Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8056C10.5
        

               Conread position:
               7-230
               

               Cow position:
               chr5:56339080-56338861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               64, 24
               

               Conread position:
               7-305
               

               Cow position:
               chr5:65967797-65967504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               9-285
               

               Cow position:
               chr5:66466259-66466526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               132, 7
               

               Conread position:
               11-189
               

               Cow position:
               chr5:9390487-9390676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               11-298
               

               Cow position:
               chr5:43923216-43922945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               210
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               53, 125
               

               Conread position:
               13-231
               

               Cow position:
               chr5:23168885-23168665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               13-236
               

               Cow position:
               chr5:24175311-24175536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               39, 99
               

               Conread position:
               13-314
               

               Cow position:
               chr5:63114533-63114225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               13-315
               

               Cow position:
               chr5:41303145-41302832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               14-123
               

               Cow position:
               chr5:24485492-24485382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               90
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               14-129
               

               Cow position:
               chr5:32956151-32956036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               90
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-129
               

               Cow position:
               chr5:54713786-54713673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               92
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               14-136
               

               Cow position:
               chr5:21964232-21964354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               102
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               14, 50
               

               Conread position:
               14-137
               

               Cow position:
               chr5:29980042-29979916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               102
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               14-158
               

               Cow position:
               chr5:41951149-41951008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               125, 49
               

               Conread position:
               14-167
               

               Cow position:
               chr5:40039825-40039669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               60, 44
               

               Conread position:
               14-169
               

               Cow position:
               chr5:34192846-34193005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               52, 137
               

               Conread position:
               14-173
               

               Cow position:
               chr5:4617312-4617469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               101, 54
               

               Conread position:
               14-178
               

               Cow position:
               chr5:11965384-11965222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               14-186
               

               Cow position:
               chr5:55928886-55929060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               56, 153
               

               Conread position:
               14-189
               

               Cow position:
               chr5:58793664-58793488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               61, 44
               

               Conread position:
               14-191
               

               Cow position:
               chr5:52645134-52644959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               125, 49
               

               Conread position:
               14-192
               

               Cow position:
               chr5:65883828-65883651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               125, 44
               

               Conread position:
               14-196
               

               Cow position:
               chr5:65588648-65588827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               125, 14
               

               Conread position:
               14-197
               

               Cow position:
               chr5:26150476-26150294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               125, 41
               

               Conread position:
               14-197
               

               Cow position:
               chr5:42744733-42744907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               14-197
               

               Cow position:
               chr5:63964221-63964038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               125, 17
               

               Conread position:
               14-200
               

               Cow position:
               chr5:15598288-15598108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               59, 14
               

               Conread position:
               14-201
               

               Cow position:
               chr5:1461032-1461220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               14-201
               

               Cow position:
               chr5:50821727-50821914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               127, 70
               

               Conread position:
               14-205
               

               Cow position:
               chr5:28927644-28927458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               58, 117
               

               Conread position:
               14-205
               

               Cow position:
               chr5:52000167-52000353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               14-206
               

               Cow position:
               chr5:58856049-58856238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               151
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               14-206
               

               Cow position:
               chr5:62142615-62142812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               159
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               17, 48
               

               Conread position:
               14-209
               

               Cow position:
               chr5:359997-359800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               80, 49
               

               Conread position:
               14-209
               

               Cow position:
               chr5:18898923-18899112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               14-209
               

               Cow position:
               chr5:22643280-22643093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               37, 52
               

               Conread position:
               14-209
               

               Cow position:
               chr5:27411452-27411262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               125, 51
               

               Conread position:
               14-209
               

               Cow position:
               chr5:29515551-29515366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               14-209
               

               Cow position:
               chr5:35785036-35784850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               161, 17
               

               Conread position:
               14-209
               

               Cow position:
               chr5:39258461-39258644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               161
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               14-209
               

               Cow position:
               chr5:41713242-41713438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               59, 28
               

               Conread position:
               14-209
               

               Cow position:
               chr5:56680194-56680395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               14-212
               

               Cow position:
               chr5:14473468-14473261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               14-212
               

               Cow position:
               chr5:57737049-57737241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               125, 41
               

               Conread position:
               14-213
               

               Cow position:
               chr5:29771461-29771671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               14-213
               

               Cow position:
               chr5:47323410-47323605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 49
               

               Conread position:
               14-213
               

               Cow position:
               chr5:59325890-59325698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               110, 43
               

