Cow genome map

Conread name: Ss1.1-Pig4-TMW8056B14.3

Conread position: 273-411
Cow position: chr25:29359321-29359184 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 0

Conread position: 273-411
Cow position: chr25:29803487-29803624 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 132, 0

Conread position: 278-397
Cow position: chr25:34674201-34674082 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 278-411
Cow position: chr25:13352256-13352124 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 278-411
Cow position: chr25:14537375-14537507 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 127, 0

Conread position: 278-413
Cow position: chr25:27020044-27020178 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 127, 0

Conread position: 289-397
Cow position: chr25:20632168-20632060 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-400
Cow position: chr25:41098907-41099018 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 289-404
Cow position: chr25:34505538-34505653 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-409
Cow position: chr25:24656157-24656277 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 289-411
Cow position: chr25:34510471-34510592 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 289-411
Cow position: chr25:35552966-35552845 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 289-412
Cow position: chr25:32578383-32578505 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 290-412
Cow position: chr25:18191113-18191234 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 370-620
Cow position: chr25:16431590-16431347 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 165
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 181, 13

Conread position: 381-676
Cow position: chr25:32987560-32987261 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 198
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 139, 124

Conread position: 383-607
Cow position: chr25:26455031-26455254 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 142, 8

Conread position: 394-708
Cow position: chr25:29152476-29152166 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 396-561
Cow position: chr25:17558981-17558817 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 142, 0

Conread position: 396-575
Cow position: chr25:18485984-18485805 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 104, 124

Conread position: 396-595
Cow position: chr25:18273200-18273006 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 71, 0

Conread position: 396-595
Cow position: chr25:34238642-34238446 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 396-624
Cow position: chr25:13062126-13061899 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-631
Cow position: chr25:29358066-29358298 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 396-632
Cow position: chr25:4532925-4532691 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 85, 140

Conread position: 396-634
Cow position: chr25:32581106-32581343 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-699
Cow position: chr25:20346399-20346098 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-719
Cow position: chr25:11931211-11930884 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 206

Conread position: 396-719
Cow position: chr25:18251352-18251044 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 188, 118

Conread position: 396-719
Cow position: chr25:19922124-19922445 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 396-722
Cow position: chr25:18178269-18178598 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 109

Conread position: 396-723
Cow position: chr25:26928860-26929187 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 99

Conread position: 396-726
Cow position: chr25:2368583-2368901 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 396-726
Cow position: chr25:13771962-13771642 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 155, 0

Conread position: 396-728
Cow position: chr25:35588751-35588421 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 116

Conread position: 396-730
Cow position: chr25:35627864-35627536 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 396-731
Cow position: chr25:11041933-11042256 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 396-731
Cow position: chr25:16924818-16924486 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 396-731
Cow position: chr25:17587983-17587651 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 103

Conread position: 396-731
Cow position: chr25:19339015-19338683 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 396-731
Cow position: chr25:33260809-33261123 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 221
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 396-731
Cow position: chr25:41309532-41309207 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 225
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 158, 15

Conread position: 396-731
Cow position: chr25:41406664-41406986 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 225
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 133, 15

Conread position: 397-638
Cow position: chr25:33575354-33575119 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 146, 0

Conread position: 397-683
Cow position: chr25:20098000-20098281 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 143

Conread position: 397-723
Cow position: chr25:23847640-23847337 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 397-728
Cow position: chr25:10944005-10943676 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 221
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 86, 156

Conread position: 398-638
Cow position: chr25:18210581-18210343 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 47, 40

Conread position: 398-649
Cow position: chr25:25288560-25288807 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 152, 0

Conread position: 398-719
Cow position: chr25:22149127-22149461 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 227

Conread position: 398-730
Cow position: chr25:13782633-13782963 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr25:13693082-13692751 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 398-731
Cow position: chr25:18305724-18306063 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 95

Conread position: 398-731
Cow position: chr25:18888158-18887827 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr25:20631210-20631540 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr25:25508293-25508619 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 398-731
Cow position: chr25:27021010-27020681 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 398-731
Cow position: chr25:34345418-34345088 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 400-722
Cow position: chr25:26988671-26988980 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 52, 81

Conread position: 404-620
Cow position: chr25:12757530-12757311 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 137, 167

Conread position: 405-731
Cow position: chr25:30313852-30313539 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 212
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 410-731
Cow position: chr25:24215899-24215585 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 223
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 17, 105

Conread position: 413-708
Cow position: chr25:19018584-19018300 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 203
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 130, 199

Conread position: 414-640
Cow position: chr25:18450937-18451159 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 122, 0

Conread position: 415-729
Cow position: chr25:40140092-40139788 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 117, 0

Conread position: 417-731
Cow position: chr25:12941068-12940756 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 420-731
Cow position: chr25:28861214-28861524 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 123

Conread position: 425-719
Cow position: chr25:18325221-18324922 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 208
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 146, 29

Conread position: 425-731
Cow position: chr25:39556206-39555916 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 174, 10

Conread position: 436-694
Cow position: chr25:21545581-21545833 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 173
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 141, 81

Conread position: 438-731
Cow position: chr25:17656029-17656315 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 47

Conread position: 443-731
Cow position: chr25:27522994-27522713 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 445-731
Cow position: chr25:13958435-13958724 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 206

Conread position: 448-708
Cow position: chr25:24055233-24055499 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 175
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 91

Conread position: 448-730
Cow position: chr25:18192016-18191740 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 453-638
Cow position: chr25:14956844-14956664 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 143
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 96, 0

Conread position: 454-603
Cow position: chr25:33664481-33664334 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 471-718
Cow position: chr25:17548655-17548410 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 475-723
Cow position: chr25:30285916-30285675 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 7, 63

Conread position: 489-731
Cow position: chr25:34506407-34506168 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 146
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 0

Conread position: 493-730
Cow position: chr25:21965670-21965896 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 106, 0

Conread position: 537-730
Cow position: chr25:1077165-1077362 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 542-706
Cow position: chr25:30267252-30267420 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 78, 110

Conread position: 542-724
Cow position: chr25:17558437-17558256 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 147
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 105, 0

Conread position: 543-731
Cow position: chr25:26354083-26354259 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 48, 59

Conread position: 558-731
Cow position: chr25:14538182-14538011 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 144
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 47, 0

Conread position: 579-708
Cow position: chr25:35649165-35649037 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 110
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 68, 0

Conread position: 580-730
Cow position: chr25:29308162-29308311 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 67

Conread position: 592-727
Cow position: chr25:38616954-38616820 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 627-731
Cow position: chr25:32579085-32578983 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 0

Show alignments to all cow chromosomes.