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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8055M19.3
        

               
Conread position:
               
5-548
               

               
Cow position:
               
chr5:49594635-49594093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 27
               

               
Conread position:
               
31-546
               

               
Cow position:
               
chr5:61274321-61273801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 81
               

               
Conread position:
               
32-529
               

               
Cow position:
               
chr5:10845055-10844556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 46
               

               
Conread position:
               
33-520
               

               
Cow position:
               
chr5:32771296-32771791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
113, 41
               

               
Conread position:
               
34-524
               

               
Cow position:
               
chr5:3963295-3963785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr5:46631685-46631424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr5:12645232-12644779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
188, 19
               

               
Conread position:
               
58-301
               

               
Cow position:
               
chr5:27061751-27061503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 53
               

               
Conread position:
               
65-548
               

               
Cow position:
               
chr5:41530682-41530203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
73-548
               

               
Cow position:
               
chr5:41964035-41963565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
74-520
               

               
Cow position:
               
chr5:46774952-46775401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
74-520
               

               
Cow position:
               
chr5:47832234-47831784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
74-540
               

               
Cow position:
               
chr5:10444339-10443873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
87-520
               

               
Cow position:
               
chr5:27910395-27909959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 28
               

               
Conread position:
               
98-411
               

               
Cow position:
               
chr5:35996553-35996234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
98-504
               

               
Cow position:
               
chr5:10777360-10776952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr5:4020302-4019889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr5:4087758-4088180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr5:23961222-23960799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr5:48469390-48468963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr5:53714138-53714565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr5:54936627-54936200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
106-561
               

               
Cow position:
               
chr5:29456548-29457007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 193
               

               
Conread position:
               
116-497
               

               
Cow position:
               
chr5:45183205-45182819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 172
               

               
Conread position:
               
123-520
               

               
Cow position:
               
chr5:14379075-14379477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 171
               

               
Conread position:
               
163-514
               

               
Cow position:
               
chr5:28006216-28006566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
164-520
               

               
Cow position:
               
chr5:308628-308270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
164-520
               

               
Cow position:
               
chr5:18663197-18663556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 119
               

               
Conread position:
               
164-520
               

               
Cow position:
               
chr5:35298734-35299090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
79, 130
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chr5:4384212-4384557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
166-548
               

               
Cow position:
               
chr5:23716956-23716583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
172-520
               

               
Cow position:
               
chr5:42503723-42504073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 118
               

               
Conread position:
               
177-548
               

               
Cow position:
               
chr5:32674744-32674366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 200
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr5:3784823-3785142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr5:12184237-12184574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr5:57483535-57483208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
179-509
               

               
Cow position:
               
chr5:2431137-2430801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 103
               

               
Conread position:
               
181-520
               

               
Cow position:
               
chr5:31705547-31705886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
189-520
               

               
Cow position:
               
chr5:13384303-13383971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
54, 88
               

               
Conread position:
               
194-485
               

               
Cow position:
               
chr5:32944901-32945190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
196-520
               

               
Cow position:
               
chr5:46662990-46663314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
197-522
               

               
Cow position:
               
chr5:37756155-37755828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr5:14501108-14500816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr5:54793577-54793287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr5:55627045-55627335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
217-509
               

               
Cow position:
               
chr5:49120236-49119945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
226-509
               

               
Cow position:
               
chr5:32734167-32733889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
226-538
               

               
Cow position:
               
chr5:12682455-12682143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
227-509
               

               
Cow position:
               
chr5:49181363-49181638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
58, 40
               

               
Conread position:
               
230-508
               

               
Cow position:
               
chr5:25207721-25207458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr5:41551842-41551565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr5:52804420-52804686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
230-548
               

               
Cow position:
               
chr5:45699090-45699400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
230-562
               

               
Cow position:
               
chr5:34202028-34202345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
233-483
               

               
Cow position:
               
chr5:25916768-25917006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
233-504
               

               
Cow position:
               
chr5:10917858-10918129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr5:27569265-27569537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
52, 34
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr5:29008446-29008717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
236-548
               

               
Cow position:
               
chr5:27652884-27652582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
239-553
               

               
Cow position:
               
chr5:46658775-46659076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 92
               

               
Conread position:
               
243-519
               

               
Cow position:
               
chr5:58195038-58195310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
68, 40
               

               
Conread position:
               
