Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 234-649 |
| Cow position: | chr12:7211932-7212345 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 262-661 |
| Cow position: | chr12:7399157-7398749 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 263-649 |
| Cow position: | chr12:14745255-14745630 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 219, 28 |
| Conread position: | 282-661 |
| Cow position: | chr12:25532157-25531770 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 283-644 |
| Cow position: | chr12:15473220-15472867 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 89, 15 |
| Conread position: | 285-649 |
| Cow position: | chr12:7325491-7325862 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 68, 34 |
| Conread position: | 298-649 |
| Cow position: | chr12:22213339-22213696 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 298-660 |
| Cow position: | chr12:40284483-40284110 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 298-664 |
| Cow position: | chr12:37798032-37797669 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 303-649 |
| Cow position: | chr12:7262178-7262519 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 316-665 |
| Cow position: | chr12:18002827-18003189 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 318-665 |
| Cow position: | chr12:40248708-40248348 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 343-660 |
| Cow position: | chr12:5901840-5901512 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 410-661 |
| Cow position: | chr12:40648338-40648088 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 414-657 |
| Cow position: | chr12:20214199-20213957 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 87 |
| Conread position: | 417-661 |
| Cow position: | chr12:40435205-40435456 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 420-664 |
| Cow position: | chr12:10930494-10930239 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 475-661 |
| Cow position: | chr12:29694548-29694733 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 87, 144 |
| Conread position: | 493-676 |
| Cow position: | chr12:21186446-21186633 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 497-661 |
| Cow position: | chr12:28841853-28841690 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 53 |
| Conread position: | 506-661 |
| Cow position: | chr12:7169938-7170096 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 61 |
| Conread position: | 508-648 |
| Cow position: | chr12:8168660-8168519 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 98 |
| Conread position: | 508-661 |
| Cow position: | chr12:26294833-26294986 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 508-661 |
| Cow position: | chr12:37516071-37516226 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 510-639 |
| Cow position: | chr12:17662718-17662590 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 515-687 |
| Cow position: | chr12:29067328-29067157 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 128 |
| Conread position: | 525-649 |
| Cow position: | chr12:37095807-37095682 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 709-862 |
| Cow position: | chr12:33277059-33277214 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 723-858 |
| Cow position: | chr12:33350878-33350743 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 730-864 |
| Cow position: | chr12:11306100-11306234 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 730-864 |
| Cow position: | chr12:29758950-29759085 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.