Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8055M19.3 |
| Conread position: | 31-363 |
| Cow position: | chr27:5060604-5060293 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 203, 37 |
| Conread position: | 37-270 |
| Cow position: | chr27:25116325-25116557 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 74-548 |
| Cow position: | chr27:2363775-2364253 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 107-550 |
| Cow position: | chr27:26556870-26556441 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 163-512 |
| Cow position: | chr27:25805720-25805371 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 129 |
| Conread position: | 164-497 |
| Cow position: | chr27:23334332-23334656 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 169-509 |
| Cow position: | chr27:26323982-26324318 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 178-488 |
| Cow position: | chr27:892397-892697 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 178-509 |
| Cow position: | chr27:14461279-14460952 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 178-509 |
| Cow position: | chr27:27662075-27662398 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 190-465 |
| Cow position: | chr27:15881649-15881372 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 87 |
| Conread position: | 230-509 |
| Cow position: | chr27:27050919-27051193 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 230-548 |
| Cow position: | chr27:5985860-5985555 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 230-562 |
| Cow position: | chr27:16438578-16438904 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 233-488 |
| Cow position: | chr27:9993963-9993710 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 70, 47 |
| Conread position: | 233-509 |
| Cow position: | chr27:1208585-1208861 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 46 |
| Conread position: | 236-509 |
| Cow position: | chr27:27307635-27307901 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 236-548 |
| Cow position: | chr27:25003260-25002964 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 238-562 |
| Cow position: | chr27:16431738-16432045 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 247-509 |
| Cow position: | chr27:15639266-15639006 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 260-546 |
| Cow position: | chr27:15331277-15331547 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 48 |
| Conread position: | 271-509 |
| Cow position: | chr27:5910126-5910371 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 32, 228 |
| Conread position: | 321-520 |
| Cow position: | chr27:16035106-16034907 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-548 |
| Cow position: | chr27:15279222-15279083 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 526-972 |
| Cow position: | chr27:27498711-27499147 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 116, 20 |
| Conread position: | 547-1404 |
| Cow position: | chr27:26555525-26554663 (view UCSC Genome Browser custom track) |
| Alignm length: | 888 |
| Alignm identity: | 653 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 601-1084 |
| Cow position: | chr27:15638185-15637691 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 617-832 |
| Cow position: | chr27:8567916-8568144 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 628-1222 |
| Cow position: | chr27:15123152-15123761 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 408 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 16, 146 |
| Conread position: | 636-929 |
| Cow position: | chr27:1138613-1138898 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 661-1403 |
| Cow position: | chr27:6014044-6014800 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 495 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 665-1403 |
| Cow position: | chr27:14460203-14459443 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 619 |
| Conread position: | 666-1404 |
| Cow position: | chr27:28891853-28892606 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 667-1020 |
| Cow position: | chr27:15277812-15277454 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 201 |
| Conread position: | 670-1221 |
| Cow position: | chr27:893468-894040 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 670-1403 |
| Cow position: | chr27:9329979-9330741 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 671-1403 |
| Cow position: | chr27:1209613-1210364 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 673-1394 |
| Cow position: | chr27:25804644-25803899 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 675-1400 |
| Cow position: | chr27:16034131-16033387 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 679-1403 |
| Cow position: | chr27:23335431-23336168 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 426 |
| Conread position: | 680-1403 |
| Cow position: | chr27:9992937-9992191 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 319 |
| Conread position: | 682-1403 |
| Cow position: | chr27:28078714-28079443 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 131 |
| Conread position: | 703-1367 |
| Cow position: | chr27:15541617-15542302 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 712-1403 |
| Cow position: | chr27:5911165-5911877 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 537 |
| Conread position: | 715-1325 |
| Cow position: | chr27:3643939-3643318 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 406 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 213 |
| Conread position: | 725-968 |
| Cow position: | chr27:27663258-27663501 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 731-1147 |
| Cow position: | chr27:16612595-16612179 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 735-1150 |
| Cow position: | chr27:15046496-15046914 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 49 |
| Conread position: | 735-1403 |
| Cow position: | chr27:15037265-15036585 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 283 |
| Conread position: | 740-928 |
| Cow position: | chr27:28080629-28080810 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 740-1231 |
| Cow position: | chr27:27752871-27752375 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 137 |
| Conread position: | 743-968 |
| Cow position: | chr27:22148405-22148628 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 744-1403 |
| Cow position: | chr27:26325402-26326082 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 0 |
| Conread position: | 746-938 |
| Cow position: | chr27:22318083-22318275 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 810-1377 |
| Cow position: | chr27:24215212-24215781 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 367 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 167, 137 |
| Conread position: | 810-1403 |
| Cow position: | chr27:27414266-27414887 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 115 |
| Conread position: | 824-1403 |
| Cow position: | chr27:27196192-27195625 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 43 |
| Conread position: | 910-1403 |
| Cow position: | chr27:3235042-3234532 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 300 |
| Conread position: | 915-1376 |
| Cow position: | chr27:22672840-22673318 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 18 |
| Conread position: | 920-1389 |
| Cow position: | chr27:23725497-23725028 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 938-1400 |
| Cow position: | chr27:11095330-11095810 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 340 |
| Conread position: | 939-1316 |
| Cow position: | chr27:21287343-21286943 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 39, 76 |
| Conread position: | 977-1303 |
| Cow position: | chr27:27663538-27663876 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 297 |
| Conread position: | 984-1403 |
| Cow position: | chr27:26036203-26035781 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 1000-1400 |
| Cow position: | chr27:30273615-30273198 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 277 |
| Conread position: | 1102-1403 |
| Cow position: | chr27:15636653-15636338 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1145-1403 |
| Cow position: | chr27:27506898-27507157 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1152-1403 |
| Cow position: | chr27:16551214-16551453 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 1152-1403 |
| Cow position: | chr27:29854107-29854360 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 1178-1403 |
| Cow position: | chr27:13898110-13898330 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 60, 88 |
| Conread position: | 1241-1403 |
| Cow position: | chr27:27752264-27752103 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1266-1403 |
| Cow position: | chr27:1677699-1677562 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1308-1403 |
| Cow position: | chr27:27663912-27664007 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.