Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 262-661 |
| Cow position: | chr15:49067942-49067550 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 60 |
| Conread position: | 266-664 |
| Cow position: | chr15:35609821-35610216 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 104, 26 |
| Conread position: | 284-661 |
| Cow position: | chr15:8003365-8003752 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 291-643 |
| Cow position: | chr15:38751558-38751200 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 306-649 |
| Cow position: | chr15:26149021-26148687 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 88, 52 |
| Conread position: | 307-647 |
| Cow position: | chr15:9115744-9116089 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 309-649 |
| Cow position: | chr15:17674734-17674382 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 104 |
| Conread position: | 309-649 |
| Cow position: | chr15:20628187-20628522 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 318-644 |
| Cow position: | chr15:13943186-13943519 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 318-661 |
| Cow position: | chr15:30790349-30790690 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 318-661 |
| Cow position: | chr15:39360838-39360492 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 164, 95 |
| Conread position: | 327-675 |
| Cow position: | chr15:37915423-37915781 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 407-657 |
| Cow position: | chr15:49446692-49446946 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 468-649 |
| Cow position: | chr15:23103691-23103505 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 469-648 |
| Cow position: | chr15:28962366-28962540 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 469-661 |
| Cow position: | chr15:35159457-35159262 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 477-649 |
| Cow position: | chr15:11720395-11720563 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 477-659 |
| Cow position: | chr15:16303196-16303382 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 90 |
| Conread position: | 477-661 |
| Cow position: | chr15:5883945-5883759 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 478-649 |
| Cow position: | chr15:24963670-24963497 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 478-659 |
| Cow position: | chr15:15171362-15171179 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 478-673 |
| Cow position: | chr15:33800676-33800876 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 506-653 |
| Cow position: | chr15:46860214-46860362 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 506-661 |
| Cow position: | chr15:13262091-13262247 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 109, 131 |
| Conread position: | 510-678 |
| Cow position: | chr15:6283377-6283203 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 511-661 |
| Cow position: | chr15:33219131-33219285 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 511-688 |
| Cow position: | chr15:39494279-39494461 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 172 |
| Conread position: | 512-661 |
| Cow position: | chr15:32907224-32907377 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 512-665 |
| Cow position: | chr15:7446724-7446879 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 514-648 |
| Cow position: | chr15:37958366-37958230 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 516-648 |
| Cow position: | chr15:48413133-48413264 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 517-647 |
| Cow position: | chr15:18688153-18688020 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 686-859 |
| Cow position: | chr15:35067219-35067045 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 695-858 |
| Cow position: | chr15:1992939-1992771 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 703-865 |
| Cow position: | chr15:16669156-16669313 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 704-862 |
| Cow position: | chr15:36277925-36278083 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 705-863 |
| Cow position: | chr15:41807275-41807430 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 723-864 |
| Cow position: | chr15:52132091-52131948 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 730-862 |
| Cow position: | chr15:11287142-11287275 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 733-870 |
| Cow position: | chr15:12283405-12283267 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.