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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8055M19.3
        

               
Conread position:
               
5-548
               

               
Cow position:
               
chr6:6477483-6476950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
31-331
               

               
Cow position:
               
chr6:4905185-4904884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
32-520
               

               
Cow position:
               
chr6:17599316-17598830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
33-520
               

               
Cow position:
               
chr6:68025744-68026232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
38-520
               

               
Cow position:
               
chr6:44028023-44028508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
38-521
               

               
Cow position:
               
chr6:28062327-28062803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 40
               

               
Conread position:
               
38-548
               

               
Cow position:
               
chr6:12093857-12093353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 145
               

               
Conread position:
               
39-520
               

               
Cow position:
               
chr6:21837148-21836661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 29
               

               
Conread position:
               
43-300
               

               
Cow position:
               
chr6:65901039-65900784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
184, 68
               

               
Conread position:
               
47-428
               

               
Cow position:
               
chr6:22852943-22852559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 21
               

               
Conread position:
               
73-520
               

               
Cow position:
               
chr6:332478-332028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
74-520
               

               
Cow position:
               
chr6:13846072-13846519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
69, 41
               

               
Conread position:
               
77-520
               

               
Cow position:
               
chr6:7142455-7142014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
83-502
               

               
Cow position:
               
chr6:66230882-66231283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 32
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr6:2553727-2554162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr6:26671852-26671414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr6:39907170-39907607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
86-520
               

               
Cow position:
               
chr6:57870991-57870553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
88-520
               

               
Cow position:
               
chr6:44151520-44151091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chr6:65823071-65822674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr6:734200-734627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr6:2373739-2374161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr6:8444632-8444206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr6:13942926-13943350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr6:34126367-34126802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
98-520
               

               
Cow position:
               
chr6:58409989-58409562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
107-545
               

               
Cow position:
               
chr6:38231335-38231776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
123-520
               

               
Cow position:
               
chr6:13977593-13977993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
23, 138
               

               
Conread position:
               
123-520
               

               
Cow position:
               
chr6:27168627-27169027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
123-520
               

               
Cow position:
               
chr6:40274307-40274709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
145-520
               

               
Cow position:
               
chr6:43616788-43617166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
98, 114
               

               
Conread position:
               
169-520
               

               
Cow position:
               
chr6:33795225-33794872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 108
               

               
Conread position:
               
173-509
               

               
Cow position:
               
chr6:912778-913104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 23
               

               
Conread position:
               
174-548
               

               
Cow position:
               
chr6:11278545-11278184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
178-485
               

               
Cow position:
               
chr6:52363-52063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
178-497
               

               
Cow position:
               
chr6:8200879-8201193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
178-504
               

               
Cow position:
               
chr6:29310504-29310835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
178-504
               

               
Cow position:
               
chr6:34893864-34893540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr6:701124-701458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr6:5952089-5951762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr6:15142016-15141697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr6:21686044-21686375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr6:24238198-24238524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
125, 31
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr6:36525192-36525518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr6:40555466-40555137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr6:62829756-62829426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
53, 103
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr6:65840733-65841062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
179-509
               

               
Cow position:
               
chr6:3489243-3488919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
189-520
               

               
Cow position:
               
chr6:41757865-41757533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 88
               

               
Conread position:
               
189-520
               

               
Cow position:
               
chr6:45671388-45671720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
54, 89
               

               
Conread position:
               
190-520
               

               
Cow position:
               
chr6:6936006-6935674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 134
               

               
Conread position:
               
205-548
               

               
Cow position:
               
chr6:47958250-47958587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 157
               

               
Conread position:
               
212-462
               

               
Cow position:
               
chr6:52735542-52735797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
215-549
               

               
Cow position:
               
chr6:20561924-20561587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 19
               

               
Conread position:
               
230-505
               

               
Cow position:
               
chr6:65007073-65007337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr6:2401452-2401740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr6:10559413-10559142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr6:13275790-13276061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
233-488
               

               
Cow position:
               
chr6:27530797-27530543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr6:2111748-2111480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr6:3278750-3278477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr6:55545131-55544854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
233-562
               

               
Cow position:
               
chr6:19453143-19453468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 34
               

               
Conread position:
               
