Cow genome map

Conread name: Ss1.1-Pig4-TMW8055M19.3

Conread position: 31-548
Cow position: chr25:18276777-18276257 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 80

Conread position: 52-301
Cow position: chr25:18091984-18092235 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 87, 42

Conread position: 63-632
Cow position: chr25:18172415-18172995 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 21

Conread position: 74-520
Cow position: chr25:19916167-19916613 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 292
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 68, 41

Conread position: 92-520
Cow position: chr25:32579077-32579509 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 281
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 60, 24

Conread position: 98-520
Cow position: chr25:26921330-26921755 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 18

Conread position: 98-525
Cow position: chr25:20777811-20777381 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 276
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 48, 18

Conread position: 98-548
Cow position: chr25:17590426-17589970 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 292
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 44, 17

Conread position: 123-520
Cow position: chr25:32979906-32979511 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 258
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 46

Conread position: 164-520
Cow position: chr25:33991864-33991506 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 79, 129

Conread position: 164-520
Cow position: chr25:35363253-35362895 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 234
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 79, 126

Conread position: 167-555
Cow position: chr25:18412029-18411659 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 57

Conread position: 169-505
Cow position: chr25:34347780-34347447 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 222
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 60, 27

Conread position: 178-509
Cow position: chr25:12944518-12944197 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 221
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 125, 18

Conread position: 180-504
Cow position: chr25:8674155-8674470 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 16

Conread position: 230-509
Cow position: chr25:18028328-18028057 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 192
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 55, 37

Conread position: 230-509
Cow position: chr25:18061300-18061026 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 74, 37

Conread position: 230-509
Cow position: chr25:18302043-18302320 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 79

Conread position: 230-562
Cow position: chr25:11376062-11375738 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 37

Conread position: 233-505
Cow position: chr25:18890730-18890471 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 185
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 70, 47

Conread position: 233-509
Cow position: chr25:13780311-13780584 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 70, 47

Conread position: 263-520
Cow position: chr25:15443662-15443919 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 171
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 12

Conread position: 298-555
Cow position: chr25:17469353-17469092 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 132, 48

Conread position: 349-527
Cow position: chr25:18092400-18092577 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 361-535
Cow position: chr25:23346296-23346124 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 62, 140

Conread position: 365-548
Cow position: chr25:17561208-17561019 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 43, 50

Conread position: 545-892
Cow position: chr25:18094376-18094724 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 129, 61

Conread position: 549-1071
Cow position: chr25:18254788-18254276 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 348
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 41, 79

Conread position: 559-1052
Cow position: chr25:11932924-11932415 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 75

Conread position: 564-1097
Cow position: chr25:18422230-18422752 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 351
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 39, 77

Conread position: 568-970
Cow position: chr25:3378149-3377753 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 264
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 31, 98

Conread position: 595-1403
Cow position: chr25:24217223-24216407 (view UCSC Genome Browser custom track)
Alignm length: 840
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 236

Conread position: 610-1402
Cow position: chr25:18152892-18153680 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 509
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 75, 11

Conread position: 611-855
Cow position: chr25:33665449-33665192 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 27

Conread position: 641-1055
Cow position: chr25:18274715-18274289 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 396

Conread position: 660-971
Cow position: chr25:17560349-17560033 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 23

Conread position: 662-1043
Cow position: chr25:8675210-8675599 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 17

Conread position: 664-1086
Cow position: chr25:18194804-18194380 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 45

Conread position: 664-1385
Cow position: chr25:17589260-17588520 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 44

Conread position: 668-960
Cow position: chr25:9544360-9544653 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 130

Conread position: 668-1403
Cow position: chr25:26879494-26880238 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 34

Conread position: 669-1211
Cow position: chr25:18303700-18304256 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 670-1047
Cow position: chr25:18889712-18889330 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 8

Conread position: 670-1403
Cow position: chr25:12942397-12941618 (view UCSC Genome Browser custom track)
Alignm length: 785
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 8

Conread position: 677-1341
Cow position: chr25:32580271-32580948 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 679-1114
Cow position: chr25:34014178-34013728 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 682-1113
Cow position: chr25:24659562-24659996 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 135

Conread position: 682-1300
Cow position: chr25:26279568-26280195 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 703-1052
Cow position: chr25:19917414-19917770 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 38

