Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055J03.5 |
| Conread position: | 255-664 |
| Cow position: | chrX:39462887-39463308 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 32, 99 |
| Conread position: | 257-651 |
| Cow position: | chrX:39952176-39952562 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 263-661 |
| Cow position: | chrX:31259881-31260279 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 86, 35 |
| Conread position: | 265-641 |
| Cow position: | chrX:20970223-20969848 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 104, 26 |
| Conread position: | 267-650 |
| Cow position: | chrX:31839674-31839298 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 210, 41 |
| Conread position: | 282-616 |
| Cow position: | chrX:25395790-25396114 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 288-648 |
| Cow position: | chrX:8102499-8102852 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 292-677 |
| Cow position: | chrX:28081150-28080766 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 298-561 |
| Cow position: | chrX:29027535-29027799 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 298-620 |
| Cow position: | chrX:18405319-18405640 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 298-649 |
| Cow position: | chrX:31805235-31804898 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 300-661 |
| Cow position: | chrX:5507818-5507451 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 311-613 |
| Cow position: | chrX:36270351-36270053 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 318-634 |
| Cow position: | chrX:26610372-26610043 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 327-661 |
| Cow position: | chrX:20178139-20178461 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 328-644 |
| Cow position: | chrX:37411895-37411579 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 337-665 |
| Cow position: | chrX:28863666-28863991 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 395-643 |
| Cow position: | chrX:16989018-16988780 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 81 |
| Conread position: | 413-649 |
| Cow position: | chrX:27210836-27210595 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 100 |
| Conread position: | 413-659 |
| Cow position: | chrX:17617293-17617543 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 55, 99 |
| Conread position: | 414-649 |
| Cow position: | chrX:41305599-41305844 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 435-663 |
| Cow position: | chrX:37949782-37949550 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 23, 75 |
| Conread position: | 469-661 |
| Cow position: | chrX:19636877-19636686 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 472-650 |
| Cow position: | chrX:10904694-10904872 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 475-648 |
| Cow position: | chrX:33004219-33004046 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 477-643 |
| Cow position: | chrX:20859679-20859514 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 27 |
| Conread position: | 477-644 |
| Cow position: | chrX:20185818-20185651 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 477-644 |
| Cow position: | chrX:37128810-37128642 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 477-661 |
| Cow position: | chrX:11799671-11799489 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 31 |
| Conread position: | 477-661 |
| Cow position: | chrX:23876156-23876342 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 477-661 |
| Cow position: | chrX:37231622-37231436 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 35 |
| Conread position: | 477-688 |
| Cow position: | chrX:23081251-23081038 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 478-661 |
| Cow position: | chrX:12852549-12852733 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 478-664 |
| Cow position: | chrX:25924576-25924764 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 482-678 |
| Cow position: | chrX:4499579-4499382 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 26 |
| Conread position: | 493-661 |
| Cow position: | chrX:4664671-4664841 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 496-661 |
| Cow position: | chrX:23932297-23932463 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 505-677 |
| Cow position: | chrX:20701085-20701257 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 155 |
| Conread position: | 506-639 |
| Cow position: | chrX:42262617-42262751 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 55, 103 |
| Conread position: | 510-661 |
| Cow position: | chrX:34079294-34079141 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 512-661 |
| Cow position: | chrX:5909570-5909721 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 512-687 |
| Cow position: | chrX:25738986-25738809 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 514-643 |
| Cow position: | chrX:21217668-21217799 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 514-660 |
| Cow position: | chrX:41541245-41541398 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 519-648 |
| Cow position: | chrX:38826461-38826591 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 685-862 |
| Cow position: | chrX:4019273-4019451 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 701-864 |
| Cow position: | chrX:1330164-1330331 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 702-854 |
| Cow position: | chrX:6672407-6672259 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 26 |
| Conread position: | 706-858 |
| Cow position: | chrX:18518664-18518509 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 727-863 |
| Cow position: | chrX:4590554-4590416 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 729-876 |
| Cow position: | chrX:9910155-9910303 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 86, 134 |
| Conread position: | 730-864 |
| Cow position: | chrX:4625515-4625381 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 731-864 |
| Cow position: | chrX:6472311-6472178 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 77 |
Show alignments to all cow chromosomes.