269-505
               

               
Cow position:
               
chr6:42926636-42926872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
284-509
               

               
Cow position:
               
chr6:35877477-35877243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 6
               

               
Conread position:
               
322-504
               

               
Cow position:
               
chr6:8762167-8761983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
322-504
               

               
Cow position:
               
chr6:30275888-30275703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
322-509
               

               
Cow position:
               
chr6:17045243-17045435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
324-520
               

               
Cow position:
               
chr6:65926970-65927163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
334-509
               

               
Cow position:
               
chr6:65880155-65880333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr6:66538639-66538822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
343-538
               

               
Cow position:
               
chr6:52803751-52803943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
190, 29
               

               
Conread position:
               
356-504
               

               
Cow position:
               
chr6:10053961-10054108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
139, 18
               

               
Conread position:
               
356-528
               

               
Cow position:
               
chr6:7180339-7180167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
361-548
               

               
Cow position:
               
chr6:30478410-30478599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
362-548
               

               
Cow position:
               
chr6:4904724-4904544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
363-512
               

               
Cow position:
               
chr6:39436965-39437114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-628
               

               
Cow position:
               
chr6:37477572-37477818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
202, 157
               

               
Conread position:
               
401-509
               

               
Cow position:
               
chr6:33388209-33388317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
466-965
               

               
Cow position:
               
chr6:33995296-33994803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 12
               

               
Conread position:
               
549-836
               

               
Cow position:
               
chr6:6476055-6475762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
72, 117
               

               
Conread position:
               
549-1144
               

               
Cow position:
               
chr6:10643655-10644244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 108
               

               
Conread position:
               
549-1403
               

               
Cow position:
               
chr6:1100080-1099182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
907
               

               
Alignm identity:
               
586
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
554-1114
               

               
Cow position:
               
chr6:60169056-60168515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
143, 82
               

               
Conread position:
               
559-1324
               

               
Cow position:
               
chr6:14762736-14761992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
559-1385
               

               
Cow position:
               
chr6:33900102-33899285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
840
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
560-1220
               

               
Cow position:
               
chr6:15477016-15477710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
560-1273
               

               
Cow position:
               
chr6:66541735-66542500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
563-968
               

               
Cow position:
               
chr6:28088706-28088314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
128, 54
               

               
Conread position:
               
566-1403
               

               
Cow position:
               
chr6:8021043-8021858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
867
               

               
Alignm identity:
               
593
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 17
               

               
Conread position:
               
602-1402
               

               
Cow position:
               
chr6:44904629-44905457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
850
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 230
               

               
Conread position:
               
606-1150
               

               
Cow position:
               
chr6:44550924-44550383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 30
               

               
Conread position:
               
606-1401
               

               
Cow position:
               
chr6:7179115-7178319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
815
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
607-1403
               

               
Cow position:
               
chr6:15920033-15920829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
834
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
609-1308
               

               
Cow position:
               
chr6:38900998-38900291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
612-1151
               

               
Cow position:
               
chr6:31566041-31565481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
615-968
               

               
Cow position:
               
chr6:2887336-2887709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
618-1374
               

               
Cow position:
               
chr6:15021386-15022156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
647-1068
               

               
Cow position:
               
chr6:39437761-39438175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 17
               

               
Conread position:
               
648-1066
               

               
Cow position:
               
chr6:40867358-40866933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
650-958
               

               
Cow position:
               
chr6:25214471-25214773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
650-1067
               

               
Cow position:
               
chr6:30274962-30274549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 14
               

               
Conread position:
               
650-1390
               

               
Cow position:
               
chr6:40554370-40553615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
650-1403
               

               
Cow position:
               
chr6:1822423-1821648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
588
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
650-1403
               

               
Cow position:
               
chr6:5949562-5948800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
598
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 14
               

               
Conread position:
               
656-1211
               

               
Cow position:
               
chr6:65841799-65842369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
660-968
               

               
Cow position:
               
chr6:39051007-39050702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
662-1117
               

               
Cow position:
               
chr6:29311712-29312176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
664-1209
               

               
Cow position:
               
chr6:39908748-39909307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
664-1385
               