246-509
               

               
Cow position:
               
chr5:49123756-49123496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr5:2913522-2913782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr5:34695656-34695917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr5:64782945-64782684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
270-548
               

               
Cow position:
               
chr5:26768914-26769192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
282-509
               

               
Cow position:
               
chr5:39165664-39165438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
290-509
               

               
Cow position:
               
chr5:24097763-24097981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 118
               

               
Conread position:
               
296-509
               

               
Cow position:
               
chr5:13607642-13607428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
297-509
               

               
Cow position:
               
chr5:55150150-55149942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
6, 42
               

               
Conread position:
               
322-509
               

               
Cow position:
               
chr5:30578467-30578656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 149
               

               
Conread position:
               
336-505
               

               
Cow position:
               
chr5:48809553-48809383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 165
               

               
Conread position:
               
338-520
               

               
Cow position:
               
chr5:2530403-2530585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
341-535
               

               
Cow position:
               
chr5:24151238-24151433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 162
               

               
Conread position:
               
347-562
               

               
Cow position:
               
chr5:28030684-28030886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
349-535
               

               
Cow position:
               
chr5:27060900-27060722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
352-531
               

               
Cow position:
               
chr5:58747064-58747241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
361-548
               

               
Cow position:
               
chr5:27000387-27000571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
549-841
               

               
Cow position:
               
chr5:41961970-41961684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
119, 57
               

               
Conread position:
               
549-1022
               

               
Cow position:
               
chr5:46660010-46660472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 79
               

               
Conread position:
               
549-1375
               

               
Cow position:
               
chr5:41528793-41527965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
855
               

               
Alignm identity:
               
629
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 57
               

               
Conread position:
               
553-829
               

               
Cow position:
               
chr5:61272584-61272301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
114, 30
               

               
Conread position:
               
559-803
               

               
Cow position:
               
chr5:25000245-25000001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
559-830
               

               
Cow position:
               
chr5:18272511-18272792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
66, 5
               

               
Conread position:
               
559-1066
               

               
Cow position:
               
chr5:32309638-32309111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
560-1392
               

               
Cow position:
               
chr5:35525784-35526622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
865
               

               
Alignm identity:
               
603
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 23
               

               
Conread position:
               
564-1393
               

               
Cow position:
               
chr5:41957346-41956545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
846
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 121
               

               
Conread position:
               
567-1345
               

               
Cow position:
               
chr5:28023490-28024289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
816
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
567-1403
               

               
Cow position:
               
chr5:14785392-14784535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
876
               

               
Alignm identity:
               
607
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
605-928
               

               
Cow position:
               
chr5:41358068-41357746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
607-1162
               

               
Cow position:
               
chr5:32154867-32154318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
608-1375
               

               
Cow position:
               
chr5:47894514-47893730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
609-1063
               

               
Cow position:
               
chr5:14658634-14658165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
615-845
               

               
Cow position:
               
chr5:27058704-27058480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 97
               

               
Conread position:
               
615-1148
               

               
Cow position:
               
chr5:29435537-29435037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
619-1402
               

               
Cow position:
               
chr5:27002065-27002841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
803
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
623-1058
               

               
Cow position:
               
chr5:39246975-39246529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
632-1244
               

               
Cow position:
               
chr5:31101574-31100950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
650-899
               

               
Cow position:
               
chr5:49518733-49518989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
650-1403
               

               
Cow position:
               
chr5:34696678-34697440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 14
               

               
Conread position:
               
650-1403
               

               
Cow position:
               
chr5:57482471-57481702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
592
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 14
               

               
Conread position:
               
659-1400
               

               
Cow position:
               
chr5:10918894-10919660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
659-1403
               

               
Cow position:
               
chr5:64781934-64781179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
585
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 5
               

               
Conread position:
               
664-951
               

               
Cow position:
               
chr5:56857108-56856818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 274
               

               
Conread position:
               
664-1052
               

               
Cow position:
               
chr5:10843340-10842949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr5:3964531-3965284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 35
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr5:10776185-10775437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr5:18122389-18121649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr5:31706653-31707384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 34
               

               
Conread position:
               
665-933
               

               
Cow position:
               
chr5:6155141-6154869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
666-854
               

               
Cow position:
               
chr5:32945958-32946147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
667-1403
               

               
Cow position:
               
chr5:73489473-73488722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
579
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 7
               

               
Conread position:
               
668-1359
               

               
Cow position:
               
chr5:7273908-7274621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
668-1403
               

