Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 262-637 |
| Cow position: | chr7:11906783-11906399 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 63 |
| Conread position: | 269-649 |
| Cow position: | chr7:23897482-23897866 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 270-661 |
| Cow position: | chr7:21565239-21564859 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 272-649 |
| Cow position: | chr7:51940032-51939654 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 73 |
| Conread position: | 273-649 |
| Cow position: | chr7:9047942-9047562 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 75 |
| Conread position: | 278-652 |
| Cow position: | chr7:10822652-10823018 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 281-661 |
| Cow position: | chr7:7889963-7890350 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 89, 14 |
| Conread position: | 281-661 |
| Cow position: | chr7:31542273-31541896 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 284-640 |
| Cow position: | chr7:10272337-10271985 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 285-647 |
| Cow position: | chr7:17628812-17628454 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 285-660 |
| Cow position: | chr7:26388919-26389305 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 291-649 |
| Cow position: | chr7:17796323-17796683 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 292-673 |
| Cow position: | chr7:35066224-35066615 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 275 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 294-640 |
| Cow position: | chr7:23411244-23411607 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 127 |
| Conread position: | 298-617 |
| Cow position: | chr7:43014007-43013692 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 298-660 |
| Cow position: | chr7:13053128-13052764 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 298-661 |
| Cow position: | chr7:14775663-14775301 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 298-664 |
| Cow position: | chr7:13933990-13934358 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 183, 22 |
| Conread position: | 298-684 |
| Cow position: | chr7:21847074-21847457 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 300-626 |
| Cow position: | chr7:42162175-42161847 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 313-659 |
| Cow position: | chr7:24278098-24278443 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 316-664 |
| Cow position: | chr7:6779597-6779243 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 318-631 |
| Cow position: | chr7:13285384-13285064 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 318-659 |
| Cow position: | chr7:51627957-51628301 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 318-664 |
| Cow position: | chr7:37972182-37972525 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 319-674 |
| Cow position: | chr7:43218500-43218859 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 326-649 |
| Cow position: | chr7:40184600-40184931 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 327-661 |
| Cow position: | chr7:3000266-2999935 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 327-677 |
| Cow position: | chr7:53545715-53546074 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 10, 83 |
| Conread position: | 329-661 |
| Cow position: | chr7:16003915-16004249 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 369-657 |
| Cow position: | chr7:38546313-38546588 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 197, 24 |
| Conread position: | 375-641 |
| Cow position: | chr7:17834677-17834411 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 106, 32 |
| Conread position: | 375-661 |
| Cow position: | chr7:13629720-13629425 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 375-661 |
| Cow position: | chr7:14892081-14891790 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 112, 22 |
| Conread position: | 401-661 |
| Cow position: | chr7:14012130-14012390 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 410-648 |
| Cow position: | chr7:29112422-29112193 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 451-648 |
| Cow position: | chr7:34833270-34833062 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 64 |
| Conread position: | 459-665 |
| Cow position: | chr7:31441464-31441251 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 467-661 |
| Cow position: | chr7:28596390-28596193 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 468-733 |
| Cow position: | chr7:51472827-51473088 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 187, 40 |
| Conread position: | 469-657 |
| Cow position: | chr7:26782783-26782593 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 121 |
| Conread position: | 469-661 |
| Cow position: | chr7:9108187-9107991 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 471-652 |
| Cow position: | chr7:8358389-8358571 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 471-661 |
| Cow position: | chr7:22307318-22307509 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 477-640 |
| Cow position: | chr7:20889265-20889099 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 84, 31 |
| Conread position: | 477-648 |
| Cow position: | chr7:1216071-1215899 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 477-649 |
| Cow position: | chr7:307227-307053 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 31 |
| Conread position: | 477-649 |
| Cow position: | chr7:9747669-9747839 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 86, 27 |
| Conread position: | 477-652 |
| Cow position: | chr7:35172478-35172300 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 24 |
| Conread position: | 477-652 |
| Cow position: | chr7:36260416-36260240 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 477-661 |
| Cow position: | chr7:1539279-1539092 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 31 |
| Conread position: | 478-659 |
| Cow position: | chr7:32721475-32721657 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 478-661 |
| Cow position: | chr7:1329332-1329148 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 491-649 |
| Cow position: | chr7:44595877-44596034 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 72, 13 |
| Conread position: | 506-687 |
| Cow position: | chr7:4513696-4513515 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 508-661 |
| Cow position: | chr7:49110956-49111109 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 508-675 |
| Cow position: | chr7:65570230-65570062 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 510-646 |
| Cow position: | chr7:16093353-16093491 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 510-661 |
| Cow position: | chr7:5918808-5918660 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 145, 52 |
| Conread position: | 511-661 |
| Cow position: | chr7:36831880-36831727 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 512-649 |
| Cow position: | chr7:16280379-16280518 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 512-661 |
| Cow position: | chr7:35744041-35744189 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 143, 8 |
| Conread position: | 512-661 |
| Cow position: | chr7:46464324-46464469 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 143, 28 |
| Conread position: | 512-677 |
| Cow position: | chr7:46070525-46070357 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 513-663 |
| Cow position: | chr7:9809994-9810147 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 519-661 |
| Cow position: | chr7:63658996-63659140 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 705-859 |
| Cow position: | chr7:65519474-65519630 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 730-862 |
| Cow position: | chr7:8893433-8893566 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 730-864 |
| Cow position: | chr7:43257807-43257671 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 731-864 |
| Cow position: | chr7:46216660-46216526 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.