               
Cow position:
               
chr6:13104279-13105017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr6:331248-330489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
664-1400
               

               
Cow position:
               
chr6:16052101-16052855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
665-1055
               

               
Cow position:
               
chr6:3277728-3277340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
665-1133
               

               
Cow position:
               
chr6:34892784-34892306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 333
               

               
Conread position:
               
665-1403
               

               
Cow position:
               
chr6:27529785-27529024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
666-1403
               

               
Cow position:
               
chr6:47042973-47042224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
668-1399
               

               
Cow position:
               
chr6:3889256-3888531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
670-972
               

               
Cow position:
               
chr6:8201967-8202269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
670-972
               

               
Cow position:
               
chr6:55544097-55543793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
670-1083
               

               
Cow position:
               
chr6:36526276-36526696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 337
               

               
Conread position:
               
670-1403
               

               
Cow position:
               
chr6:6566835-6567567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
563
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 180
               

               
Conread position:
               
671-874
               

               
Cow position:
               
chr6:43607472-43607269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
151, 40
               

               
Conread position:
               
677-1400
               

               
Cow position:
               
chr6:40275321-40276061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
678-1053
               

               
Cow position:
               
chr6:15280320-15279942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
678-1403
               

               
Cow position:
               
chr6:15140948-15140200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
573
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
678-1403
               

               
Cow position:
               
chr6:17046286-17047029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 433
               

               
Conread position:
               
678-1403
               

               
Cow position:
               
chr6:30479331-30480077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
679-833
               

               
Cow position:
               
chr6:702187-702342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 145
               

               
Conread position:
               
682-881
               

               
Cow position:
               
chr6:4508189-4507984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
682-941
               

               
Cow position:
               
chr6:3544725-3544986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 204
               

               
Conread position:
               
682-1030
               

               
Cow position:
               
chr6:58026989-58027342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
682-1057
               

               
Cow position:
               
chr6:64715465-64715848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 305
               

               
Conread position:
               
682-1398
               

               
Cow position:
               
chr6:52693259-52693988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 222
               

               
Conread position:
               
682-1403
               

               
Cow position:
               
chr6:20560876-20560125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
687-1401
               

               
Cow position:
               
chr6:66232054-66232791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 188
               

               
Conread position:
               
703-846
               

               
Cow position:
               
chr6:58408655-58408512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
703-1304
               

               
Cow position:
               
chr6:28275240-28275857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 252
               

               
Conread position:
               
703-1385
               

               
Cow position:
               
chr6:13847282-13847986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
703-1400
               

               
Cow position:
               
chr6:17598022-17597336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
704-846
               

               
Cow position:
               
chr6:28491256-28491114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
704-1056
               

               
Cow position:
               
chr6:68027050-68027407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1064
               

               
Cow position:
               
chr6:65821868-65821500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 316
               

               
Conread position:
               
704-1150
               

               
Cow position:
               
chr6:69221952-69221499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1231
               

               
Cow position:
               
chr6:65914460-65914997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 47
               

               
Conread position:
               
704-1385
               

               
Cow position:
               
chr6:13944165-13944866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 576
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr6:43617973-43618690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1400
               

               
Cow position:
               
chr6:44150298-44149582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
704-1403
               

               
Cow position:
               
chr6:40251921-40252636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
704-1404
               

               
Cow position:
               
chr6:65928228-65928939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 424
               

               
Conread position:
               
711-1400
               

               
Cow position:
               
chr6:2374966-2375672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
712-818
               

               
Cow position:
               
chr6:913926-914032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
712-942
               

               
Cow position:
               
chr6:19337313-19337088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
712-1084
               

               
Cow position:
               
chr6:13317232-13316859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 50
               

               
Conread position:
               
712-1400
               

               
Cow position:
               
chr6:8761032-8760316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 165
               

               
Conread position:
               
712-1403
               

               
Cow position:
               
chr6:538257-538961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 228
               

               
Conread position:
               
712-1403
               

               
Cow position:
               
chr6:28105581-28104885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 52
               

               
Conread position:
               
714-1326
               

               
Cow position:
               
chr6:10631326-10631944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 76
               

               
Conread position:
               
