436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               100, 29
               

               Conread position:
               1131-1304
               

               Cow position:
               chr6:581642-581813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               1131-1308
               

               Cow position:
               chr6:23353656-23353480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1131-1324
               

               Cow position:
               chr6:60673671-60673479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               100, 44
               

               Conread position:
               1131-1325
               

               Cow position:
               chr6:3595897-3595697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               104, 126
               

               Conread position:
               1131-1337
               

               Cow position:
               chr6:59798753-59798554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               100, 38
               

               Conread position:
               1131-1340
               

               Cow position:
               chr6:1371120-1371336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               1131-1342
               

               Cow position:
               chr6:16266830-16266611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               1131-1344
               

               Cow position:
               chr6:17557487-17557271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               1131-1345
               

               Cow position:
               chr6:54036037-54036246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               92, 66
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:7103135-7103344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               176, 89
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:31814643-31814849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:48282098-48281884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               175, 103
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:48567246-48567457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               96, 77
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:48988536-48988325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               176, 100
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:50467241-50467023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               120, 99
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:54430936-54430711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:55161576-55161353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:55209663-55209444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               81, 33
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:60819619-60819403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               175, 109
               

               Conread position:
               1131-1346
               

               Cow position:
               chr6:60859195-60859414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               86, 58
               

               Conread position:
               1131-1348
               

               Cow position:
               chr6:7128297-7128514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               97, 181
               

               Conread position:
               1131-1348
               

               Cow position:
               chr6:16700367-16700145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               174
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               169, 92
               

               Conread position:
               1131-1348
               

               Cow position:
               chr6:20206381-20206162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               175, 199
               

               Conread position:
               1131-1348
               

               Cow position:
               chr6:22502805-22503033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               93, 107
               

               Conread position:
               1131-1348
               

               Cow position:
               chr6:45388431-45388216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               68, 11
               

               Conread position:
               1131-1348
               

               Cow position:
               chr6:53401462-53401250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               44, 7
               

               Conread position:
               1131-1348
               

               Cow position:
               chr6:54864555-54864785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               88, 32
               

               Conread position:
               1131-1348
               

               Cow position:
               chr6:61631503-61631723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               1131-1348
               

               Cow position:
               chr6:63272505-63272724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               97, 148
               

               Conread position:
               1131-1349
               

               Cow position:
               chr6:77810-78023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               175, 94
               

               Conread position:
               1131-1349
               

               Cow position:
               chr6:561733-561507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               1131-1349
               

               Cow position:
               chr6:16746449-16746225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               1131-1349
               

               Cow position:
               chr6:16765290-16765512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               91, 135
               

               Conread position:
               1131-1349
               

               Cow position:
               chr6:22332292-22332507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               175, 93
               

               Conread position:
               1131-1349
               

               Cow position:
               chr6:29240045-29239824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               93, 24
               

               Conread position:
               1131-1349
               

               Cow position:
               chr6:60850274-60850501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               1131-1349
               

               Cow position:
               chr6:67617842-67618070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               62, 214
               

               Conread position:
               1131-1365
               

               Cow position:
               chr6:50747103-50746853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               81, 21
               

               Conread position:
               1132-1305
               

               Cow position:
               chr6:68366412-68366584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               103, 140
               

               Conread position:
               1132-1365
               

               Cow position:
               chr6:20157438-20157198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               1133-1346
               

               Cow position:
               chr6:21399652-21399865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               100, 123
               

               Conread position:
               1133-1347
               

               Cow position:
               chr6:12652312-12652093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               1133-1348
               

               Cow position:
               chr6:12542827-12543047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               91, 7
               

               Conread position:
               1133-1374
               

               Cow position:
               chr6:54208031-54208274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               75, 85
               

               Conread position:
               1133-1378
               

               Cow position:
               chr6:61515084-61515341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               76, 244
               

               Conread position:
               1135-1334
               

               Cow position:
               chr6:48170040-48169844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               172, 90
               

               Conread position:
               1136-1349
               

               Cow position:
               chr6:4559204-4559420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               90, 44
               

               Conread position:
               1137-1349
               

               Cow position:
               chr6:27851605-27851822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               42, 67
               