               
Cow position:
               
chr5:3504024-3503284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
670-1399
               

               
Cow position:
               
chr5:2914536-2915279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 191
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr5:46738497-46737739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
583
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 262
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr5:55628074-55628828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
670-1404
               

               
Cow position:
               
chr5:54792547-54791800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
677-1280
               

               
Cow position:
               
chr5:25635929-25636524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
42, 49
               

               
Conread position:
               
677-1385
               

               
Cow position:
               
chr5:59060709-59061432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
679-1399
               

               
Cow position:
               
chr5:32947155-32947892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
469, 0
               

               
Conread position:
               
680-945
               

               
Cow position:
               
chr5:49119188-49118918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 224
               

               
Conread position:
               
680-1403
               

               
Cow position:
               
chr5:37732439-37733180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
682-1252
               

               
Cow position:
               
chr5:415628-415032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 196
               

               
Conread position:
               
682-1403
               

               
Cow position:
               
chr5:4385340-4386079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 189
               

               
Conread position:
               
683-1404
               

               
Cow position:
               
chr5:29867371-29868095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
703-1375
               

               
Cow position:
               
chr5:4019083-4018392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 107
               

               
Conread position:
               
703-1400
               

               
Cow position:
               
chr5:44459598-44460316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
558
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
704-926
               

               
Cow position:
               
chr5:24577031-24577251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
704-1012
               

               
Cow position:
               
chr5:54932102-54931791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1062
               

               
Cow position:
               
chr5:46644801-46645159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 21
               

               
Conread position:
               
704-1070
               

               
Cow position:
               
chr5:10482964-10483337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1093
               

               
Cow position:
               
chr5:32772598-32773002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1150
               

               
Cow position:
               
chr5:46664119-46664560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 196
               

               
Conread position:
               
704-1212
               

               
Cow position:
               
chr5:18666110-18666638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1264
               

               
Cow position:
               
chr5:4089187-4089764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr5:6588904-6588179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
547
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr5:23960199-23959483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr5:27909156-27908437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
549
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr5:46776195-46776903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
711-940
               

               
Cow position:
               
chr5:59482377-59482607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
712-1147
               

               
Cow position:
               
chr5:5667929-5667500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
712-1403
               

               
Cow position:
               
chr5:30579453-30580166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
537
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 38
               

               
Conread position:
               
712-1403
               

               
Cow position:
               
chr5:67594010-67594723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
715-1134
               

               
Cow position:
               
chr5:14345575-14345150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
718-1403
               

               
Cow position:
               
chr5:51770813-51770114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 219
               

               
Conread position:
               
719-1403
               

               
Cow position:
               
chr5:24098805-24099503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 162
               

               
Conread position:
               
720-1403
               

               
Cow position:
               
chr5:59282472-59283153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
518, 595
               

               
Conread position:
               
721-1403
               

               
Cow position:
               
chr5:18401565-18400853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 265
               

               
Conread position:
               
735-1403
               

               
Cow position:
               
chr5:3786079-3786756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 189
               

               
Conread position:
               
736-1354
               

               
Cow position:
               
chr5:12643571-12642938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 366
               

               
Conread position:
               
740-967
               

               
Cow position:
               
chr5:26079068-26078847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
740-970
               

               
Cow position:
               
chr5:68470587-68470361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 131
               

               
Conread position:
               
740-1203
               

               
Cow position:
               
chr5:14380301-14380777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 49
               

               
Conread position:
               
740-1361
               

               
Cow position:
               
chr5:48468127-48467486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 539
               

               
Conread position:
               
740-1400
               

               
Cow position:
               
chr5:35300251-35300931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 540
               

               
Conread position:
               
740-1403
               

               
Cow position:
               
chr5:4069373-4070045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 566
               

               
Conread position:
               
740-1403
               

               
Cow position:
               
chr5:48808576-48807902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 193
               

               
Conread position:
               
740-1403
               

               
Cow position:
               
chr5:53625736-53625086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 84
               

               
Conread position:
               
741-968
               

               
Cow position:
               
chr5:47074464-47074689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
741-1403
               

               
Cow position:
               
chr5:62360589-62361257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
232, 67
               

               
Conread position:
               
741-1404
               

               
Cow position:
               
chr5:43003253-43003918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 65
               

               
Conread position:
               
742-1286
               

               
Cow position:
               
chr5:24588920-24589477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
227, 32
               

               
Conread position:
               
