Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 272-661 |
| Cow position: | chr17:32292568-32292955 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 97, 77 |
| Conread position: | 298-624 |
| Cow position: | chr17:29561688-29561364 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 298-661 |
| Cow position: | chr17:30752887-30753260 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 298-665 |
| Cow position: | chr17:40080579-40080204 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 303-661 |
| Cow position: | chr17:35219179-35219539 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 327-661 |
| Cow position: | chr17:26477268-26476938 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 375-644 |
| Cow position: | chr17:27788294-27788027 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 99, 35 |
| Conread position: | 375-661 |
| Cow position: | chr17:29919500-29919767 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 386-687 |
| Cow position: | chr17:5358127-5358432 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 393-648 |
| Cow position: | chr17:28467838-28467590 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 6, 91 |
| Conread position: | 397-649 |
| Cow position: | chr17:42428491-42428226 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 95 |
| Conread position: | 413-649 |
| Cow position: | chr17:41920091-41919846 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 464-641 |
| Cow position: | chr17:28100594-28100773 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 464-661 |
| Cow position: | chr17:35575944-35575746 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 468-663 |
| Cow position: | chr17:7704136-7704333 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 469-660 |
| Cow position: | chr17:26290534-26290342 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 470-648 |
| Cow position: | chr17:28820723-28820901 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 471-648 |
| Cow position: | chr17:28169531-28169352 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 476-670 |
| Cow position: | chr17:18649635-18649441 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 476-676 |
| Cow position: | chr17:42349520-42349727 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 477-652 |
| Cow position: | chr17:18628200-18628026 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 477-657 |
| Cow position: | chr17:4231055-4230876 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 477-660 |
| Cow position: | chr17:18730267-18730450 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 506-647 |
| Cow position: | chr17:26367432-26367291 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 510-657 |
| Cow position: | chr17:33879942-33880091 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 510-675 |
| Cow position: | chr17:42349178-42349347 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 53, 109 |
| Conread position: | 512-647 |
| Cow position: | chr17:26242458-26242593 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 514-661 |
| Cow position: | chr17:42662594-42662747 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 517-661 |
| Cow position: | chr17:16321119-16320972 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 525-678 |
| Cow position: | chr17:36818377-36818223 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 705-853 |
| Cow position: | chr17:37722514-37722662 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 730-864 |
| Cow position: | chr17:28847033-28847167 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 76 |
| Conread position: | 731-864 |
| Cow position: | chr17:7211225-7211091 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 48, 55 |
Show alignments to all cow chromosomes.