715-1028
               

               
Cow position:
               
chr6:14852308-14851991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 0
               

               
Conread position:
               
715-1397
               

               
Cow position:
               
chr6:34005098-34004432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
715-1399
               

               
Cow position:
               
chr6:35876440-35875743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 411
               

               
Conread position:
               
715-1403
               

               
Cow position:
               
chr6:51086215-51086920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 176
               

               
Conread position:
               
725-957
               

               
Cow position:
               
chr6:65881191-65881423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
725-1403
               

               
Cow position:
               
chr6:11724825-11724142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 75
               

               
Conread position:
               
735-972
               

               
Cow position:
               
chr6:25794064-25794299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
735-1366
               

               
Cow position:
               
chr6:27470893-27471539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 479
               

               
Conread position:
               
739-1403
               

               
Cow position:
               
chr6:40315683-40316366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 76
               

               
Conread position:
               
740-956
               

               
Cow position:
               
chr6:41656985-41656773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
740-967
               

               
Cow position:
               
chr6:48707842-48707611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 14
               

               
Conread position:
               
740-1050
               

               
Cow position:
               
chr6:28063630-28063946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 185
               

               
Conread position:
               
740-1366
               

               
Cow position:
               
chr6:12529785-12530426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 247
               

               
Conread position:
               
740-1400
               

               
Cow position:
               
chr6:7141176-7140489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 517
               

               
Conread position:
               
740-1400
               

               
Cow position:
               
chr6:12666019-12665345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 66
               

               
Conread position:
               
740-1400
               

               
Cow position:
               
chr6:27169875-27170550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 162
               

               
Conread position:
               
740-1400
               

               
Cow position:
               
chr6:44032086-44032766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 474
               

               
Conread position:
               
740-1401
               

               
Cow position:
               
chr6:27332080-27332724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
740-1403
               

               
Cow position:
               
chr6:26670573-26669885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 210
               

               
Conread position:
               
741-1067
               

               
Cow position:
               
chr6:1411648-1411315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 0
               

               
Conread position:
               
742-1113
               

               
Cow position:
               
chr6:38233136-38233507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 64
               

               
Conread position:
               
743-1150
               

               
Cow position:
               
chr6:10499427-10499013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 0
               

               
Conread position:
               
743-1150
               

               
Cow position:
               
chr6:24323084-24322670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 0
               

               
Conread position:
               
744-1403
               

               
Cow position:
               
chr6:21972956-21973631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 51
               

               
Conread position:
               
745-1403
               

               
Cow position:
               
chr6:24239360-24240030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 162
               

               
Conread position:
               
745-1403
               

               
Cow position:
               
chr6:43793411-43792740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 100
               

               
Conread position:
               
747-1396
               

               
Cow position:
               
chr6:185481-184814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
754-1048
               

               
Cow position:
               
chr6:40813357-40813057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 61
               

               
Conread position:
               
758-1403
               

               
Cow position:
               
chr6:65941515-65940845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 118
               

               
Conread position:
               
786-1404
               

               
Cow position:
               
chr6:59918729-59918097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 60
               

               
Conread position:
               
791-1403
               

               
Cow position:
               
chr6:58600832-58601457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 76
               

               
Conread position:
               
798-1034
               

               
Cow position:
               
chr6:11274561-11274332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
800-1402
               

               
Cow position:
               
chr6:3488063-3487447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 23
               

               
Conread position:
               
809-1067
               

               
Cow position:
               
chr6:6544580-6544840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
11, 18
               

               
Conread position:
               
810-1035
               

               
Cow position:
               
chr6:10500664-10500892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
163, 106
               

               
Conread position:
               
810-1385
               

               
Cow position:
               
chr6:1382922-1382354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 59
               

               
Conread position:
               
811-1400
               

               
Cow position:
               
chr6:186104-185494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 469
               

               
Conread position:
               
819-1250
               

               
Cow position:
               
chr6:40326307-40325858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 30
               

               
Conread position:
               
824-970
               

               
Cow position:
               
chr6:26044928-26045075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
826-1399
               

               
Cow position:
               
chr6:69143033-69143597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
826-1403
               

               
Cow position:
               
chr6:6475486-6474890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 31
               

               
Conread position:
               
