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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8055M19.3
        

               
Conread position:
               
5-136
               

               
Cow position:
               
chr1:89741158-89741030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
6-533
               

               
Cow position:
               
chr1:38388639-38388133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
14-334
               

               
Cow position:
               
chr1:52322817-52323140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
31-203
               

               
Cow position:
               
chr1:67900914-67900739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
111, 80
               

               
Conread position:
               
31-347
               

               
Cow position:
               
chr1:89478112-89478434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
31-548
               

               
Cow position:
               
chr1:79637869-79637351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 37
               

               
Conread position:
               
33-505
               

               
Cow position:
               
chr1:91898053-91898526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
33-520
               

               
Cow position:
               
chr1:13449233-13449722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
33-520
               

               
Cow position:
               
chr1:21086450-21086941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 35
               

               
Conread position:
               
33-520
               

               
Cow position:
               
chr1:33850301-33850791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
113, 41
               

               
Conread position:
               
33-540
               

               
Cow position:
               
chr1:56722165-56722687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
109, 41
               

               
Conread position:
               
37-562
               

               
Cow position:
               
chr1:67285583-67286112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 58
               

               
Conread position:
               
38-327
               

               
Cow position:
               
chr1:87460469-87460189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
200, 73
               

               
Conread position:
               
38-520
               

               
Cow position:
               
chr1:52173431-52172940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
38-534
               

               
Cow position:
               
chr1:77122476-77122004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 73
               

               
Conread position:
               
41-622
               

               
Cow position:
               
chr1:40514399-40513834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 53
               

               
Conread position:
               
43-624
               

               
Cow position:
               
chr1:18245301-18244724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 52
               

               
Conread position:
               
47-529
               

               
Cow position:
               
chr1:89771798-89771323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 21
               

               
Conread position:
               
47-561
               

               
Cow position:
               
chr1:102548270-102548767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
50-520
               

               
Cow position:
               
chr1:57655618-57656090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
54-327
               

               
Cow position:
               
chr1:42057675-42057952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
73-540
               

               
Cow position:
               
chr1:85790787-85791253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
74-509
               

               
Cow position:
               
chr1:40685607-40685165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
74-518
               

               
Cow position:
               
chr1:33894589-33895041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
68, 41
               

               
Conread position:
               
74-520
               

               
Cow position:
               
chr1:39542857-39543302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
74-520
               

               
Cow position:
               
chr1:59211053-59210603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
74-520
               

               
Cow position:
               
chr1:62924712-62925163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
74-520
               

               
Cow position:
               
chr1:71563486-71563036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
74-520
               

               
Cow position:
               
chr1:82651728-82652175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 41
               

               
Conread position:
               
74-520
               

               
Cow position:
               
chr1:86549040-86548591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
74-521
               

               
Cow position:
               
chr1:80360084-80359633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
74-530
               

               
Cow position:
               
chr1:9383143-9382704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 41
               

               
Conread position:
               
77-520
               

               
Cow position:
               
chr1:67836039-67835593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr1:11293011-11292573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr1:17013634-17013197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr1:17037448-17037020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr1:30284499-30284061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr1:58223405-58223832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr1:61308114-61308542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr1:69764129-69764562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr1:79921632-79921196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
96-504
               

               
Cow position:
               
chr1:82563619-82564029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
98-518
               

               
Cow position:
               
chr1:55277362-55276950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr1:68501127-68501555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr1:89424697-89425122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr1:91719533-91719107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr1:97559822-97560250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
98-521
               

               
Cow position:
               
chr1:18881279-18880852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
98-548
               

               
Cow position:
               
chr1:31395536-31396003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
123-520
               

               
Cow position:
               
chr1:20828046-20828442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
123-520
               

               
Cow position:
               
chr1:53197922-53198323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
128-520
               

               
Cow position:
               
chr1:56162474-56162862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
163-546
               

               
Cow position:
               
chr1:53363909-53364286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 190
               

               
Conread position:
               
164-509
               

               
Cow position:
               
chr1:3386782-3386453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
164-520
               