               Conread position:
               1137-1349
               

               Cow position:
               chr6:46292248-46292459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               92, 50
               

               Conread position:
               1138-1349
               

               Cow position:
               chr6:32287738-32287523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               1140-1312
               

               Cow position:
               chr6:54364895-54365080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1140-1336
               

               Cow position:
               chr6:62924899-62925099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               158
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1140-1366
               

               Cow position:
               chr6:32676985-32677212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               99, 80
               

               Conread position:
               1142-1348
               

               Cow position:
               chr6:6994856-6995064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               77, 154
               

               Conread position:
               1144-1349
               

               Cow position:
               chr6:8804438-8804645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               164
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               85, 25
               

               Conread position:
               1147-1302
               

               Cow position:
               chr6:26764928-26765081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               73, 22
               

               Conread position:
               1147-1346
               

               Cow position:
               chr6:59109035-59108829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               1147-1348
               

               Cow position:
               chr6:607353-607152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               51, 109
               

               Conread position:
               1147-1348
               

               Cow position:
               chr6:12829135-12829336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               69, 106
               

               Conread position:
               1147-1348
               

               Cow position:
               chr6:57405035-57405243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               1147-1349
               

               Cow position:
               chr6:242891-242693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               159, 15
               

               Conread position:
               1148-1346
               

               Cow position:
               chr6:25359151-25358963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               151, 75
               

               Conread position:
               1148-1348
               

               Cow position:
               chr6:11192375-11192580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               1148-1365
               

               Cow position:
               chr6:34076120-34075887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               1151-1346
               

               Cow position:
               chr6:44127697-44127494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               1151-1348
               

               Cow position:
               chr6:18961431-18961630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               78, 9
               

               Conread position:
               1152-1348
               

               Cow position:
               chr6:44099171-44098970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               75, 15
               

               Conread position:
               1153-1342
               

               Cow position:
               chr6:14850630-14850825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               42, 27
               

               Conread position:
               1153-1348
               

               Cow position:
               chr6:44984417-44984215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               1157-1348
               

               Cow position:
               chr6:21542403-21542206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               63, 89
               

               Conread position:
               1160-1309
               

               Cow position:
               chr6:40761202-40761050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               1161-1356
               

               Cow position:
               chr6:46998063-46998268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1161-1365
               

               Cow position:
               chr6:68049507-68049304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               66, 91
               

               Conread position:
               1163-1344
               

               Cow position:
               chr6:6673176-6672992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               143, 164
               

               Conread position:
               1163-1348
               

               Cow position:
               chr6:60239320-60239503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               9, 78
               

               Conread position:
               1164-1348
               

               Cow position:
               chr6:50445695-50445877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               142, 12
               

               Conread position:
               1165-1347
               

               Cow position:
               chr6:59297070-59296886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               142, 37
               

               Conread position:
               1165-1348
               

               Cow position:
               chr6:5413894-5413705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1167-1348
               

               Cow position:
               chr6:9219342-9219159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1169-1348
               

               Cow position:
               chr6:61137443-61137261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               1171-1305
               

               Cow position:
               chr6:30688549-30688682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               55, 121
               

               Conread position:
               1171-1334
               

               Cow position:
               chr6:12545788-12545957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               16, 74
               

               Conread position:
               1171-1346
               

               Cow position:
               chr6:36928727-36928543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               1171-1346
               

               Cow position:
               chr6:47989238-47989076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               135, 65
               

               Conread position:
               1171-1348
               

               Cow position:
               chr6:57299081-57298902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               56, 69
               

               Conread position:
               1171-1349
               

               Cow position:
               chr6:38234025-38233845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               59, 170
               

               Conread position:
               1171-1365
               

               Cow position:
               chr6:49694445-49694248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               135, 162
               

               Conread position:
               1173-1348
               

               Cow position:
               chr6:642504-642687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               63, 10
               

               Conread position:
               1173-1349
               

               Cow position:
               chr6:49685648-49685470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               51, 10
               

               Conread position:
               1175-1348
               

               Cow position:
               chr6:40834406-40834583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1176-1333
               

               Cow position:
               chr6:16411252-16411091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1176-1346
               

               Cow position:
               chr6:54294163-54293995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               130, 49
               

