Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056B14.3 |
| Conread position: | 278-397 |
| Cow position: | chr27:22742886-22743005 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 278-397 |
| Cow position: | chr27:26327558-26327439 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 278-409 |
| Cow position: | chr27:22797950-22798081 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 278-411 |
| Cow position: | chr27:797111-797243 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 278-411 |
| Cow position: | chr27:1520177-1520045 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 278-411 |
| Cow position: | chr27:1676036-1676169 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 44, 128 |
| Conread position: | 278-411 |
| Cow position: | chr27:12147147-12147279 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 278-411 |
| Cow position: | chr27:13352793-13352661 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 278-411 |
| Cow position: | chr27:18696837-18696705 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 289-397 |
| Cow position: | chr27:15273590-15273696 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 289-403 |
| Cow position: | chr27:15034607-15034721 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 289-410 |
| Cow position: | chr27:28294374-28294494 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 290-397 |
| Cow position: | chr27:13900381-13900274 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 291-397 |
| Cow position: | chr27:3995406-3995512 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-397 |
| Cow position: | chr27:10324616-10324716 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 392-719 |
| Cow position: | chr27:23741436-23741115 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 65 |
| Conread position: | 394-717 |
| Cow position: | chr27:11486791-11487125 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 395-728 |
| Cow position: | chr27:25034880-25034559 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 395-731 |
| Cow position: | chr27:27194820-27194486 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 158, 110 |
| Conread position: | 396-537 |
| Cow position: | chr27:1900501-1900360 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 396-570 |
| Cow position: | chr27:29056697-29056870 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 396-643 |
| Cow position: | chr27:10327193-10326946 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 148 |
| Conread position: | 396-713 |
| Cow position: | chr27:28893145-28893456 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 396-719 |
| Cow position: | chr27:167391-167070 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 396-719 |
| Cow position: | chr27:15274530-15274213 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 74 |
| Conread position: | 396-731 |
| Cow position: | chr27:798030-797697 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 396-731 |
| Cow position: | chr27:2378063-2378382 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 396-731 |
| Cow position: | chr27:8735708-8736040 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 396-731 |
| Cow position: | chr27:16032866-16032535 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 396-731 |
| Cow position: | chr27:16264511-16264201 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 396-731 |
| Cow position: | chr27:25058444-25058768 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 396-731 |
| Cow position: | chr27:25085090-25085429 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 37 |
| Conread position: | 396-731 |
| Cow position: | chr27:25872112-25872446 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 250, 24 |
| Conread position: | 397-731 |
| Cow position: | chr27:1677034-1676705 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 397-731 |
| Cow position: | chr27:9386617-9386942 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 275, 59 |
| Conread position: | 398-717 |
| Cow position: | chr27:19525084-19525402 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 111 |
| Conread position: | 398-719 |
| Cow position: | chr27:3233983-3233665 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 398-721 |
| Cow position: | chr27:28079947-28080267 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 398-722 |
| Cow position: | chr27:13898851-13899168 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 398-725 |
| Cow position: | chr27:9331273-9331605 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 143 |
| Conread position: | 398-731 |
| Cow position: | chr27:1210895-1211226 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 398-731 |
| Cow position: | chr27:4980911-4981239 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 111 |
| Conread position: | 398-731 |
| Cow position: | chr27:5912457-5912781 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 44 |
| Conread position: | 398-731 |
| Cow position: | chr27:8199347-8199678 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 398-731 |
| Cow position: | chr27:9991677-9991346 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 398-731 |
| Cow position: | chr27:15035572-15035240 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 250 |
| Conread position: | 398-731 |
| Cow position: | chr27:15635804-15635473 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 398-731 |
| Cow position: | chr27:26326600-26326931 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 398-731 |
| Cow position: | chr27:27664534-27664862 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 110 |
| Conread position: | 402-730 |
| Cow position: | chr27:25803153-25802826 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 220 |
| Conread position: | 402-731 |
| Cow position: | chr27:12748579-12748907 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 404-640 |
| Cow position: | chr27:29856239-29856480 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 404-726 |
| Cow position: | chr27:15373382-15373709 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 127, 181 |
| Conread position: | 410-719 |
| Cow position: | chr27:26553890-26553586 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 133 |
| Conread position: | 410-731 |
| Cow position: | chr27:23319411-23319091 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 129 |
| Conread position: | 428-727 |
| Cow position: | chr27:27150071-27150364 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 179, 34 |
| Conread position: | 449-727 |
| Cow position: | chr27:23293135-23293405 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 464-725 |
| Cow position: | chr27:22673628-22673892 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 472-731 |
| Cow position: | chr27:24715076-24715332 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 483-719 |
| Cow position: | chr27:23409546-23409760 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 517-730 |
| Cow position: | chr27:8590730-8590944 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 41, 138 |
| Conread position: | 541-717 |
| Cow position: | chr27:24574421-24574245 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 39 |
| Conread position: | 542-730 |
| Cow position: | chr27:5995797-5995600 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 542-731 |
| Cow position: | chr27:21285504-21285324 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 544-728 |
| Cow position: | chr27:6016109-6016291 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 555-730 |
| Cow position: | chr27:10377434-10377608 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 568-731 |
| Cow position: | chr27:30448833-30448670 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 124, 85 |
| Conread position: | 577-731 |
| Cow position: | chr27:31270586-31270739 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 579-731 |
| Cow position: | chr27:27288214-27288364 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 582-731 |
| Cow position: | chr27:23216334-23216189 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.