               
Cow position:
               
chr1:87449127-87449484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 93
               

               
Conread position:
               
164-520
               

               
Cow position:
               
chr1:88758739-88759097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
79, 126
               

               
Conread position:
               
164-527
               

               
Cow position:
               
chr1:43019302-43019666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
79, 126
               

               
Conread position:
               
165-504
               

               
Cow position:
               
chr1:78289259-78289601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 117
               

               
Conread position:
               
167-520
               

               
Cow position:
               
chr1:30024014-30023659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
77, 123
               

               
Conread position:
               
167-546
               

               
Cow position:
               
chr1:89741026-89740639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 102
               

               
Conread position:
               
167-548
               

               
Cow position:
               
chr1:55324307-55323935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
169-520
               

               
Cow position:
               
chr1:8553505-8553859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
74, 103
               

               
Conread position:
               
173-497
               

               
Cow position:
               
chr1:69402209-69402534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 55
               

               
Conread position:
               
178-504
               

               
Cow position:
               
chr1:25180822-25180484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 52
               

               
Conread position:
               
178-508
               

               
Cow position:
               
chr1:57567184-57567501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 54
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr1:3934912-3934591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr1:33550146-33550476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
37, 31
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr1:76753427-76753096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr1:86699998-86699667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
125, 46
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr1:100598161-100597829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
180-497
               

               
Cow position:
               
chr1:89361194-89361504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
54, 48
               

               
Conread position:
               
181-520
               

               
Cow position:
               
chr1:6708900-6708559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
62, 109
               

               
Conread position:
               
191-501
               

               
Cow position:
               
chr1:100976722-100976418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
107, 30
               

               
Conread position:
               
203-520
               

               
Cow position:
               
chr1:40052572-40052890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
211-509
               

               
Cow position:
               
chr1:88130018-88130314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
215-504
               

               
Cow position:
               
chr1:94659136-94659424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr1:22000689-22000399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr1:58335099-58335389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr1:63606524-63606230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr1:76623690-76623392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr1:91893736-91893445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
217-508
               

               
Cow position:
               
chr1:72079743-72080034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
218-509
               

               
Cow position:
               
chr1:55775417-55775711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
224-508
               

               
Cow position:
               
chr1:62806534-62806251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 56
               

               
Conread position:
               
224-548
               

               
Cow position:
               
chr1:33711341-33711662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
227-508
               

               
Cow position:
               
chr1:101858684-101858407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
228-509
               

               
Cow position:
               
chr1:49974919-49974635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 50
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr1:28722103-28722375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr1:59672370-59672643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr1:69536220-69536490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr1:89900398-89900127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr1:97123135-97123407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
230-513
               

               
Cow position:
               
chr1:28802126-28801845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
230-544
               

               
Cow position:
               
chr1:101149137-101149441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
230-548
               

               
Cow position:
               
chr1:45096883-45097197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
230-548
               

               
Cow position:
               
chr1:87244087-87244400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr1:13645029-13645296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr1:57367859-57367579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
125, 66
               

               
Conread position:
               
235-439
               

               
Cow position:
               
chr1:74562368-74562568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
236-509
               

               
Cow position:
               
chr1:42289714-42289982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
236-509
               

               
Cow position:
               
chr1:88634683-88634952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
246-509
               

               
Cow position:
               
chr1:79336504-79336241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
246-548
               

               
Cow position:
               
chr1:82919346-82919048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
268-520
               

               
Cow position:
               
chr1:8027863-8027611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
284-509
               

               
Cow position:
               
chr1:18406840-18406616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
19, 6
               

               
Conread position:
               
285-509
               

               
Cow position:
               
chr1:38414170-38414393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
293-548
               

               
Cow position:
               
chr1:11863940-11863685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
115, 9
               

               
Conread position:
               
322-509
               

               
Cow position:
               
chr1:5501339-5501531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
322-509
               

               
Cow position:
               
chr1:42735817-42736010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
322-513
               

