Cow genome map

Conread name: Ss1.1-Pig4-TMW8056B14.3

Conread position: 278-396
Cow position: chr12:32656051-32655933 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 91
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 278-397
Cow position: chr12:42605680-42605799 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 278-411
Cow position: chr12:1775418-1775551 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 127

Conread position: 278-411
Cow position: chr12:12929387-12929519 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 127, 0

Conread position: 278-411
Cow position: chr12:33926023-33926155 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 278-411
Cow position: chr12:38892858-38892726 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 127, 0

Conread position: 289-397
Cow position: chr12:3717785-3717893 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 289-397
Cow position: chr12:18585161-18585053 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-397
Cow position: chr12:36212742-36212634 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-409
Cow position: chr12:28764545-28764665 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 291-411
Cow position: chr12:19872767-19872648 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 395-722
Cow position: chr12:20881640-20881973 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 210
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 153, 37

Conread position: 395-731
Cow position: chr12:35633983-35633656 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 43, 0

Conread position: 396-532
Cow position: chr12:21943279-21943414 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 127, 0

Conread position: 396-544
Cow position: chr12:11581537-11581683 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 142, 0

Conread position: 396-603
Cow position: chr12:21897359-21897563 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 24, 0

Conread position: 396-606
Cow position: chr12:39038930-39038723 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 93, 0

Conread position: 396-626
Cow position: chr12:23140639-23140406 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 74, 144

Conread position: 396-629
Cow position: chr12:32677459-32677233 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 72, 0

Conread position: 396-637
Cow position: chr12:43913374-43913613 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 396-686
Cow position: chr12:24994427-24994139 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-719
Cow position: chr12:15950271-15949951 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 396-724
Cow position: chr12:20996551-20996239 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 396-725
Cow position: chr12:48222893-48223224 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 222
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 134, 36

Conread position: 396-729
Cow position: chr12:21429544-21429875 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr12:1776427-1776085 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 32

Conread position: 396-731
Cow position: chr12:1888023-1887700 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr12:3362471-3362801 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 396-731
Cow position: chr12:3971003-3970687 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 20, 0

Conread position: 396-731
Cow position: chr12:21210200-21210533 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 146

Conread position: 396-731
Cow position: chr12:21253050-21252717 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 396-731
Cow position: chr12:21482638-21482955 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 396-731
Cow position: chr12:22519444-22519112 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr12:22568219-22567889 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr12:25098939-25098610 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 396-731
Cow position: chr12:27854429-27854096 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 396-731
Cow position: chr12:29445269-29445592 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 24, 0

Conread position: 396-731
Cow position: chr12:30677173-30677508 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 38, 60

Conread position: 396-731
Cow position: chr12:32655086-32655418 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 396-731
Cow position: chr12:34174878-34175212 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 144

Conread position: 396-731
Cow position: chr12:35346066-35346390 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 396-731
Cow position: chr12:42606715-42606382 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr12:48471351-48471029 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-732
Cow position: chr12:21092191-21091862 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 397-708
Cow position: chr12:33042897-33043197 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 147

Conread position: 397-727
Cow position: chr12:24433548-24433222 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 0

Conread position: 397-728
Cow position: chr12:8138619-8138296 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 39, 21

Conread position: 398-719
Cow position: chr12:22204174-22203855 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 398-721
Cow position: chr12:42857996-42857676 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-722
Cow position: chr12:8554385-8554700 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 212
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 98

Conread position: 398-725
Cow position: chr12:3209507-3209830 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 140

Conread position: 398-725
Cow position: chr12:14660812-14660490 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 398-727
Cow position: chr12:9401148-9400825 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 209
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 66

Conread position: 398-730
Cow position: chr12:756722-757040 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 398-730
Cow position: chr12:19870426-19870748 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 117

Conread position: 398-730
Cow position: chr12:25261977-25261652 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 398-731
Cow position: chr12:11099764-11100105 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 151

Conread position: 398-731
Cow position: chr12:20461692-20461364 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr12:27931371-27931041 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 151

Conread position: 398-731
Cow position: chr12:28005416-28005739 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 398-731
Cow position: chr12:30685277-30685600 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 398-731
Cow position: chr12:37560551-37560872 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 125

Conread position: 399-727
Cow position: chr12:486358-486687 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 214
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 72, 52

Conread position: 402-719
Cow position: chr12:12294103-12294407 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 218
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 152, 65

Conread position: 402-731
Cow position: chr12:17967355-17967671 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 128

Conread position: 405-723
Cow position: chr12:466733-466404 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 224
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 96, 102

Conread position: 405-728
Cow position: chr12:8891411-8891094 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 209
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 410-648
Cow position: chr12:4633934-4633698 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 134, 53

Conread position: 410-727
Cow position: chr12:23161360-23161048 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 10

Conread position: 410-731
Cow position: chr12:6405089-6404770 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 411-731
Cow position: chr12:8676539-8676221 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 413-731
Cow position: chr12:21428040-21427724 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 415-691
Cow position: chr12:21310684-21310413 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 192, 120

Conread position: 415-731
Cow position: chr12:1404050-1404379 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 135, 245

Conread position: 420-731
Cow position: chr12:33120969-33121285 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 12

Conread position: 436-723
Cow position: chr12:21224876-21224596 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 15

Conread position: 448-724
Cow position: chr12:19222566-19222831 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 453-731
Cow position: chr12:20844470-20844745 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 454-725
Cow position: chr12:5145255-5145515 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 85, 0

Conread position: 468-731
Cow position: chr12:25267804-25267543 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 476-731
Cow position: chr12:34996582-34996831 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 0

Conread position: 489-708
Cow position: chr12:18465513-18465716 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 492-671
Cow position: chr12:3505703-3505879 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 510-731
Cow position: chr12:24976849-24976621 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 145, 123

Conread position: 512-727
Cow position: chr12:23101411-23101202 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 11

Conread position: 523-728
Cow position: chr12:21199897-21200102 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 196, 26

Conread position: 542-728
Cow position: chr12:21943831-21944015 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 163, 0

Conread position: 548-723
Cow position: chr12:17980523-17980686 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 586-723
Cow position: chr12:23258015-23257883 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 625-731
Cow position: chr12:2283453-2283559 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 630-731
Cow position: chr12:23139406-23139306 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Show alignments to all cow chromosomes.