744-1150
               

               
Cow position:
               
chr5:41555451-41555048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 85
               

               
Conread position:
               
754-939
               

               
Cow position:
               
chr5:59144537-59144723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
754-1400
               

               
Cow position:
               
chr5:18663958-18664630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 526
               

               
Conread position:
               
758-1063
               

               
Cow position:
               
chr5:26084403-26084100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 32
               

               
Conread position:
               
770-1400
               

               
Cow position:
               
chr5:241385-242028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 5
               

               
Conread position:
               
775-1258
               

               
Cow position:
               
chr5:2531447-2531946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 204
               

               
Conread position:
               
782-1272
               

               
Cow position:
               
chr5:69621399-69621899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 290
               

               
Conread position:
               
783-1390
               

               
Cow position:
               
chr5:26067696-26067073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 178
               

               
Conread position:
               
787-1400
               

               
Cow position:
               
chr5:46807511-46808145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 494
               

               
Conread position:
               
798-1403
               

               
Cow position:
               
chr5:18115638-18115052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 37
               

               
Conread position:
               
800-1403
               

               
Cow position:
               
chr5:58196245-58196852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 30
               

               
Conread position:
               
801-1373
               

               
Cow position:
               
chr5:75623932-75624495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 35
               

               
Conread position:
               
807-972
               

               
Cow position:
               
chr5:29761779-29761936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
813-1150
               

               
Cow position:
               
chr5:23228921-23229255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
824-1401
               

               
Cow position:
               
chr5:28011891-28012489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 302
               

               
Conread position:
               
824-1404
               

               
Cow position:
               
chr5:45700556-45701150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 140
               

               
Conread position:
               
825-1400
               

               
Cow position:
               
chr5:47830830-47830238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 72
               

               
Conread position:
               
826-1402
               

               
Cow position:
               
chr5:49591853-49591264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 183
               

               
Conread position:
               
827-1150
               

               
Cow position:
               
chr5:41465278-41465599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 129
               

               
Conread position:
               
837-1392
               

               
Cow position:
               
chr5:41961470-41960903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 135
               

               
Conread position:
               
840-972
               

               
Cow position:
               
chr5:32946410-32946542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
851-1384
               

               
Cow position:
               
chr5:4757901-4757346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
862-1353
               

               
Cow position:
               
chr5:51335970-51335475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 35
               

               
Conread position:
               
862-1403
               

               
Cow position:
               
chr5:41929924-41929395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 39
               

               
Conread position:
               
863-1404
               

               
Cow position:
               
chr5:1341756-1341195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 387
               

               
Conread position:
               
870-1400
               

               
Cow position:
               
chr5:45181862-45181311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 411
               

               
Conread position:
               
871-1385
               

               
Cow position:
               
chr5:36715135-36715641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
79, 85
               

               
Conread position:
               
873-1096
               

               
Cow position:
               
chr5:35525041-35525271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 35
               

               
Conread position:
               
877-1132
               

               
Cow position:
               
chr5:24999574-24999317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
103, 136
               

               
Conread position:
               
892-1403
               

               
Cow position:
               
chr5:54824485-54823958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
898-1404
               

               
Cow position:
               
chr5:58152457-58151946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
93, 204
               

               
Conread position:
               
910-1114
               

               
Cow position:
               
chr5:11625044-11624834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 90
               

               
Conread position:
               
910-1400
               

               
Cow position:
               
chr5:42505326-42505838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 370
               

               
Conread position:
               
919-1358
               

               
Cow position:
               
chr5:44784582-44784123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 361
               

               
Conread position:
               
919-1400
               

               
Cow position:
               
chr5:38073363-38073865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 362
               

               
Conread position:
               
920-1403
               

               
Cow position:
               
chr5:18273107-18273575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 51
               

               
Conread position:
               
929-1084
               

               
Cow position:
               
chr5:6154839-6154677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
939-1403
               

               
Cow position:
               
chr5:46629830-46629344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
944-1403
               

               
Cow position:
               
chr5:49518924-49519397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 235
               

               
Conread position:
               
968-1230
               

               
Cow position:
               
chr5:29457118-29457381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
7, 121
               

               
Conread position:
               
969-1385
               

               
Cow position:
               
chr5:29766274-29766702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 390
               

               
Conread position:
               
984-1128
               

               
Cow position:
               
chr5:59482611-59482757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
41, 31
               

               
Conread position:
               