               
Cow position:
               
chr1:93853883-93854078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
322-513
               

               
Cow position:
               
chr1:99909923-99910114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 138
               

               
Conread position:
               
343-512
               

               
Cow position:
               
chr1:54366384-54366215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
343-544
               

               
Cow position:
               
chr1:69059829-69060024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
344-551
               

               
Cow position:
               
chr1:76703959-76703752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
345-535
               

               
Cow position:
               
chr1:72134825-72135015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-509
               

               
Cow position:
               
chr1:31344980-31344819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
347-533
               

               
Cow position:
               
chr1:61732453-61732630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
347-544
               

               
Cow position:
               
chr1:62854419-62854222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-548
               

               
Cow position:
               
chr1:40907514-40907712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
349-535
               

               
Cow position:
               
chr1:89478587-89478770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
91, 103
               

               
Conread position:
               
349-550
               

               
Cow position:
               
chr1:52323294-52323493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
350-509
               

               
Cow position:
               
chr1:52233682-52233523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
351-504
               

               
Cow position:
               
chr1:56194538-56194384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 150
               

               
Conread position:
               
357-535
               

               
Cow position:
               
chr1:34688759-34688932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
361-542
               

               
Cow position:
               
chr1:23050049-23050230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
361-548
               

               
Cow position:
               
chr1:25887721-25887537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
98, 90
               

               
Conread position:
               
386-552
               

               
Cow position:
               
chr1:37420544-37420381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
389-548
               

               
Cow position:
               
chr1:87208195-87208040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
549-842
               

               
Cow position:
               
chr1:21720397-21720693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
122, 57
               

               
Conread position:
               
549-935
               

               
Cow position:
               
chr1:22344118-22344485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
87, 34
               

               
Conread position:
               
549-1004
               

               
Cow position:
               
chr1:40512863-40512406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 46
               

               
Conread position:
               
549-1403
               

               
Cow position:
               
chr1:67287018-67287879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
882
               

               
Alignm identity:
               
638
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
552-1151
               

               
Cow position:
               
chr1:29033302-29033914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 55
               

               
Conread position:
               
552-1403
               

               
Cow position:
               
chr1:63502040-63502884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
868
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 354
               

               
Conread position:
               
559-1403
               

               
Cow position:
               
chr1:98659686-98658849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
871
               

               
Alignm identity:
               
593
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 47
               

               
Conread position:
               
560-1403
               

               
Cow position:
               
chr1:59647471-59648350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
891
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
567-1047
               

               
Cow position:
               
chr1:72943743-72944223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
567-1403
               

               
Cow position:
               
chr1:15026558-15027415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
872
               

               
Alignm identity:
               
592
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
605-1403
               

               
Cow position:
               
chr1:12061973-12061155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
831
               

               
Alignm identity:
               
601
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 131
               

               
Conread position:
               
606-956
               

               
Cow position:
               
chr1:31330152-31329796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
187, 50
               

               
Conread position:
               
607-958
               

               
Cow position:
               
chr1:88269978-88269617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 208
               

               
Conread position:
               
608-928
               

               
Cow position:
               
chr1:31421327-31421013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
608-976
               

               
Cow position:
               
chr1:18013255-18012891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
19, 60
               

               
Conread position:
               
612-1401
               

               
Cow position:
               
chr1:29609424-29608631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
816
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 125
               

               
Conread position:
               
612-1403
               

               
Cow position:
               
chr1:31811321-31812110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
821
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
617-1351
               

               
Cow position:
               
chr1:71741504-71740789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
619-1071
               

               
Cow position:
               
chr1:30518938-30519406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 161
               

               
Conread position:
               
619-1222
               

               
Cow position:
               
chr1:55321900-55321278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 215
               

               
Conread position:
               
619-1384
               

               
Cow position:
               
chr1:77111762-77111024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
774
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
623-1099
               

               
Cow position:
               
chr1:33389394-33389875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
645-1403
               

               
Cow position:
               
chr1:68607259-68606483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
650-802
               

               
Cow position:
               
chr1:57568249-57568396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
650-1400
               