               Conread position:
               1176-1348
               

               Cow position:
               chr6:54288135-54287958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               5, 67
               

               Conread position:
               1178-1347
               

               Cow position:
               chr6:56848856-56849030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               1179-1348
               

               Cow position:
               chr6:12630079-12629910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               128, 50
               

               Conread position:
               1179-1348
               

               Cow position:
               chr6:53731582-53731407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               1183-1342
               

               Cow position:
               chr6:21052453-21052617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               46, 60
               

               Conread position:
               1183-1349
               

               Cow position:
               chr6:57504818-57504650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               27, 154
               

               Conread position:
               1183-1373
               

               Cow position:
               chr6:53711169-53710978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               47, 183
               

               Conread position:
               1184-1340
               

               Cow position:
               chr6:49604729-49604572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               36, 23
               

               Conread position:
               1184-1340
               

               Cow position:
               chr6:62479107-62479271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               1184-1347
               

               Cow position:
               chr6:62325045-62324878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1184-1348
               

               Cow position:
               chr6:33150355-33150520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               43, 58
               

               Conread position:
               1184-1348
               

               Cow position:
               chr6:46206066-46205896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               43, 56
               

               Conread position:
               1184-1348
               

               Cow position:
               chr6:67304858-67304691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               44, 118
               

               Conread position:
               1184-1349
               

               Cow position:
               chr6:633304-633472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               1184-1349
               

               Cow position:
               chr6:5957975-5958134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               123, 88
               

               Conread position:
               1184-1365
               

               Cow position:
               chr6:45160245-45160423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               122, 36
               

               Conread position:
               1184-1365
               

               Cow position:
               chr6:58076283-58076093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               46, 78
               

               Conread position:
               1184-1366
               

               Cow position:
               chr6:16738072-16737888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               1187-1339
               

               Cow position:
               chr6:20230776-20230936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               1187-1348
               

               Cow position:
               chr6:8187470-8187629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               119, 88
               

               Conread position:
               1187-1348
               

               Cow position:
               chr6:19351106-19351268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               42, 25
               

               Conread position:
               1187-1349
               

               Cow position:
               chr6:47540583-47540416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               12, 104
               

               Conread position:
               1187-1365
               

               Cow position:
               chr6:65904225-65904399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               120, 55
               

               Conread position:
               1188-1345
               

               Cow position:
               chr6:6470592-6470750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               46, 66
               

               Conread position:
               1191-1349
               

               Cow position:
               chr6:357840-358005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               1192-1340
               

               Cow position:
               chr6:2423790-2423634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               33, 88
               

               Conread position:
               1194-1324
               

               Cow position:
               chr6:21559468-21559598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               112, 26
               

               Conread position:
               1194-1340
               

               Cow position:
               chr6:29266247-29266096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1194-1348
               

               Cow position:
               chr6:24515155-24515307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               37, 73
               

               Conread position:
               1194-1348
               

               Cow position:
               chr6:48344376-48344218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               1196-1348
               

               Cow position:
               chr6:18968739-18968893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               30, 124
               

               Conread position:
               1198-1346
               

               Cow position:
               chr6:44757072-44756930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               109, 26
               

               Conread position:
               1208-1348
               

               Cow position:
               chr6:30826002-30826146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               1208-1349
               

               Cow position:
               chr6:54647492-54647637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               1218-1337
               

               Cow position:
               chr6:603108-602988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               78, 43
               

               Conread position:
               1218-1346
               

               Cow position:
               chr6:58363993-58364123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               1218-1348
               

               Cow position:
               chr6:8318146-8318278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               1223-1344
               

               Cow position:
               chr6:61644819-61644945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               5, 122
               

               Conread position:
               1223-1348
               

               Cow position:
               chr6:40264188-40264315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               1223-1349
               

               Cow position:
               chr6:30786143-30786269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               79, 83
               

               Conread position:
               1227-1338
               

               Cow position:
               chr6:14153114-14153224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               96
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               80, 17
               

               Conread position:
               1227-1346
               

               Cow position:
               chr6:33277050-33276929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               1228-1339
               

               Cow position:
               chr6:46400404-46400517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               1228-1349
               

               Cow position:
               chr6:61130470-61130593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               1229-1346
               

