Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 273-647 |
| Cow position: | chr5:33806433-33806802 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 275-663 |
| Cow position: | chr5:21184161-21184553 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 92, 19 |
| Conread position: | 287-648 |
| Cow position: | chr5:35787649-35787298 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 5, 25 |
| Conread position: | 288-585 |
| Cow position: | chr5:42983147-42982849 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 32 |
| Conread position: | 298-649 |
| Cow position: | chr5:70959364-70959708 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 153, 32 |
| Conread position: | 299-617 |
| Cow position: | chr5:21018366-21018674 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 128, 25 |
| Conread position: | 301-657 |
| Cow position: | chr5:40260513-40260879 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 302-648 |
| Cow position: | chr5:24538801-24539159 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 303-661 |
| Cow position: | chr5:71467138-71466785 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 304-644 |
| Cow position: | chr5:69632510-69632858 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 304-652 |
| Cow position: | chr5:19060916-19060570 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 316-654 |
| Cow position: | chr5:62271937-62272275 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 318-660 |
| Cow position: | chr5:13688428-13688077 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 84 |
| Conread position: | 334-661 |
| Cow position: | chr5:25254834-25254506 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 417-649 |
| Cow position: | chr5:20899185-20898949 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 468-644 |
| Cow position: | chr5:22756994-22756820 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 470-661 |
| Cow position: | chr5:74160377-74160186 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 92, 38 |
| Conread position: | 477-661 |
| Cow position: | chr5:51887145-51886959 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 477-665 |
| Cow position: | chr5:40614043-40614236 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 478-647 |
| Cow position: | chr5:24527025-24527191 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 478-661 |
| Cow position: | chr5:67584348-67584172 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 177, 30 |
| Conread position: | 478-664 |
| Cow position: | chr5:15618035-15617846 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 171 |
| Conread position: | 484-661 |
| Cow position: | chr5:4105502-4105323 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 509-660 |
| Cow position: | chr5:39195316-39195469 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 92 |
| Conread position: | 510-649 |
| Cow position: | chr5:64207044-64206903 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 512-661 |
| Cow position: | chr5:27689218-27689367 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 143, 108 |
| Conread position: | 512-661 |
| Cow position: | chr5:28651166-28651022 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 143, 46 |
| Conread position: | 512-688 |
| Cow position: | chr5:22133256-22133078 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 136 |
| Conread position: | 512-694 |
| Cow position: | chr5:65054398-65054221 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 50, 122 |
| Conread position: | 514-664 |
| Cow position: | chr5:44367082-44366929 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 514-723 |
| Cow position: | chr5:3417574-3417788 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 518-649 |
| Cow position: | chr5:48474587-48474454 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 668-864 |
| Cow position: | chr5:56826698-56826503 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 692-876 |
| Cow position: | chr5:14071953-14072137 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 704-864 |
| Cow position: | chr5:33516154-33516313 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 704-876 |
| Cow position: | chr5:12581311-12581140 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 24 |
| Conread position: | 720-862 |
| Cow position: | chr5:20648656-20648800 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 723-864 |
| Cow position: | chr5:67002043-67001899 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 730-855 |
| Cow position: | chr5:42587312-42587438 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 730-864 |
| Cow position: | chr5:21145632-21145767 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 730-876 |
| Cow position: | chr5:62580573-62580428 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 131 |
Show alignments to all cow chromosomes.