               
Cow position:
               
chr1:94659979-94660729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 14
               

               
Conread position:
               
650-1403
               

               
Cow position:
               
chr1:33551221-33551985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
586
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 14
               

               
Conread position:
               
650-1403
               

               
Cow position:
               
chr1:93854818-93855575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 14
               

               
Conread position:
               
659-1151
               

               
Cow position:
               
chr1:102549540-102550016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
660-1110
               

               
Cow position:
               
chr1:69403279-69403738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
662-1403
               

               
Cow position:
               
chr1:8825351-8826106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
662-1403
               

               
Cow position:
               
chr1:21999656-21998898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
578
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
663-1403
               

               
Cow position:
               
chr1:23052091-23052822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
664-1030
               

               
Cow position:
               
chr1:20829191-20829558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 35
               

               
Conread position:
               
664-1101
               

               
Cow position:
               
chr1:9382246-9381807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
664-1330
               

               
Cow position:
               
chr1:39544071-39544752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
664-1382
               

               
Cow position:
               
chr1:91899298-91900055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 45
               

               
Conread position:
               
664-1384
               

               
Cow position:
               
chr1:80358879-80358137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 45
               

               
Conread position:
               
664-1385
               

               
Cow position:
               
chr1:17036255-17035561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr1:13450508-13451260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr1:21087715-21088471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 45
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr1:40574515-40575269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 45
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr1:69766764-69767509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr1:82652955-82653719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
665-935
               

               
Cow position:
               
chr1:85780478-85780204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
665-1012
               

               
Cow position:
               
chr1:85882304-85882649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
665-1062
               

               
Cow position:
               
chr1:86698915-86698511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
665-1400
               

               
Cow position:
               
chr1:72186579-72185826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 210
               

               
Conread position:
               
665-1403
               

               
Cow position:
               
chr1:3385718-3384966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 165
               

               
Conread position:
               
665-1403
               

               
Cow position:
               
chr1:48246147-48246895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 137
               

               
Conread position:
               
665-1403
               

               
Cow position:
               
chr1:58336137-58336896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
579
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
665-1403
               

               
Cow position:
               
chr1:69922136-69921376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
577
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
665-1403
               

               
Cow position:
               
chr1:79456670-79455896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 584
               

               
Conread position:
               
666-1404
               

               
Cow position:
               
chr1:22842945-22843700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 75
               

               
Conread position:
               
668-878
               

               
Cow position:
               
chr1:61309314-61309524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
668-1400
               

               
Cow position:
               
chr1:65386630-65387375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
668-1403
               

               
Cow position:
               
chr1:76545236-76544477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
569
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 199
               

               
Conread position:
               
669-1330
               

               
Cow position:
               
chr1:77511624-77510966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
669-1400
               

               
Cow position:
               
chr1:71562266-71561517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
583
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
670-1061
               

               
Cow position:
               
chr1:57366822-57366421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
670-1399
               

               
Cow position:
               
chr1:73070746-73070006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
557
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
670-1400
               

               
Cow position:
               
chr1:88131081-88131829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr1:25179720-25178970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
573
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 55
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr1:30534714-30533962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr1:56144028-56143278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr1:62244337-62243585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
579
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr1:63605475-63604715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
591
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 550
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr1:72081089-72081824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 88
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr1:91892813-91892060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
671-1403
               

               
Cow position:
               
chr1:28873385-28874139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
674-1403
               

               
Cow position:
               
chr1:32662047-32662785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
675-1400
               

               
Cow position:
               
chr1:29034605-29035331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
675-1400
               

               
Cow position:
               
chr1:56723458-56724230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
554
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
675-1400
               

               
Cow position:
               
chr1:57424535-57423781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
675-1403
               

               
Cow position:
               
chr1:67291944-67292689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
677-927
               

               
Cow position:
               
chr1:89770349-89770095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
677-1067
               

               
Cow position:
               
chr1:18027455-18027047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
677-1403
               

