Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 1-862 |
| Cow position: | chr16:19446870-19446037 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 116 |
| Conread position: | 252-661 |
| Cow position: | chr16:3089524-3089932 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 10, 47 |
| Conread position: | 279-661 |
| Cow position: | chr16:25067588-25067208 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 298-661 |
| Cow position: | chr16:46099476-46099838 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 302-661 |
| Cow position: | chr16:23930354-23930715 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 305-630 |
| Cow position: | chr16:45558039-45558348 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 159, 26 |
| Conread position: | 305-650 |
| Cow position: | chr16:42636585-42636932 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 308-661 |
| Cow position: | chr16:41528455-41528116 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 62, 36 |
| Conread position: | 317-661 |
| Cow position: | chr16:29322384-29322727 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 318-661 |
| Cow position: | chr16:11080803-11080449 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 354-664 |
| Cow position: | chr16:16140135-16140457 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 398-661 |
| Cow position: | chr16:3308394-3308667 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 417-611 |
| Cow position: | chr16:30570566-30570758 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 417-649 |
| Cow position: | chr16:46497172-46497408 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 8, 98 |
| Conread position: | 453-733 |
| Cow position: | chr16:20669314-20669044 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 110, 15 |
| Conread position: | 468-660 |
| Cow position: | chr16:46063115-46063305 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 187, 44 |
| Conread position: | 468-661 |
| Cow position: | chr16:50456691-50456884 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 468-687 |
| Cow position: | chr16:19305818-19306042 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 468-688 |
| Cow position: | chr16:1769668-1769889 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 469-649 |
| Cow position: | chr16:32131984-32131802 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 476-661 |
| Cow position: | chr16:38499279-38499091 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 86, 32 |
| Conread position: | 478-659 |
| Cow position: | chr16:42133457-42133275 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 479-678 |
| Cow position: | chr16:45300867-45301066 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 82, 29 |
| Conread position: | 506-665 |
| Cow position: | chr16:13023580-13023741 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 508-660 |
| Cow position: | chr16:40384626-40384472 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 108 |
| Conread position: | 508-661 |
| Cow position: | chr16:12878971-12879120 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 147, 34 |
| Conread position: | 509-665 |
| Cow position: | chr16:28863547-28863705 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 132 |
| Conread position: | 510-661 |
| Cow position: | chr16:42409478-42409631 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 510-675 |
| Cow position: | chr16:29097410-29097237 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 512-660 |
| Cow position: | chr16:2508732-2508883 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 512-661 |
| Cow position: | chr16:41531398-41531246 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 89 |
| Conread position: | 512-661 |
| Cow position: | chr16:46617148-46616997 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 136 |
| Conread position: | 512-661 |
| Cow position: | chr16:52242976-52243128 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 512-687 |
| Cow position: | chr16:42165475-42165650 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 513-661 |
| Cow position: | chr16:16586868-16586719 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 124 |
| Conread position: | 517-660 |
| Cow position: | chr16:42517855-42517709 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 521-644 |
| Cow position: | chr16:37081996-37082121 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 704-864 |
| Cow position: | chr16:14799142-14799298 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 706-864 |
| Cow position: | chr16:2722448-2722605 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 21 |
| Conread position: | 707-864 |
| Cow position: | chr16:45058004-45057851 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 21 |
| Conread position: | 730-858 |
| Cow position: | chr16:24634968-24635096 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 85, 122 |
| Conread position: | 730-862 |
| Cow position: | chr16:48894252-48894385 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 730-876 |
| Cow position: | chr16:22785471-22785619 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 733-864 |
| Cow position: | chr16:43850258-43850390 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 733-864 |
| Cow position: | chr16:47781872-47781740 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 735-864 |
| Cow position: | chr16:15509499-15509370 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.