Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 267-649 |
| Cow position: | chr1:58365558-58365193 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 24 |
| Conread position: | 276-628 |
| Cow position: | chr1:23974452-23974097 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 283-649 |
| Cow position: | chr1:29123798-29124164 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 285-664 |
| Cow position: | chr1:71220047-71220432 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 81, 35 |
| Conread position: | 298-640 |
| Cow position: | chr1:61677448-61677103 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 298-660 |
| Cow position: | chr1:58262111-58261755 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 303-691 |
| Cow position: | chr1:37321331-37321708 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 306-657 |
| Cow position: | chr1:34261584-34261929 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 105, 48 |
| Conread position: | 309-661 |
| Cow position: | chr1:100469577-100469929 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 310-661 |
| Cow position: | chr1:40411083-40411426 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 343-647 |
| Cow position: | chr1:75153798-75153481 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 410-660 |
| Cow position: | chr1:58453655-58453918 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 410-661 |
| Cow position: | chr1:97515012-97514752 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 411-649 |
| Cow position: | chr1:71782121-71782359 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 412-649 |
| Cow position: | chr1:96270741-96270492 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 413-634 |
| Cow position: | chr1:27966743-27966520 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 417-616 |
| Cow position: | chr1:52114452-52114246 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 417-661 |
| Cow position: | chr1:559032-559285 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 464-634 |
| Cow position: | chr1:81864403-81864574 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 468-660 |
| Cow position: | chr1:25802836-25802644 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 469-649 |
| Cow position: | chr1:81308433-81308253 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 469-661 |
| Cow position: | chr1:17691000-17690806 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 469-665 |
| Cow position: | chr1:64890661-64890463 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 470-664 |
| Cow position: | chr1:64849048-64848861 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 145, 27 |
| Conread position: | 477-641 |
| Cow position: | chr1:41720897-41720738 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 477-661 |
| Cow position: | chr1:87456888-87456704 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 478-644 |
| Cow position: | chr1:37761312-37761481 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 478-651 |
| Cow position: | chr1:63486638-63486466 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 479-661 |
| Cow position: | chr1:94397800-94397619 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 505-659 |
| Cow position: | chr1:96307835-96307683 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 150, 54 |
| Conread position: | 505-661 |
| Cow position: | chr1:69326392-69326231 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 506-661 |
| Cow position: | chr1:81664322-81664481 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 507-659 |
| Cow position: | chr1:12019996-12020152 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 508-644 |
| Cow position: | chr1:44679021-44678883 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 54, 83 |
| Conread position: | 509-664 |
| Cow position: | chr1:94934957-94934800 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 510-661 |
| Cow position: | chr1:51842297-51842451 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 510-669 |
| Cow position: | chr1:37507362-37507524 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 511-687 |
| Cow position: | chr1:48111435-48111254 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 512-664 |
| Cow position: | chr1:41250765-41250920 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 512-688 |
| Cow position: | chr1:30098223-30098401 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 517-661 |
| Cow position: | chr1:31852409-31852264 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 136 |
| Conread position: | 698-869 |
| Cow position: | chr1:45979244-45979076 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 704-853 |
| Cow position: | chr1:2203758-2203906 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 704-876 |
| Cow position: | chr1:63134511-63134339 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 705-859 |
| Cow position: | chr1:78885264-78885415 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 705-864 |
| Cow position: | chr1:11878584-11878746 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 706-868 |
| Cow position: | chr1:23510196-23510359 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 723-864 |
| Cow position: | chr1:65155194-65155337 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 730-858 |
| Cow position: | chr1:64098707-64098837 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 730-864 |
| Cow position: | chr1:3746674-3746542 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.