               
Cow position:
               
chr1:22905095-22905809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 93
               

               
Conread position:
               
679-935
               

               
Cow position:
               
chr1:72981584-72981843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
682-1063
               

               
Cow position:
               
chr1:58883751-58883358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 19
               

               
Conread position:
               
682-1117
               

               
Cow position:
               
chr1:31403179-31402732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
31, 234
               

               
Conread position:
               
682-1135
               

               
Cow position:
               
chr1:97226395-97225934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 259
               

               
Conread position:
               
682-1399
               

               
Cow position:
               
chr1:79636618-79635927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
682-1400
               

               
Cow position:
               
chr1:42736768-42737513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
578
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 572
               

               
Conread position:
               
682-1403
               

               
Cow position:
               
chr1:49973874-49973129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
683-1403
               

               
Cow position:
               
chr1:31365766-31365040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 185
               

               
Conread position:
               
683-1403
               

               
Cow position:
               
chr1:82923862-82923128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
557
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 195
               

               
Conread position:
               
688-1403
               

               
Cow position:
               
chr1:17941465-17940739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 190
               

               
Conread position:
               
701-1382
               

               
Cow position:
               
chr1:66999361-67000048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 41
               

               
Conread position:
               
703-1329
               

               
Cow position:
               
chr1:76752309-76751665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 579
               

               
Conread position:
               
703-1384
               

               
Cow position:
               
chr1:86547798-86547102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
703-1400
               

               
Cow position:
               
chr1:40684353-40683686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
703-1403
               

               
Cow position:
               
chr1:52358933-52358200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
569
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 22
               

               
Conread position:
               
704-894
               

               
Cow position:
               
chr1:30283204-30283015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1012
               

               
Cow position:
               
chr1:18880054-18879743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1214
               

               
Cow position:
               
chr1:40053694-40054223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1349
               

               
Cow position:
               
chr1:56490189-56490855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1357
               

               
Cow position:
               
chr1:82564842-82565513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 575
               

               
Conread position:
               
704-1398
               

               
Cow position:
               
chr1:89425912-89426625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:5355465-5356182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:8554667-8555385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:11291767-11291058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:17012400-17011678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:28711255-28711947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:31397029-31397748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 577
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:60339644-60340356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:67834802-67834078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:82912805-82912082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr1:85792025-85792734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1403
               

               
Cow position:
               
chr1:53198888-53199597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
712-890
               

               
Cow position:
               
chr1:33712419-33712596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
712-1065
               

               
Cow position:
               
chr1:67327912-67327563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
265, 93
               

               
Conread position:
               
712-1183
               

               
Cow position:
               
chr1:82366532-82367018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 39
               

               
Conread position:
               
712-1403
               

               
Cow position:
               
chr1:43571055-43570357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 78
               

               
Conread position:
               
712-1403
               

               
Cow position:
               
chr1:102434686-102433982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 252
               

               
Conread position:
               
713-1400
               

               
Cow position:
               
chr1:99913770-99914481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
715-1267
               

               
Cow position:
               
chr1:34692581-34693123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 82
               

               
Conread position:
               
725-837
               

               
Cow position:
               
chr1:76622541-76622429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
725-1400
               

               
Cow position:
               
chr1:5502331-5503022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 319
               

               
Conread position:
               
735-1400
               

               
Cow position:
               
chr1:26518511-26517832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 135
               

               
Conread position:
               
735-1403
               

               
Cow position:
               
chr1:43985705-43985022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 55
               

               
Conread position:
               
737-895
               

               
Cow position:
               
chr1:99675357-99675202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
737-1266
               

               
Cow position:
               
chr1:52325761-52325232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
232, 69
               

               
Conread position:
               
739-1400
               

               
Cow position:
               
chr1:56163924-56164612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 35
               

               
Conread position:
               
740-1055
               

               
Cow position:
               
chr1:91751088-91750766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 0
               

               
Conread position:
               
740-1063
               

               
Cow position:
               
chr1:57657185-57657503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 21
               

               
Conread position:
               