               Cow position:
               chr6:2013025-2012907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               1229-1365
               

               Cow position:
               chr6:389180-389039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               1232-1348
               

               Cow position:
               chr6:32210625-32210742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               1232-1348
               

               Cow position:
               chr6:61575612-61575493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               1236-1348
               

               Cow position:
               chr6:66453798-66453686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               71, 26
               

               Conread position:
               1237-1365
               

               Cow position:
               chr6:39994463-39994588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               70, 55
               

               Conread position:
               1242-1346
               

               Cow position:
               chr6:35471526-35471631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               92
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               65, 0
               
Show alignments to all cow chromosomes.
Conread position:	1038-1289
Cow position:	chr6:16352143-16352401 (view UCSC Genome Browser custom track)
Alignm length:	265
Alignm identity:	190
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	53, 22
Conread position:	1053-1365
Cow position:	chr6:27815289-27815600 (view UCSC Genome Browser custom track)
Alignm length:	325
Alignm identity:	227
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	99, 9
Conread position:	1057-1278
Cow position:	chr6:36454412-36454634 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	154
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	34, 148
Conread position:	1057-1284
Cow position:	chr6:51294469-51294234 (view UCSC Genome Browser custom track)
Alignm length:	237
Alignm identity:	161
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	33, 89
Conread position:	1057-1320
Cow position:	chr6:37463207-37462936 (view UCSC Genome Browser custom track)
Alignm length:	276
Alignm identity:	201
Alignm E-value:	7e-39
Alignm gaps (pig, cow):	36, 223
Conread position:	1057-1326
Cow position:	chr6:10487763-10487495 (view UCSC Genome Browser custom track)
Alignm length:	274
Alignm identity:	190
Alignm E-value:	4e-33
Alignm gaps (pig, cow):	163, 31
Conread position:	1057-1339
Cow position:	chr6:4864371-4864653 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	215
Alignm E-value:	0
Alignm gaps (pig, cow):	163, 30
Conread position:	1057-1346
Cow position:	chr6:56376166-56376464 (view UCSC Genome Browser custom track)
Alignm length:	300
Alignm identity:	201
Alignm E-value:	8e-30
Alignm gaps (pig, cow):	32, 84
Conread position:	1057-1348
Cow position:	chr6:12501034-12500750 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	221
Alignm E-value:	9e-31
Alignm gaps (pig, cow):	29, 138
Conread position:	1057-1349
Cow position:	chr6:36652601-36652304 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	208
Alignm E-value:	3.00004e-41
Alignm gaps (pig, cow):	176, 26
Conread position:	1057-1358
Cow position:	chr6:20196124-20196416 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	219
Alignm E-value:	0
Alignm gaps (pig, cow):	171, 40
Conread position:	1057-1365
Cow position:	chr6:17090783-17090468 (view UCSC Genome Browser custom track)
Alignm length:	318
Alignm identity:	219
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	36, 127
Conread position:	1057-1369
Cow position:	chr6:45064833-45065149 (view UCSC Genome Browser custom track)
Alignm length:	318
Alignm identity:	231
Alignm E-value:	0
Alignm gaps (pig, cow):	27, 241
Conread position:	1060-1280
Cow position:	chr6:47305973-47306183 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	155
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	46, 0
Conread position:	1060-1339
Cow position:	chr6:29210676-29210394 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	191
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	54, 134
Conread position:	1064-1348
Cow position:	chr6:34195967-34196264 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	227
Alignm E-value:	0
Alignm gaps (pig, cow):	30, 0
Conread position:	1065-1275
Cow position:	chr6:44623782-44623567 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	154
Alignm E-value:	7e-28
Alignm gaps (pig, cow):	23, 11
Conread position:	1065-1348
Cow position:	chr6:16626126-16625833 (view UCSC Genome Browser custom track)
Alignm length:	300
Alignm identity:	200
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	25, 207
Conread position:	1069-1340
Cow position:	chr6:28999767-29000031 (view UCSC Genome Browser custom track)
Alignm length:	279
Alignm identity:	188
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	38, 153
Conread position:	1070-1349
Cow position:	chr6:54936749-54936463 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	190
Alignm E-value:	8e-30
Alignm gaps (pig, cow):	26, 0