Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 264-661 |
| Cow position: | chr4:19543780-19543397 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 270-648 |
| Cow position: | chr4:34073776-34074155 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 175, 50 |
| Conread position: | 279-661 |
| Cow position: | chr4:39228193-39227810 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 280-661 |
| Cow position: | chr4:51514661-51515031 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 285-642 |
| Cow position: | chr4:34116703-34117058 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 85, 35 |
| Conread position: | 316-664 |
| Cow position: | chr4:54151235-54151584 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 318-660 |
| Cow position: | chr4:36027686-36028032 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 320-659 |
| Cow position: | chr4:57475943-57475600 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 368-649 |
| Cow position: | chr4:22360021-22360303 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 378-723 |
| Cow position: | chr4:22646130-22646479 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 397-649 |
| Cow position: | chr4:66412451-66412714 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 95 |
| Conread position: | 402-649 |
| Cow position: | chr4:38831725-38831466 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 406-649 |
| Cow position: | chr4:1737292-1737046 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 410-647 |
| Cow position: | chr4:43232798-43233040 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 412-661 |
| Cow position: | chr4:54445559-54445824 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 111 |
| Conread position: | 413-634 |
| Cow position: | chr4:49913394-49913619 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 413-649 |
| Cow position: | chr4:13652713-13652468 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 413-661 |
| Cow position: | chr4:34347041-34347296 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 417-664 |
| Cow position: | chr4:8120164-8120425 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 423-649 |
| Cow position: | chr4:58906848-58907080 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 467-661 |
| Cow position: | chr4:66460089-66460283 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 188, 36 |
| Conread position: | 469-644 |
| Cow position: | chr4:52307911-52308086 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 469-661 |
| Cow position: | chr4:11225542-11225734 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 470-661 |
| Cow position: | chr4:37041102-37041296 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 159 |
| Conread position: | 476-665 |
| Cow position: | chr4:10996212-10996403 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 477-661 |
| Cow position: | chr4:25572233-25572045 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 160 |
| Conread position: | 478-641 |
| Cow position: | chr4:54014214-54014376 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 479-648 |
| Cow position: | chr4:37946962-37947131 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 82, 114 |
| Conread position: | 479-648 |
| Cow position: | chr4:66309079-66308909 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 492-664 |
| Cow position: | chr4:27167235-27167061 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 493-661 |
| Cow position: | chr4:51425781-51425612 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 15 |
| Conread position: | 498-640 |
| Cow position: | chr4:50676686-50676831 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 508-661 |
| Cow position: | chr4:38845498-38845343 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 512-638 |
| Cow position: | chr4:1389475-1389350 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 512-641 |
| Cow position: | chr4:57012116-57012244 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 105 |
| Conread position: | 512-661 |
| Cow position: | chr4:68941558-68941707 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 143, 43 |
| Conread position: | 513-647 |
| Cow position: | chr4:42928639-42928503 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 514-665 |
| Cow position: | chr4:56670583-56670429 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 531-661 |
| Cow position: | chr4:22906145-22906278 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 645-862 |
| Cow position: | chr4:2443246-2443462 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 704-864 |
| Cow position: | chr4:31002768-31002927 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 110, 24 |
| Conread position: | 721-871 |
| Cow position: | chr4:5784287-5784136 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 728-862 |
| Cow position: | chr4:4519714-4519579 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 732-870 |
| Cow position: | chr4:4029392-4029252 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.