984-1400
               

               
Cow position:
               
chr5:26078796-26078360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 288
               

               
Conread position:
               
985-1403
               

               
Cow position:
               
chr5:53006035-53006465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
989-1403
               

               
Cow position:
               
chr5:47822603-47822177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 111
               

               
Conread position:
               
991-1403
               

               
Cow position:
               
chr5:32363389-32363806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
1004-1403
               

               
Cow position:
               
chr5:28241475-28241889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
1006-1404
               

               
Cow position:
               
chr5:33187195-33187594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
1025-1403
               

               
Cow position:
               
chr5:46005408-46005020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 284
               

               
Conread position:
               
1026-1403
               

               
Cow position:
               
chr5:52613500-52613114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
120, 315
               

               
Conread position:
               
1041-1404
               

               
Cow position:
               
chr5:54861586-54861225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
1042-1400
               

               
Cow position:
               
chr5:10842917-10842544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 231
               

               
Conread position:
               
1051-1403
               

               
Cow position:
               
chr5:46645428-46645795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 216
               

               
Conread position:
               
1058-1292
               

               
Cow position:
               
chr5:59144719-59144967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
91, 213
               

               
Conread position:
               
1058-1393
               

               
Cow position:
               
chr5:49758182-49757841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
1059-1403
               

               
Cow position:
               
chr5:32308913-32308557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 160
               

               
Conread position:
               
1063-1401
               

               
Cow position:
               
chr5:34902676-34903026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 261
               

               
Conread position:
               
1066-1304
               

               
Cow position:
               
chr5:23687556-23687314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 127
               

               
Conread position:
               
1066-1385
               

               
Cow position:
               
chr5:36444198-36443860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
33, 183
               

               
Conread position:
               
1077-1375
               

               
Cow position:
               
chr5:28950369-28950054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
1077-1400
               

               
Cow position:
               
chr5:32773271-32773608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 194
               

               
Conread position:
               
1093-1403
               

               
Cow position:
               
chr5:59639294-59639612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
59, 180
               

               
Conread position:
               
1103-1403
               

               
Cow position:
               
chr5:39246289-39245975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
1104-1402
               

               
Cow position:
               
chr5:20428583-20428897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
1104-1403
               

               
Cow position:
               
chr5:6154376-6154064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 139
               

               
Conread position:
               
1141-1403
               

               
Cow position:
               
chr5:27056112-27055843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1159-1401
               

               
Cow position:
               
chr5:53703571-53703327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
1161-1389
               

               
Cow position:
               
chr5:41554740-41554511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
1163-1399
               

               
Cow position:
               
chr5:1227274-1227505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
1170-1400
               

               
Cow position:
               
chr5:46664617-46664851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1177-1401
               

               
Cow position:
               
chr5:46668568-46668781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
1178-1404
               

               
Cow position:
               
chr5:49130166-49130391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
57, 92
               

               
Conread position:
               
1181-1403
               

               
Cow position:
               
chr5:52434168-52434381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
1187-1331
               

               
Cow position:
               
chr5:35279908-35280053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
1197-1403
               

               
Cow position:
               
chr5:48532659-48532862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
1200-1401
               

               
Cow position:
               
chr5:13046084-13046281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
1200-1402
               

               
Cow position:
               
chr5:40788693-40788901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1210-1398
               

               
Cow position:
               
chr5:307685-307496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1233-1403
               

               
Cow position:
               
chr5:57576968-57577139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
1234-1393
               

               
Cow position:
               
chr5:57671023-57670864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1234-1401
               

               
Cow position:
               
chr5:9419403-9419232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
46, 122
               

               
Conread position:
               
1235-1403
               

               
Cow position:
               
chr5:41465742-41465910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1236-1403
               

               
Cow position:
               
chr5:51313525-51313358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 112
               

               
Conread position:
               
1246-1401
               

               
Cow position:
               
chr5:61277899-61277744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
1251-1367
               

               
Cow position:
               
chr5:5103890-5104006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
1251-1401
               

               
Cow position:
               
chr5:31100739-31100591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
1251-1403
               

               
Cow position:
               
chr5:26346307-26346458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1262-1403
               

               
Cow position:
               
chr5:10856120-10855979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1267-1403
               

               
Cow position:
               
chr5:18885825-18885690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1272-1403
               

               
Cow position:
               
chr5:14344712-14344583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               
Show alignments to all cow chromosomes.