Cow genome map

Conread name: Ss1.1-Pig4-TMW8056B14.3

Conread position: 278-397
Cow position: chr19:20610936-20610817 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 278-409
Cow position: chr19:12775727-12775596 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 278-411
Cow position: chr19:7344637-7344505 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 127, 0

Conread position: 278-411
Cow position: chr19:15445261-15445393 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 127, 0

Conread position: 278-411
Cow position: chr19:22511172-22511304 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 126, 0

Conread position: 278-411
Cow position: chr19:43147278-43147146 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 127, 0

Conread position: 288-397
Cow position: chr19:7490692-7490583 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 288-415
Cow position: chr19:336301-336425 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 289-397
Cow position: chr19:33876008-33875900 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-409
Cow position: chr19:21338250-21338370 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-721
Cow position: chr19:44032096-44032422 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 264, 5

Conread position: 386-725
Cow position: chr19:33639713-33640049 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 31

Conread position: 391-643
Cow position: chr19:11900341-11900607 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 152, 20

Conread position: 391-694
Cow position: chr19:19523117-19522814 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 43, 135

Conread position: 395-731
Cow position: chr19:5730474-5730807 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 149

Conread position: 396-527
Cow position: chr19:39931-40060 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 396-599
Cow position: chr19:33596134-33595932 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 114, 0

Conread position: 396-649
Cow position: chr19:35107160-35106911 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 122, 0

Conread position: 396-717
Cow position: chr19:1660297-1660626 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 151, 261

Conread position: 396-719
Cow position: chr19:16318995-16318673 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 143

Conread position: 396-719
Cow position: chr19:39666914-39666596 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 214

Conread position: 396-721
Cow position: chr19:23400607-23400295 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 104, 0

Conread position: 396-722
Cow position: chr19:30559821-30560143 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 396-723
Cow position: chr19:166494-166173 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 105

Conread position: 396-727
Cow position: chr19:30453720-30453394 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 9

Conread position: 396-728
Cow position: chr19:5678164-5677842 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 34

Conread position: 396-728
Cow position: chr19:48860129-48859796 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 222

Conread position: 396-731
Cow position: chr19:265288-265614 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 396-731
Cow position: chr19:774238-774571 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 0

Conread position: 396-731
Cow position: chr19:1587603-1587270 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 29

Conread position: 396-731
Cow position: chr19:2272482-2272153 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 396-731
Cow position: chr19:7343701-7344034 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr19:9706540-9706211 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 117, 48

Conread position: 396-731
Cow position: chr19:20106360-20106693 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr19:28595170-28595505 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 154

Conread position: 396-731
Cow position: chr19:32181424-32181070 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 245
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 85, 24

Conread position: 396-731
Cow position: chr19:33875045-33875378 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 396-731
Cow position: chr19:40471067-40470735 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 155

Conread position: 397-650
Cow position: chr19:161508-161262 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 397-731
Cow position: chr19:27036010-27035688 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 226
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 142, 0

Conread position: 397-731
Cow position: chr19:28367573-28367907 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 236
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 145, 113

Conread position: 397-731
Cow position: chr19:40886106-40885776 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 398-588
Cow position: chr19:437803-437614 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 143, 0

Conread position: 398-716
Cow position: chr19:12774740-12775056 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-721
Cow position: chr19:206144-206466 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 246

Conread position: 398-721
Cow position: chr19:28580039-28579709 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 151

Conread position: 398-723
Cow position: chr19:31273024-31272699 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 213
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 154, 58

Conread position: 398-723
Cow position: chr19:35383978-35383653 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 222
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 57

Conread position: 398-725
Cow position: chr19:40850830-40850507 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 68

Conread position: 398-731
Cow position: chr19:892000-891672 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 398-731
Cow position: chr19:1583888-1584221 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 398-731
Cow position: chr19:4387237-4387566 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr19:5899873-5899543 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 398-731
Cow position: chr19:33943203-33943534 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr19:39183909-39183577 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 0

Conread position: 399-603
Cow position: chr19:14159526-14159322 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 142, 97

Conread position: 399-627
Cow position: chr19:42582822-42582595 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 123, 57

Conread position: 399-663
Cow position: chr19:52843181-52843443 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 175
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 401-719
Cow position: chr19:28405080-28404776 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 55

Conread position: 401-725
Cow position: chr19:376087-375762 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 248

Conread position: 402-731
Cow position: chr19:547949-547615 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 252

Conread position: 403-731
Cow position: chr19:52150041-52149715 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 404-719
Cow position: chr19:3175026-3175319 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 162, 78

Conread position: 404-723
Cow position: chr19:29141716-29142031 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 77, 63

Conread position: 404-731
Cow position: chr19:39392151-39392476 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 0

Conread position: 410-725
Cow position: chr19:173907-174220 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 410-731
Cow position: chr19:2586856-2587187 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 92, 34

Conread position: 410-731
Cow position: chr19:43146307-43146624 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 414-731
Cow position: chr19:3139622-3139930 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 135

Conread position: 416-728
Cow position: chr19:1489420-1489108 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 10, 111

Conread position: 425-731
Cow position: chr19:32204916-32205223 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 124, 36

Conread position: 426-588
Cow position: chr19:256951-257110 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 81, 0

Conread position: 443-730
Cow position: chr19:32468584-32468869 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 454-723
Cow position: chr19:45598562-45598310 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 456-719
Cow position: chr19:33904761-33905016 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 96, 0

Conread position: 464-651
Cow position: chr19:29085488-29085672 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 129
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 479-730
Cow position: chr19:39689480-39689730 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 73

Conread position: 485-725
Cow position: chr19:39921779-39921537 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 161
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 185, 54

Conread position: 493-731
Cow position: chr19:39097142-39097378 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 106

Conread position: 507-715
Cow position: chr19:6712979-6712767 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 50, 42

Conread position: 511-730
Cow position: chr19:337314-337097 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 512-731
Cow position: chr19:40101-40315 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 518-731
Cow position: chr19:30756999-30757202 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 7, 0

Conread position: 521-702
Cow position: chr19:19178272-19178090 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 29

Conread position: 523-702
Cow position: chr19:18360492-18360316 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 529-731
Cow position: chr19:5027279-5027080 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 543-715
Cow position: chr19:26415953-26415784 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 543-723
Cow position: chr19:24063677-24063858 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 105

Conread position: 549-731
Cow position: chr19:21339061-21338880 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 150
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 0

Conread position: 563-731
Cow position: chr19:15446064-15445897 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 90, 0

Conread position: 582-731
Cow position: chr19:22511956-22511808 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 126
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 71, 0

Conread position: 582-731
Cow position: chr19:36417839-36417987 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 592-723
Cow position: chr19:134919-134789 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 592-731
Cow position: chr19:257140-257276 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 601-725
Cow position: chr19:437505-437382 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.