Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 261-661 |
| Cow position: | chr13:2980989-2980583 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 285-673 |
| Cow position: | chr13:16988365-16988752 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 287-649 |
| Cow position: | chr13:13533200-13532830 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 298-647 |
| Cow position: | chr13:17873152-17873494 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 133, 22 |
| Conread position: | 302-664 |
| Cow position: | chr13:493057-492691 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 303-654 |
| Cow position: | chr13:24153566-24153908 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 303-719 |
| Cow position: | chr13:22114638-22115034 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 309-654 |
| Cow position: | chr13:14725161-14724812 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 43 |
| Conread position: | 322-661 |
| Cow position: | chr13:12570080-12570412 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 327-675 |
| Cow position: | chr13:46134085-46134435 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 345-668 |
| Cow position: | chr13:48484682-48484349 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 391-647 |
| Cow position: | chr13:45041506-45041770 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 410-634 |
| Cow position: | chr13:36404116-36403891 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 410-661 |
| Cow position: | chr13:41254807-41255060 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 413-640 |
| Cow position: | chr13:46479625-46479862 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 413-661 |
| Cow position: | chr13:50790602-50790351 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 414-661 |
| Cow position: | chr13:18836488-18836234 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 415-650 |
| Cow position: | chr13:42855013-42854782 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 418-649 |
| Cow position: | chr13:17546579-17546819 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 109 |
| Conread position: | 426-649 |
| Cow position: | chr13:21388761-21388983 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 63 |
| Conread position: | 426-652 |
| Cow position: | chr13:47613517-47613294 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 464-661 |
| Cow position: | chr13:34794896-34794696 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 468-650 |
| Cow position: | chr13:55958055-55957876 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 469-649 |
| Cow position: | chr13:3119963-3120142 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 469-660 |
| Cow position: | chr13:5656446-5656636 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 92, 12 |
| Conread position: | 469-688 |
| Cow position: | chr13:6077107-6077326 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 470-679 |
| Cow position: | chr13:27738085-27737874 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 92, 38 |
| Conread position: | 471-661 |
| Cow position: | chr13:16123166-16122973 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 475-661 |
| Cow position: | chr13:30484591-30484777 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 476-656 |
| Cow position: | chr13:32842210-32842031 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 94, 27 |
| Conread position: | 477-649 |
| Cow position: | chr13:37347860-37347682 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 478-644 |
| Cow position: | chr13:35008924-35008757 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 478-649 |
| Cow position: | chr13:56731675-56731504 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 478-661 |
| Cow position: | chr13:41564750-41564932 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 482-657 |
| Cow position: | chr13:16160671-16160847 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 79, 26 |
| Conread position: | 493-661 |
| Cow position: | chr13:38725297-38725468 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 505-661 |
| Cow position: | chr13:38727425-38727265 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 506-661 |
| Cow position: | chr13:11170683-11170842 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 510-661 |
| Cow position: | chr13:53714190-53714037 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 511-633 |
| Cow position: | chr13:28550268-28550145 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 512-657 |
| Cow position: | chr13:48787304-48787158 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 142 |
| Conread position: | 512-687 |
| Cow position: | chr13:2905627-2905795 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 143, 45 |
| Conread position: | 512-718 |
| Cow position: | chr13:44184558-44184763 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 192 |
| Conread position: | 514-640 |
| Cow position: | chr13:47473021-47473149 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 514-647 |
| Cow position: | chr13:20664465-20664330 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 521-660 |
| Cow position: | chr13:46641744-46641603 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 702-868 |
| Cow position: | chr13:34264498-34264660 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 704-876 |
| Cow position: | chr13:48580384-48580557 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 107, 24 |
| Conread position: | 726-864 |
| Cow position: | chr13:10854428-10854568 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 729-864 |
| Cow position: | chr13:57746435-57746297 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.