740-1145
               

               
Cow position:
               
chr1:28278347-28278755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
68, 129
               

               
Conread position:
               
740-1238
               

               
Cow position:
               
chr1:95239744-95240262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 185
               

               
Conread position:
               
740-1400
               

               
Cow position:
               
chr1:29362671-29363349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 158
               

               
Conread position:
               
740-1400
               

               
Cow position:
               
chr1:59209776-59209094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 0
               

               
Conread position:
               
740-1403
               

               
Cow position:
               
chr1:88375385-88374749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
740-1403
               

               
Cow position:
               
chr1:91598284-91597638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
276, 49
               

               
Conread position:
               
741-997
               

               
Cow position:
               
chr1:69250660-69250925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
65, 191
               

               
Conread position:
               
741-1097
               

               
Cow position:
               
chr1:80665239-80665582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
151, 68
               

               
Conread position:
               
741-1403
               

               
Cow position:
               
chr1:21691856-21691176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
742-967
               

               
Cow position:
               
chr1:18242956-18242734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
154, 128
               

               
Conread position:
               
742-999
               

               
Cow position:
               
chr1:24651662-24651923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 0
               

               
Conread position:
               
742-1401
               

               
Cow position:
               
chr1:31418134-31417447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 65
               

               
Conread position:
               
744-1403
               

               
Cow position:
               
chr1:25550344-25551020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 175
               

               
Conread position:
               
751-1226
               

               
Cow position:
               
chr1:89481177-89481647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 116
               

               
Conread position:
               
751-1400
               

               
Cow position:
               
chr1:33851671-33852343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 530
               

               
Conread position:
               
751-1403
               

               
Cow position:
               
chr1:55156615-55155943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 401
               

               
Conread position:
               
754-1371
               

               
Cow position:
               
chr1:11860846-11860225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 137
               

               
Conread position:
               
758-1199
               

               
Cow position:
               
chr1:84150593-84151045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 144
               

               
Conread position:
               
759-1199
               

               
Cow position:
               
chr1:40308669-40309115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
390, 275
               

               
Conread position:
               
767-1209
               

               
Cow position:
               
chr1:21936638-21936185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
781-1145
               

               
Cow position:
               
chr1:57263404-57263762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
782-1403
               

               
Cow position:
               
chr1:16217234-16216617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 74
               

               
Conread position:
               
782-1403
               

               
Cow position:
               
chr1:55777002-55777642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 28
               

               
Conread position:
               
796-1046
               

               
Cow position:
               
chr1:58178554-58178300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
175, 88
               

               
Conread position:
               
796-1403
               

               
Cow position:
               
chr1:57973234-57972647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 222
               

               
Conread position:
               
810-1400
               

               
Cow position:
               
chr1:44044227-44044838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 470
               

               
Conread position:
               
810-1403
               

               
Cow position:
               
chr1:6194684-6195293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 167
               

               
Conread position:
               
815-1400
               

               
Cow position:
               
chr1:9258946-9259534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 221
               

               
Conread position:
               
815-1404
               

               
Cow position:
               
chr1:1460734-1460137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 145
               

               
Conread position:
               
820-1395
               

               
Cow position:
               
chr1:57568391-57568983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 460
               

               
Conread position:
               
826-1403
               

               
Cow position:
               
chr1:86610609-86611200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 73
               

               
Conread position:
               
837-1383
               

               
Cow position:
               
chr1:33896214-33896779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 443
               

               
Conread position:
               
841-1403
               

               
Cow position:
               
chr1:50942789-50942220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
93, 84
               

               
Conread position:
               
844-1403
               

               
Cow position:
               
chr1:76621204-76620625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
850-1403
               

               
Cow position:
               
chr1:24443835-24443271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 51
               

               
Conread position:
               
851-1097
               

               
Cow position:
               
chr1:77117081-77116831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 125
               

               
Conread position:
               
870-1403
               

               
Cow position:
               
chr1:79110998-79111547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
871-1147
               

               
Cow position:
               
chr1:101862381-101862103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
23, 49
               

