Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 266-661 |
| Cow position: | chr3:73597971-73598367 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 81 |
| Conread position: | 280-661 |
| Cow position: | chr3:9806594-9806228 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 281-661 |
| Cow position: | chr3:8496640-8497024 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 298-649 |
| Cow position: | chr3:61701204-61701551 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 22 |
| Conread position: | 298-649 |
| Cow position: | chr3:77118264-77117915 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 298-661 |
| Cow position: | chr3:15658572-15658218 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 167, 13 |
| Conread position: | 298-661 |
| Cow position: | chr3:43632558-43632906 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 300-628 |
| Cow position: | chr3:55887948-55888277 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 303-649 |
| Cow position: | chr3:31345893-31345555 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 156, 21 |
| Conread position: | 303-661 |
| Cow position: | chr3:58764361-58764735 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 67, 17 |
| Conread position: | 328-643 |
| Cow position: | chr3:70253939-70254249 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 362-661 |
| Cow position: | chr3:30192248-30192560 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 107, 56 |
| Conread position: | 375-661 |
| Cow position: | chr3:3809313-3809608 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 412-661 |
| Cow position: | chr3:70370722-70370986 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 102 |
| Conread position: | 413-624 |
| Cow position: | chr3:77041714-77041500 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 413-641 |
| Cow position: | chr3:72377378-72377136 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 413-733 |
| Cow position: | chr3:38017717-38018028 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 213 |
| Conread position: | 418-659 |
| Cow position: | chr3:61283442-61283205 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 150, 81 |
| Conread position: | 462-660 |
| Cow position: | chr3:44422055-44421853 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 468-633 |
| Cow position: | chr3:72800533-72800700 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 468-644 |
| Cow position: | chr3:64299978-64300150 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 468-657 |
| Cow position: | chr3:42876538-42876729 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 40 |
| Conread position: | 469-624 |
| Cow position: | chr3:30194767-30194611 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 469-660 |
| Cow position: | chr3:48214426-48214616 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 159, 39 |
| Conread position: | 469-660 |
| Cow position: | chr3:58715535-58715729 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 469-661 |
| Cow position: | chr3:76902111-76901920 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 469-661 |
| Cow position: | chr3:78242261-78242066 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 39 |
| Conread position: | 477-648 |
| Cow position: | chr3:55130433-55130262 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 477-649 |
| Cow position: | chr3:60618527-60618365 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 477-657 |
| Cow position: | chr3:8456633-8456812 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 477-664 |
| Cow position: | chr3:2274315-2274125 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 479-631 |
| Cow position: | chr3:2355868-2356017 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 479-661 |
| Cow position: | chr3:8099184-8099001 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 479-661 |
| Cow position: | chr3:61341833-61342020 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 496-664 |
| Cow position: | chr3:66338998-66338832 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 65, 5 |
| Conread position: | 506-650 |
| Cow position: | chr3:24910043-24909898 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 510-648 |
| Cow position: | chr3:10679749-10679610 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 510-648 |
| Cow position: | chr3:32166518-32166380 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 130, 122 |
| Conread position: | 510-649 |
| Cow position: | chr3:11660759-11660618 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 512-649 |
| Cow position: | chr3:69207248-69207387 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 512-661 |
| Cow position: | chr3:26615407-26615558 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 125 |
| Conread position: | 512-661 |
| Cow position: | chr3:61884653-61884502 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 512-677 |
| Cow position: | chr3:64180881-64181048 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 518-661 |
| Cow position: | chr3:13469765-13469911 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 524-647 |
| Cow position: | chr3:18613985-18613861 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 684-864 |
| Cow position: | chr3:43004212-43004393 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 131, 30 |
| Conread position: | 704-863 |
| Cow position: | chr3:12531547-12531705 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 24 |
| Conread position: | 705-858 |
| Cow position: | chr3:49414181-49414330 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 730-863 |
| Cow position: | chr3:2285233-2285100 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 730-864 |
| Cow position: | chr3:5317214-5317349 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 730-864 |
| Cow position: | chr3:26581523-26581659 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 730-864 |
| Cow position: | chr3:27633457-27633592 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 730-876 |
| Cow position: | chr3:1339449-1339299 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 730-876 |
| Cow position: | chr3:77589931-77589784 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.