Cow genome map

Conread name: Ss1.1-Pig4-TMW8056B14.3

Conread position: 273-411
Cow position: chr23:8705368-8705231 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 0

Conread position: 273-411
Cow position: chr23:28221211-28221073 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 133

Conread position: 277-392
Cow position: chr23:2411137-2411252 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 277-402
Cow position: chr23:10556584-10556710 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 278-411
Cow position: chr23:4080640-4080508 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 278-411
Cow position: chr23:19316983-19316851 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 278-411
Cow position: chr23:21773414-21773546 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 127, 0

Conread position: 278-411
Cow position: chr23:36097318-36097186 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 289-397
Cow position: chr23:528563-528455 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 289-397
Cow position: chr23:609219-609111 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 289-397
Cow position: chr23:4516027-4515920 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 289-397
Cow position: chr23:14960463-14960571 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-397
Cow position: chr23:32008987-32008879 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-403
Cow position: chr23:11781281-11781167 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-403
Cow position: chr23:19441379-19441493 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 289-411
Cow position: chr23:7313605-7313726 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 289-411
Cow position: chr23:22989388-22989509 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 291-412
Cow position: chr23:1339288-1339408 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 103
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 113, 0

Conread position: 384-603
Cow position: chr23:11931685-11931898 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 385-731
Cow position: chr23:7044677-7044346 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 234
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 120, 5

Conread position: 392-695
Cow position: chr23:14556337-14556639 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 191
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 157, 0

Conread position: 394-719
Cow position: chr23:26158911-26158593 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 236
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 156, 48

Conread position: 394-731
Cow position: chr23:617944-617614 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 219
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 73

Conread position: 395-641
Cow position: chr23:12547716-12547960 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 105, 149

Conread position: 395-731
Cow position: chr23:5873041-5872707 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 396-509
Cow position: chr23:38692023-38692136 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 396-545
Cow position: chr23:4514015-4514164 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 105, 111

Conread position: 396-546
Cow position: chr23:8287472-8287620 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 142, 0

Conread position: 396-553
Cow position: chr23:22168172-22168328 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 107, 115

Conread position: 396-556
Cow position: chr23:25677768-25677615 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 5, 61

Conread position: 396-659
Cow position: chr23:23172308-23172569 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-687
Cow position: chr23:26838350-26838648 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 203
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 147, 97

Conread position: 396-718
Cow position: chr23:1400673-1400357 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 396-719
Cow position: chr23:29450797-29450478 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 24

Conread position: 396-719
Cow position: chr23:32883813-32883497 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 159, 115

Conread position: 396-725
Cow position: chr23:1012287-1011963 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 396-726
Cow position: chr23:11714334-11714006 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr23:608247-608577 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 396-731
Cow position: chr23:1022428-1022095 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 64

Conread position: 396-731
Cow position: chr23:3707935-3708267 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr23:4435184-4435518 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 186

Conread position: 396-731
Cow position: chr23:14972424-14972092 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 154

Conread position: 396-731
Cow position: chr23:15876037-15875704 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 8

Conread position: 396-731
Cow position: chr23:17878229-17877885 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 239
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 106, 120

Conread position: 396-731
Cow position: chr23:22369568-22369246 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 20, 120

Conread position: 396-731
Cow position: chr23:28218957-28219299 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 259

Conread position: 396-731
Cow position: chr23:32351230-32350897 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr23:35274178-35274507 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 23

Conread position: 396-731
Cow position: chr23:41141695-41141362 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 154

Conread position: 397-723
Cow position: chr23:29478745-29479064 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 102

Conread position: 397-730
Cow position: chr23:23283058-23283395 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 255

Conread position: 398-719
Cow position: chr23:20154693-20154375 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-719
Cow position: chr23:36029846-36029529 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 109

Conread position: 398-723
Cow position: chr23:1957704-1958017 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 398-725
Cow position: chr23:4890220-4890541 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 398-725
Cow position: chr23:15218354-15218029 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-730
Cow position: chr23:22145772-22145442 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr23:964961-964637 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 141

Conread position: 398-731
Cow position: chr23:2025546-2025216 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 398-731
Cow position: chr23:2759432-2759763 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr23:2793737-2793406 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 53

Conread position: 398-731
Cow position: chr23:3879552-3879221 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr23:4639058-4638733 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 398-731
Cow position: chr23:7314444-7314775 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 398-731
Cow position: chr23:11780313-11780653 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 143

Conread position: 398-731
Cow position: chr23:14961418-14961087 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 112

Conread position: 398-731
Cow position: chr23:15527111-15527445 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 251

Conread position: 398-731
Cow position: chr23:19491085-19491415 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr23:28304449-28304780 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr23:31164337-31164666 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 400-725
Cow position: chr23:11074942-11074628 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 143, 210

Conread position: 401-731
Cow position: chr23:16055310-16055638 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 133

Conread position: 404-725
Cow position: chr23:4818562-4818879 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 404-725
Cow position: chr23:21821779-21821469 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 119

Conread position: 404-731
Cow position: chr23:2439750-2439422 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 136

Conread position: 404-731
Cow position: chr23:15178603-15178928 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 0

Conread position: 404-731
Cow position: chr23:31648492-31648171 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 0

Conread position: 410-731
Cow position: chr23:13512632-13512938 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 121, 15

Conread position: 413-731
Cow position: chr23:16497696-16497389 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 414-717
Cow position: chr23:22942422-22942133 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 24, 0

Conread position: 420-725
Cow position: chr23:30563963-30564263 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 208
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 276, 22

Conread position: 426-731
Cow position: chr23:15041011-15040706 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 120, 163

Conread position: 434-731
Cow position: chr23:2577197-2577488 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 134

Conread position: 448-731
Cow position: chr23:2342699-2342959 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 465-731
Cow position: chr23:38579278-38579536 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 477-731
Cow position: chr23:1340189-1339937 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 485-719
Cow position: chr23:6220903-6221140 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 493-717
Cow position: chr23:15660145-15659928 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 21, 0

Conread position: 512-728
Cow position: chr23:7356883-7357099 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 18, 9

Conread position: 532-722
Cow position: chr23:11977858-11978047 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 115, 18

Conread position: 542-708
Cow position: chr23:4514644-4514809 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 19, 44

Conread position: 543-719
Cow position: chr23:25677278-25677107 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 104, 0

Conread position: 552-731
Cow position: chr23:22168355-22168533 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 147
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 6, 16

Conread position: 554-708
Cow position: chr23:29693420-29693258 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 69

Conread position: 554-724
Cow position: chr23:7373805-7373974 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 118
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 557-731
Cow position: chr23:10874911-10874737 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 143
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 153, 90

Conread position: 602-731
Cow position: chr23:3417946-3418074 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 611-719
Cow position: chr23:17844629-17844735 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 619-731
Cow position: chr23:942715-942827 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 28

Conread position: 620-731
Cow position: chr23:29443334-29443224 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 627-731
Cow position: chr23:37200758-37200655 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 0

Show alignments to all cow chromosomes.