833-1147
               

               
Cow position:
               
chr6:51714091-51714408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
837-1190
               

               
Cow position:
               
chr6:40973674-40974029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 138
               

               
Conread position:
               
837-1403
               

               
Cow position:
               
chr6:914027-914606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 231
               

               
Conread position:
               
862-1084
               

               
Cow position:
               
chr6:702328-702558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
862-1404
               

               
Cow position:
               
chr6:28133354-28133908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 265
               

               
Conread position:
               
869-1304
               

               
Cow position:
               
chr6:10333717-10333279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
172, 28
               

               
Conread position:
               
872-1130
               

               
Cow position:
               
chr6:32330095-32329834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
105, 33
               

               
Conread position:
               
873-1150
               

               
Cow position:
               
chr6:48369250-48369518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
264, 26
               

               
Conread position:
               
880-1150
               

               
Cow position:
               
chr6:41804292-41804579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
887-1403
               

               
Cow position:
               
chr6:19491759-19492277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 50
               

               
Conread position:
               
910-1369
               

               
Cow position:
               
chr6:13871662-13872143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
910-1400
               

               
Cow position:
               
chr6:28491101-28490590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 207
               

               
Conread position:
               
911-1225
               

               
Cow position:
               
chr6:17245108-17244781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 182
               

               
Conread position:
               
912-1400
               

               
Cow position:
               
chr6:43999527-44000035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 423
               

               
Conread position:
               
920-1150
               

               
Cow position:
               
chr6:3048792-3048555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
924-1150
               

               
Cow position:
               
chr6:28703841-28703614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 114
               

               
Conread position:
               
950-1393
               

               
Cow position:
               
chr6:16634749-16635219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
24, 118
               

               
Conread position:
               
979-1403
               

               
Cow position:
               
chr6:65881749-65882188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 236
               

               
Conread position:
               
982-1382
               

               
Cow position:
               
chr6:10059403-10059811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
39, 96
               

               
Conread position:
               
984-1150
               

               
Cow position:
               
chr6:33274-33443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
984-1403
               

               
Cow position:
               
chr6:25214767-25215196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
989-1403
               

               
Cow position:
               
chr6:8202729-8203160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
989-1403
               

               
Cow position:
               
chr6:63765509-63765093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
990-1259
               

               
Cow position:
               
chr6:26045386-26045673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
45, 223
               

               
Conread position:
               
992-1403
               

               
Cow position:
               
chr6:32449344-32448930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
995-1403
               

               
Cow position:
               
chr6:55542700-55542288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 255
               

               
Conread position:
               
997-1403
               

               
Cow position:
               
chr6:50634526-50634915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
1025-1403
               

               
Cow position:
               
chr6:16621013-16621406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
1029-1150
               

               
Cow position:
               
chr6:69233122-69233001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1038-1404
               

               
Cow position:
               
chr6:11274297-11273935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
1039-1401
               

               
Cow position:
               
chr6:38271501-38271864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 110
               

               
Conread position:
               
1042-1400
               

               
Cow position:
               
chr6:68027524-68027901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 231
               

               
Conread position:
               
1051-1400
               

               
Cow position:
               
chr6:65821362-65820999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 223
               

               
Conread position:
               
1051-1403
               

               
Cow position:
               
chr6:3276763-3276397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 192
               

               
Conread position:
               
1051-1403
               

               
Cow position:
               
chr6:15279195-15278834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1051-1403
               

               
Cow position:
               
chr6:39438378-39438742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 56
               

               
Conread position:
               
1052-1288
               

               
Cow position:
               
chr6:59477813-59477565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
97, 191
               

               
Conread position:
               
1052-1390
               

               
Cow position:
               
chr6:56043106-56042754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
1052-1403
               

               
Cow position:
               
chr6:40866705-40866347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 191
               

               
Conread position:
               
1055-1400
               

               
Cow position:
               
chr6:1411042-1410678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 217
               

               
Conread position:
               
1055-1400
               

               
Cow position:
               
chr6:51730713-51731071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 221
               

               
Conread position:
               
1058-1403
               

               
Cow position:
               
chr6:30274273-30273919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 214
               

               
Conread position:
               
