Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 255-641 |
| Cow position: | chr8:52001604-52001222 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 115, 41 |
| Conread position: | 264-661 |
| Cow position: | chr8:30553310-30553704 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 281-661 |
| Cow position: | chr8:30110429-30110033 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 90, 17 |
| Conread position: | 281-710 |
| Cow position: | chr8:28293082-28293514 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 301 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 298-630 |
| Cow position: | chr8:40691293-40691630 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 298-649 |
| Cow position: | chr8:35275484-35275139 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 298-661 |
| Cow position: | chr8:11739621-11739985 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 171, 11 |
| Conread position: | 298-661 |
| Cow position: | chr8:29516729-29517102 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 298-661 |
| Cow position: | chr8:51926547-51926176 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 306-637 |
| Cow position: | chr8:4183589-4183262 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 316-661 |
| Cow position: | chr8:37342951-37342602 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 317-653 |
| Cow position: | chr8:2420975-2421313 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 153, 33 |
| Conread position: | 318-649 |
| Cow position: | chr8:19662687-19662358 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 318-650 |
| Cow position: | chr8:43175002-43174668 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 318-661 |
| Cow position: | chr8:53875349-53875701 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 320-659 |
| Cow position: | chr8:24831089-24830735 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 342-694 |
| Cow position: | chr8:23900364-23900020 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 410-661 |
| Cow position: | chr8:20634176-20634447 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 165 |
| Conread position: | 413-645 |
| Cow position: | chr8:40031492-40031715 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 65, 36 |
| Conread position: | 413-659 |
| Cow position: | chr8:51012183-51012447 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 417-643 |
| Cow position: | chr8:19911861-19912084 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 417-677 |
| Cow position: | chr8:39597043-39596781 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 97 |
| Conread position: | 453-661 |
| Cow position: | chr8:56411392-56411186 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 469-664 |
| Cow position: | chr8:45568119-45568319 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 93, 32 |
| Conread position: | 475-661 |
| Cow position: | chr8:36952599-36952788 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 85, 33 |
| Conread position: | 477-644 |
| Cow position: | chr8:55068250-55068081 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 86, 23 |
| Conread position: | 477-689 |
| Cow position: | chr8:55585249-55585450 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 478-661 |
| Cow position: | chr8:25797244-25797427 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 116, 30 |
| Conread position: | 478-661 |
| Cow position: | chr8:49331727-49331912 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 34 |
| Conread position: | 478-673 |
| Cow position: | chr8:19637346-19637539 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 164, 30 |
| Conread position: | 478-717 |
| Cow position: | chr8:30100461-30100228 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 479-661 |
| Cow position: | chr8:27975495-27975682 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 479-664 |
| Cow position: | chr8:60013346-60013527 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 484-862 |
| Cow position: | chr8:8479822-8480199 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 176, 32 |
| Conread position: | 488-648 |
| Cow position: | chr8:38549007-38549170 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 496-675 |
| Cow position: | chr8:40574127-40574309 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 77, 12 |
| Conread position: | 505-643 |
| Cow position: | chr8:25843576-25843436 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 506-661 |
| Cow position: | chr8:26672760-26672606 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 149, 58 |
| Conread position: | 510-660 |
| Cow position: | chr8:23104721-23104570 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 512-647 |
| Cow position: | chr8:41743550-41743417 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 512-660 |
| Cow position: | chr8:5513857-5514006 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 512-661 |
| Cow position: | chr8:48741105-48740954 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 54, 80 |
| Conread position: | 512-682 |
| Cow position: | chr8:23609908-23610071 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 514-649 |
| Cow position: | chr8:38365305-38365167 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 94 |
| Conread position: | 514-661 |
| Cow position: | chr8:19425171-19425321 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 528-650 |
| Cow position: | chr8:46518770-46518646 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 702-864 |
| Cow position: | chr8:40432260-40432418 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 703-876 |
| Cow position: | chr8:14617287-14617464 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 707-864 |
| Cow position: | chr8:19773078-19772917 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 720-867 |
| Cow position: | chr8:33438389-33438240 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 730-876 |
| Cow position: | chr8:32960023-32960170 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 732-858 |
| Cow position: | chr8:54159320-54159194 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 83, 96 |
Show alignments to all cow chromosomes.