Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 250-661 |
| Cow position: | chr11:50871005-50871424 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 99, 41 |
| Conread position: | 262-644 |
| Cow position: | chr11:29327927-29328326 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 273-648 |
| Cow position: | chr11:29655933-29655560 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 273-649 |
| Cow position: | chr11:8111797-8112172 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 25, 54 |
| Conread position: | 281-661 |
| Cow position: | chr11:11680998-11681385 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 282-661 |
| Cow position: | chr11:72982930-72982540 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 283-661 |
| Cow position: | chr11:76496650-76497035 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 285-648 |
| Cow position: | chr11:56297007-56296638 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 288-649 |
| Cow position: | chr11:34634645-34635006 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 292-644 |
| Cow position: | chr11:23404214-23403868 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 294-661 |
| Cow position: | chr11:27805552-27805937 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 298-624 |
| Cow position: | chr11:76359205-76358885 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 298-649 |
| Cow position: | chr11:10146788-10147148 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 298-649 |
| Cow position: | chr11:67235022-67235379 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 149, 26 |
| Conread position: | 298-660 |
| Cow position: | chr11:6373870-6373509 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 298-733 |
| Cow position: | chr11:41604052-41604489 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 300-814 |
| Cow position: | chr11:43306275-43306775 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 338 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 303-644 |
| Cow position: | chr11:46222204-46221859 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 306-661 |
| Cow position: | chr11:78361466-78361806 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 316-634 |
| Cow position: | chr11:20495818-20496143 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 316-718 |
| Cow position: | chr11:15406342-15406739 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 318-648 |
| Cow position: | chr11:75885692-75885364 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 375-661 |
| Cow position: | chr11:50824528-50824235 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 399-649 |
| Cow position: | chr11:73194600-73194336 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 6 |
| Conread position: | 400-665 |
| Cow position: | chr11:75013469-75013213 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 406-649 |
| Cow position: | chr11:2950175-2950428 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 217 |
| Conread position: | 413-649 |
| Cow position: | chr11:39474051-39473813 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 413-649 |
| Cow position: | chr11:62872787-62873030 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 467-687 |
| Cow position: | chr11:50718736-50718515 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 468-649 |
| Cow position: | chr11:22883111-22882929 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 468-661 |
| Cow position: | chr11:17150696-17150889 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 468-661 |
| Cow position: | chr11:21520531-21520337 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 103, 40 |
| Conread position: | 468-661 |
| Cow position: | chr11:23909393-23909201 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 40 |
| Conread position: | 468-664 |
| Cow position: | chr11:41097611-41097798 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 187, 40 |
| Conread position: | 470-647 |
| Cow position: | chr11:72409000-72409179 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 476-647 |
| Cow position: | chr11:71033516-71033688 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 476-661 |
| Cow position: | chr11:38798181-38797996 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 476-664 |
| Cow position: | chr11:58418145-58418335 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 477-634 |
| Cow position: | chr11:76964986-76965144 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 477-644 |
| Cow position: | chr11:34409245-34409409 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 27 |
| Conread position: | 477-649 |
| Cow position: | chr11:74849426-74849258 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 477-661 |
| Cow position: | chr11:78132100-78132286 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 31 |
| Conread position: | 478-649 |
| Cow position: | chr11:72871341-72871170 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 478-661 |
| Cow position: | chr11:36237560-36237744 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 478-661 |
| Cow position: | chr11:50877067-50876882 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 479-661 |
| Cow position: | chr11:1559193-1559012 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 479-661 |
| Cow position: | chr11:62201811-62201996 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 479-688 |
| Cow position: | chr11:55487731-55487519 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 481-661 |
| Cow position: | chr11:54126495-54126676 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 80, 27 |
| Conread position: | 483-661 |
| Cow position: | chr11:65755515-65755695 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 508-649 |
| Cow position: | chr11:15681032-15681175 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 508-661 |
| Cow position: | chr11:21017984-21017829 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 111 |
| Conread position: | 510-648 |
| Cow position: | chr11:66016738-66016598 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 511-649 |
| Cow position: | chr11:4740946-4740805 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 512-648 |
| Cow position: | chr11:20835445-20835307 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 512-649 |
| Cow position: | chr11:31893738-31893599 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 512-661 |
| Cow position: | chr11:2379864-2379713 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 512-661 |
| Cow position: | chr11:49983005-49982853 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 512-675 |
| Cow position: | chr11:8231512-8231347 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 51, 73 |
| Conread position: | 516-686 |
| Cow position: | chr11:54364538-54364712 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 152 |
| Conread position: | 528-688 |
| Cow position: | chr11:23972934-23973097 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 45, 141 |
| Conread position: | 700-870 |
| Cow position: | chr11:3261296-3261129 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 704-864 |
| Cow position: | chr11:16363809-16363968 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 24 |
| Conread position: | 705-876 |
| Cow position: | chr11:54204243-54204416 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 730-864 |
| Cow position: | chr11:21909574-21909709 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 730-864 |
| Cow position: | chr11:25807177-25807312 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 730-864 |
| Cow position: | chr11:34398039-34397905 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 748-864 |
| Cow position: | chr11:10877793-10877679 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.