               Conread position:
               14-214
               

               Cow position:
               chr5:72564707-72564908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               41, 52
               

               Conread position:
               14-214
               

               Cow position:
               chr5:75436942-75436745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               125, 54
               

               Conread position:
               14-217
               

               Cow position:
               chr5:29844224-29844428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               124, 51
               

               Conread position:
               14-217
               

               Cow position:
               chr5:56524114-56524321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               14-217
               

               Cow position:
               chr5:57640023-57639828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               125, 58
               

               Conread position:
               14-220
               

               Cow position:
               chr5:28302802-28302593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               53, 10
               

               Conread position:
               14-221
               

               Cow position:
               chr5:7697950-7698151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               130, 44
               

               Conread position:
               14-221
               

               Cow position:
               chr5:35125998-35126206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               164
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               41, 46
               

               Conread position:
               14-223
               

               Cow position:
               chr5:36855150-36855359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               100, 51
               

               Conread position:
               14-223
               

               Cow position:
               chr5:41545949-41545740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               122, 36
               

               Conread position:
               14-223
               

               Cow position:
               chr5:62378736-62378933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               145, 40
               

               Conread position:
               14-224
               

               Cow position:
               chr5:23529335-23529128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               61, 43
               

               Conread position:
               14-224
               

               Cow position:
               chr5:68330043-68329833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               125, 25
               

               Conread position:
               14-225
               

               Cow position:
               chr5:50533442-50533233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               57, 118
               

               Conread position:
               14-225
               

               Cow position:
               chr5:63987506-63987290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               14-225
               

               Cow position:
               chr5:64592149-64591940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               129, 14
               

               Conread position:
               14-229
               

               Cow position:
               chr5:67212301-67212519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 181
               

               Conread position:
               14-230
               

               Cow position:
               chr5:1087252-1087042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               126, 48
               

               Conread position:
               14-230
               

               Cow position:
               chr5:43929792-43929578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               55, 7
               

               Conread position:
               14-232
               

               Cow position:
               chr5:16206210-16205993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               173
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               41, 46
               

               Conread position:
               14-232
               

               Cow position:
               chr5:30949971-30949751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 17
               

               Conread position:
               14-232
               

               Cow position:
               chr5:34300861-34301078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               58, 114
               

               Conread position:
               14-232
               

               Cow position:
               chr5:37808724-37808502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               44, 17
               

               Conread position:
               14-232
               

               Cow position:
               chr5:43992267-43992486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               14-232
               

               Cow position:
               chr5:45420189-45419977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               126, 48
               

               Conread position:
               14-232
               

               Cow position:
               chr5:54060222-54060438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               125, 31
               

               Conread position:
               14-232
               

               Cow position:
               chr5:54767964-54767747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               170
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               126, 49
               

               Conread position:
               14-232
               

               Cow position:
               chr5:55019240-55019453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               126, 14
               

               Conread position:
               14-232
               

               Cow position:
               chr5:56317242-56317451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               14-232
               

               Cow position:
               chr5:59873146-59872918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               14-233
               

               Cow position:
               chr5:60715413-60715205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               14-234
               

               Cow position:
               chr5:34528500-34528709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               179
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               174, 30
               

               Conread position:
               14-237
               

               Cow position:
               chr5:7723611-7723830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               71, 25
               

               Conread position:
               14-237
               

               Cow position:
               chr5:17028038-17028262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               118, 214
               

               Conread position:
               14-237
               

               Cow position:
               chr5:27102849-27102627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               42, 29
               

               Conread position:
               14-237
               

               Cow position:
               chr5:27419784-27419562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               62, 30
               

               Conread position:
               14-237
               

               Cow position:
               chr5:28946117-28945893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               57, 105
               

               Conread position:
               14-248
               

               Cow position:
               chr5:54375562-54375325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               53, 81
               

               Conread position:
               14-252
               

               Cow position:
               chr5:7193365-7193593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               125, 14
               

               Conread position:
               14-258
               

               Cow position:
               chr5:66366452-66366695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               53, 201
               

               Conread position:
               14-264
               

               Cow position:
               chr5:60183746-60183992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               101, 200
               

               Conread position:
               14-275
               

               Cow position:
               chr5:57419846-57419593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 17
               

               Conread position:
               14-275
               

               Cow position:
               chr5:64697730-64697991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               210, 44
               

               Conread position:
               14-281
               

               Cow position:
               chr5:35826548-35826807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               58, 30
               

               Conread position:
               14-281
               

               Cow position:
               chr5:59330803-59330530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               39, 199
               