               
Conread position:
               
883-1139
               

               
Cow position:
               
chr1:29979662-29979406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
46, 55
               

               
Conread position:
               
885-1403
               

               
Cow position:
               
chr1:31358963-31359467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 106
               

               
Conread position:
               
891-1359
               

               
Cow position:
               
chr1:88213265-88212781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
910-1257
               

               
Cow position:
               
chr1:33712639-33713007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
910-1403
               

               
Cow position:
               
chr1:58200942-58200451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
911-1404
               

               
Cow position:
               
chr1:44100846-44100338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 55
               

               
Conread position:
               
913-1403
               

               
Cow position:
               
chr1:57662570-57663084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
915-1403
               

               
Cow position:
               
chr1:18139901-18139399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 98
               

               
Conread position:
               
919-1403
               

               
Cow position:
               
chr1:91446036-91446520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
924-1150
               

               
Cow position:
               
chr1:47541191-47541417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
54, 151
               

               
Conread position:
               
933-1403
               

               
Cow position:
               
chr1:62805601-62805121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
934-1403
               

               
Cow position:
               
chr1:22344656-22345136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
943-1403
               

               
Cow position:
               
chr1:72984085-72984556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
944-1385
               

               
Cow position:
               
chr1:98785292-98785741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
63, 142
               

               
Conread position:
               
945-1403
               

               
Cow position:
               
chr1:72038971-72038511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 85
               

               
Conread position:
               
980-1403
               

               
Cow position:
               
chr1:18241893-18241461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 261
               

               
Conread position:
               
984-1150
               

               
Cow position:
               
chr1:20423107-20422938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
984-1250
               

               
Cow position:
               
chr1:49495602-49495319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
991-1293
               

               
Cow position:
               
chr1:88564170-88563856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 15
               

               
Conread position:
               
991-1387
               

               
Cow position:
               
chr1:81863874-81863463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 289
               

               
Conread position:
               
993-1125
               

               
Cow position:
               
chr1:86597056-86596921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
997-1403
               

               
Cow position:
               
chr1:85779802-85779388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 242
               

               
Conread position:
               
1004-1403
               

               
Cow position:
               
chr1:24651962-24652334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
1005-1403
               

               
Cow position:
               
chr1:31328845-31328441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
146, 48
               

               
Conread position:
               
1006-1400
               

               
Cow position:
               
chr1:61309867-61310276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 267
               

               
Conread position:
               
1006-1403
               

               
Cow position:
               
chr1:27178825-27178406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 367
               

               
Conread position:
               
1006-1403
               

               
Cow position:
               
chr1:40512367-40511955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 329
               

               
Conread position:
               
1007-1403
               

               
Cow position:
               
chr1:89770061-89769657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 227
               

               
Conread position:
               
1025-1213
               

               
Cow position:
               
chr1:22620262-22620057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1025-1385
               

               
Cow position:
               
chr1:20829577-20829942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 249
               

               
Conread position:
               
1025-1403
               

               
Cow position:
               
chr1:72944465-72944826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
1030-1402
               

               
Cow position:
               
chr1:38416561-38416934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 239
               

               
Conread position:
               
1034-1385
               

               
Cow position:
               
chr1:102812861-102813218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
117, 12
               

               
Conread position:
               
1034-1403
               

               
Cow position:
               
chr1:88269561-88269173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1044-1403
               

               
Cow position:
               
chr1:7142104-7141730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
73, 168
               

               
Conread position:
               
1045-1403
               

               
Cow position:
               
chr1:30283013-30282641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 228
               

               
Conread position:
               
1051-1403
               

               
Cow position:
               
chr1:39540244-39539879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
48, 53
               

               
Conread position:
               
1051-1403
               

               
Cow position:
               
chr1:58883090-58882724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 88
               

               
Conread position:
               
1052-1276
               

               
Cow position:
               
chr1:18015970-18016201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
99, 130
               

               
Conread position:
               
1052-1403
               

               
Cow position:
               
chr1:32908517-32908877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
97, 158
               