Conread position: 703-1400
Cow position: chr25:13781367-13782085 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 0

Conread position: 703-1403
Cow position: chr25:34346680-34345959 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 100

Conread position: 704-845
Cow position: chr25:35362098-35361957 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 37

Conread position: 704-1150
Cow position: chr25:6172234-6172687 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 37

Conread position: 712-1083
Cow position: chr25:33244609-33244965 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 42

Conread position: 714-882
Cow position: chr25:23344552-23344384 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 714-1073
Cow position: chr25:27365205-27365574 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 244
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 20, 11

Conread position: 725-840
Cow position: chr25:25507028-25507142 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 727-1400
Cow position: chr25:22147899-22148591 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 99

Conread position: 731-1377
Cow position: chr25:19020968-19020324 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 396
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 126, 75

Conread position: 739-1395
Cow position: chr25:12758716-12758041 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 67

Conread position: 740-1065
Cow position: chr25:20775553-20775235 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 0

Conread position: 740-1251
Cow position: chr25:11832053-11831525 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 337
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 60

Conread position: 740-1385
Cow position: chr25:27022196-27021548 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 120

Conread position: 741-1182
Cow position: chr25:33258035-33258456 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 296
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 235, 44

Conread position: 743-1150
Cow position: chr25:13550660-13550246 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 0

Conread position: 746-1298
Cow position: chr25:40918780-40918227 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 82

Conread position: 751-969
Cow position: chr25:14958466-14958248 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 145
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 193

Conread position: 759-1145
Cow position: chr25:18175670-18176057 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 51

Conread position: 775-1403
Cow position: chr25:39558013-39557381 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 18

Conread position: 781-1403
Cow position: chr25:20630045-20630684 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 826-1362
Cow position: chr25:46205-46726 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 332
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 144, 99

Conread position: 853-1112
Cow position: chr25:33664737-33664470 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 81, 0

Conread position: 854-1403
Cow position: chr25:25507188-25507755 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 437

Conread position: 862-1403
Cow position: chr25:4760126-4759597 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 340
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 109, 57

Conread position: 863-1401
Cow position: chr25:35087431-35086895 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 353
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 73, 8

Conread position: 873-1108
Cow position: chr25:30265884-30266117 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 46, 32

Conread position: 875-1400
Cow position: chr25:18326374-18325859 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 325
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 95, 137

Conread position: 984-1403
Cow position: chr25:17559932-17559497 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 99

Conread position: 989-1341
Cow position: chr25:33050383-33050024 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 231
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 330

Conread position: 1002-1385
Cow position: chr25:26246418-26246023 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 255
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 19, 63

Conread position: 1042-1216
Cow position: chr25:19917792-19917979 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 107, 0

Conread position: 1043-1403
Cow position: chr25:18182416-18182778 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 106, 232

Conread position: 1043-1403
Cow position: chr25:18274088-18273717 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 197

Conread position: 1051-1403
Cow position: chr25:18889055-18888689 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 1092-1403
Cow position: chr25:3377498-3377176 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 7, 12

Conread position: 1094-1400
Cow position: chr25:18193031-18192712 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 179

Conread position: 1101-1403
Cow position: chr25:18450058-18450379 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 48, 145

Conread position: 1118-1403
Cow position: chr25:24659443-24659148 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 14

Conread position: 1154-1400
Cow position: chr25:20774574-20774323 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 111

Conread position: 1163-1403
Cow position: chr25:26928124-26928357 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 107

Conread position: 1174-1395
Cow position: chr25:24947282-24947061 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 10, 37

Conread position: 1180-1384
Cow position: chr25:36636855-36636652 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 56, 199

Conread position: 1193-1401
Cow position: chr25:27525295-27525092 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 142

Conread position: 1196-1402
Cow position: chr25:33259272-33259471 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 81

Conread position: 1196-1403
Cow position: chr25:37466094-37466293 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 14, 35

Conread position: 1205-1403
Cow position: chr25:37973869-37974062 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 103

Conread position: 1210-1403
Cow position: chr25:18305011-18305202 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 26, 51

Conread position: 1220-1384
Cow position: chr25:32156545-32156379 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 1239-1403
Cow position: chr25:11831190-11831027 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 146, 41

Conread position: 1242-1400
Cow position: chr25:18177590-18177748 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.