1077-1403
               

               
Cow position:
               
chr6:28169541-28169881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1080-1403
               

               
Cow position:
               
chr6:13316831-13316496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1090-1332
               

               
Cow position:
               
chr6:10609556-10609813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 153
               

               
Conread position:
               
1092-1285
               

               
Cow position:
               
chr6:36526914-36527124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
61, 207
               

               
Conread position:
               
1092-1403
               

               
Cow position:
               
chr6:702854-703193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 293
               

               
Conread position:
               
1093-1403
               

               
Cow position:
               
chr6:11404188-11404505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
1100-1403
               

               
Cow position:
               
chr6:19337077-19336765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
1100-1403
               

               
Cow position:
               
chr6:58027333-58027650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
1102-1400
               

               
Cow position:
               
chr6:39334207-39333895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1104-1314
               

               
Cow position:
               
chr6:14389242-14389466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
45, 170
               

               
Conread position:
               
1110-1403
               

               
Cow position:
               
chr6:13310682-13310383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 156
               

               
Conread position:
               
1123-1296
               

               
Cow position:
               
chr6:29312209-29312396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1125-1403
               

               
Cow position:
               
chr6:34891439-34891147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1154-1400
               

               
Cow position:
               
chr6:3149987-3150237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
1155-1403
               

               
Cow position:
               
chr6:41190046-41190296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
1155-1403
               

               
Cow position:
               
chr6:58065458-58065717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
1159-1398
               

               
Cow position:
               
chr6:7834255-7834487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 104
               

               
Conread position:
               
1161-1385
               

               
Cow position:
               
chr6:64716718-64716945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1161-1403
               

               
Cow position:
               
chr6:10644476-10644717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
1161-1403
               

               
Cow position:
               
chr6:16665691-16665928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
1161-1403
               

               
Cow position:
               
chr6:51715270-51715514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 104
               

               
Conread position:
               
1162-1400
               

               
Cow position:
               
chr6:1404861-1404612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
23, 103
               

               
Conread position:
               
1163-1403
               

               
Cow position:
               
chr6:4259013-4258771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
25, 107
               

               
Conread position:
               
1169-1401
               

               
Cow position:
               
chr6:6157297-6157516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1169-1403
               

               
Cow position:
               
chr6:34443656-34443892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
1171-1385
               

               
Cow position:
               
chr6:39910079-39910293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
1178-1400
               

               
Cow position:
               
chr6:46573856-46573633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 83
               

               
Conread position:
               
1178-1403
               

               
Cow position:
               
chr6:31565403-31565181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
1178-1403
               

               
Cow position:
               
chr6:65842376-65842599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 206
               

               
Conread position:
               
1181-1403
               

               
Cow position:
               
chr6:54179761-54179984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
1191-1400
               

               
Cow position:
               
chr6:25794049-25793839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1210-1400
               

               
Cow position:
               
chr6:50646401-50646210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
1218-1403
               

               
Cow position:
               
chr6:15926795-15926607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1222-1403
               

               
Cow position:
               
chr6:18973613-18973429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1230-1402
               

               
Cow position:
               
chr6:66193716-66193544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1234-1403
               

               
Cow position:
               
chr6:33991590-33991423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1234-1403
               

               
Cow position:
               
chr6:44550347-44550185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1234-1404
               

               
Cow position:
               
chr6:15477971-15478135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
121, 5
               

               
Conread position:
               
1237-1393
               

               
Cow position:
               
chr6:28114060-28113905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1239-1385
               

               
Cow position:
               
chr6:11871832-11871687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
1241-1403
               

               
Cow position:
               
chr6:60931506-60931662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1247-1403
               

               
Cow position:
               
chr6:17244579-17244423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1255-1400
               

               
Cow position:
               
chr6:36527130-36527274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1261-1398
               

               
Cow position:
               
chr6:21836358-21836221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1261-1403
               

               
Cow position:
               
chr6:16598672-16598815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 67
               

               
Conread position:
               
1262-1403
               

               
Cow position:
               
chr6:27938717-27938859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
1291-1403
               

               
Cow position:
               
chr6:1535712-1535600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1295-1400
               

               
Cow position:
               
chr6:40326284-40326389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.