               
Conread position:
               
1059-1376
               

               
Cow position:
               
chr1:67327205-67326893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
123, 92
               

               
Conread position:
               
1059-1402
               

               
Cow position:
               
chr1:30063090-30063431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
94, 19
               

               
Conread position:
               
1062-1403
               

               
Cow position:
               
chr1:99019308-99018951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1063-1403
               

               
Cow position:
               
chr1:57657593-57657946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 53
               

               
Conread position:
               
1069-1401
               

               
Cow position:
               
chr1:20081203-20080887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
111, 52
               

               
Conread position:
               
1101-1376
               

               
Cow position:
               
chr1:10014168-10013893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
1102-1400
               

               
Cow position:
               
chr1:31402714-31402408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
1103-1403
               

               
Cow position:
               
chr1:57697411-57697107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 135
               

               
Conread position:
               
1105-1400
               

               
Cow position:
               
chr1:55276278-55275978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
1106-1403
               

               
Cow position:
               
chr1:18027050-18026740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1110-1403
               

               
Cow position:
               
chr1:78922875-78923156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
1120-1400
               

               
Cow position:
               
chr1:69403773-69404061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1127-1400
               

               
Cow position:
               
chr1:86595727-86595441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 146
               

               
Conread position:
               
1148-1403
               

               
Cow position:
               
chr1:102781498-102781238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 226
               

               
Conread position:
               
1154-1400
               

               
Cow position:
               
chr1:9381797-9381548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
1155-1325
               

               
Cow position:
               
chr1:29979126-29978949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1161-1360
               

               
Cow position:
               
chr1:81927691-81927496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
1161-1400
               

               
Cow position:
               
chr1:56193356-56193115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
1161-1402
               

               
Cow position:
               
chr1:53364369-53364614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
1161-1403
               

               
Cow position:
               
chr1:74285978-74285731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1169-1402
               

               
Cow position:
               
chr1:24205331-24205097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
1169-1403
               

               
Cow position:
               
chr1:61730726-61730497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 92
               

               
Conread position:
               
1170-1375
               

               
Cow position:
               
chr1:2543600-2543392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1170-1400
               

               
Cow position:
               
chr1:20525300-20525532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
66, 48
               

               
Conread position:
               
1178-1401
               

               
Cow position:
               
chr1:67079489-67079270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1180-1403
               

               
Cow position:
               
chr1:30539505-30539280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
1187-1403
               

               
Cow position:
               
chr1:7409551-7409334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
1196-1403
               

               
Cow position:
               
chr1:73198174-73197965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1197-1403
               

               
Cow position:
               
chr1:70419533-70419322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
1202-1398
               

               
Cow position:
               
chr1:40054492-40054689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
1206-1403
               

               
Cow position:
               
chr1:77115842-77115644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1216-1403
               

               
Cow position:
               
chr1:55321202-55321015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 156
               

               
Conread position:
               
1230-1403
               

               
Cow position:
               
chr1:30519477-30519656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
117, 66
               

               
Conread position:
               
1237-1385
               

               
Cow position:
               
chr1:30222386-30222534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1237-1403
               

               
Cow position:
               
chr1:99315168-99315331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
135, 114
               

               
Conread position:
               
1237-1404
               

               
Cow position:
               
chr1:85532723-85532559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1240-1401
               

               
Cow position:
               
chr1:38419571-38419727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1240-1403
               

               
Cow position:
               
chr1:101861166-101861006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1251-1403
               

               
Cow position:
               
chr1:76703379-76703227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 142
               

               
Conread position:
               
1256-1402
               

               
Cow position:
               
chr1:89481635-89481779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1258-1399
               

               
Cow position:
               
chr1:3934347-3934206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1262-1403
               

               
Cow position:
               
chr1:71442636-71442774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
1267-1403
               

               
Cow position:
               
chr1:34693612-34693743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1279-1403
               

               
Cow position:
               
chr1:22619703-22619580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1291-1403
               

               
Cow position:
               
chr1:32566975-32566863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.