               Conread position:
               14-284
               

               Cow position:
               chr5:37646019-37646287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               52, 30
               

               Conread position:
               14-286
               

               Cow position:
               chr5:34109114-34108843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               126, 50
               

               Conread position:
               14-286
               

               Cow position:
               chr5:45397517-45397779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               196
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               14-286
               

               Cow position:
               chr5:53946840-53947113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 59
               

               Conread position:
               14-286
               

               Cow position:
               chr5:63234881-63234609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 97
               

               Conread position:
               14-287
               

               Cow position:
               chr5:17555087-17554820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               50, 14
               

               Conread position:
               14-288
               

               Cow position:
               chr5:6503938-6503660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               14-290
               

               Cow position:
               chr5:58144656-58144386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               124, 44
               

               Conread position:
               14-292
               

               Cow position:
               chr5:42845652-42845377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 217
               

               Conread position:
               14-292
               

               Cow position:
               chr5:55966934-55966652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               125, 39
               

               Conread position:
               14-292
               

               Cow position:
               chr5:74643726-74643464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               130, 46
               

               Conread position:
               14-293
               

               Cow position:
               chr5:68604803-68605084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               15, 41
               

               Conread position:
               14-294
               

               Cow position:
               chr5:9894184-9893903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               15, 196
               

               Conread position:
               14-294
               

               Cow position:
               chr5:21617402-21617677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               127, 36
               

               Conread position:
               14-294
               

               Cow position:
               chr5:35684881-35685155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               187, 123
               

               Conread position:
               14-294
               

               Cow position:
               chr5:41884881-41885136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               19, 55
               

               Conread position:
               14-294
               

               Cow position:
               chr5:42050496-42050766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               57, 24
               

               Conread position:
               14-294
               

               Cow position:
               chr5:42670918-42670651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               105, 44
               

               Conread position:
               14-294
               

               Cow position:
               chr5:49474604-49474332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 184
               

               Conread position:
               14-294
               

               Cow position:
               chr5:57935164-57934898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               125, 41
               

               Conread position:
               14-294
               

               Cow position:
               chr5:74858517-74858809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               53, 265
               

               Conread position:
               14-295
               

               Cow position:
               chr5:3771793-3772065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 87
               

               Conread position:
               14-295
               

               Cow position:
               chr5:7012903-7012626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 54
               

               Conread position:
               14-295
               

               Cow position:
               chr5:19278755-19278480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               99, 38
               

               Conread position:
               14-295
               

               Cow position:
               chr5:30253686-30253963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 47
               

               Conread position:
               14-295
               

               Cow position:
               chr5:39447591-39447302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 36
               

               Conread position:
               14-295
               

               Cow position:
               chr5:44848075-44847804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               102, 48
               

               Conread position:
               14-295
               

               Cow position:
               chr5:57756086-57755811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 91
               

               Conread position:
               14-295
               

               Cow position:
               chr5:62172359-62172621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               125, 41
               

               Conread position:
               14-297
               

               Cow position:
               chr5:67932519-67932241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               212
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               126, 23
               

               Conread position:
               14-298
               

               Cow position:
               chr5:5855808-5856086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 27
               

               Conread position:
               14-298
               

               Cow position:
               chr5:7044762-7044480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               54, 41
               

               Conread position:
               14-298
               

               Cow position:
               chr5:7057455-7057171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 45
               

               Conread position:
               14-298
               

               Cow position:
               chr5:11769213-11769498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 65
               

               Conread position:
               14-298
               

               Cow position:
               chr5:14904127-14903840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 243
               

               Conread position:
               14-298
               

               Cow position:
               chr5:15479069-15479355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 166
               

               Conread position:
               14-298
               

               Cow position:
               chr5:16179580-16179297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               52, 75
               

               Conread position:
               14-298
               

               Cow position:
               chr5:18574118-18574408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 130
               

               Conread position:
               14-298
               

               Cow position:
               chr5:26467568-26467853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               67, 201
               

               Conread position:
               14-298
               

               Cow position:
               chr5:30302838-30303107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               58, 71
               

               Conread position:
               14-298
               

               Cow position:
               chr5:32339019-32338735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               109, 17
               

               Conread position:
               14-298
               

               Cow position:
               chr5:41165031-41165308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 39
               

               Conread position:
               14-298
               

               Cow position:
               chr5:43402845-43403135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 183
               

               Conread position:
               14-298
               

               Cow position:
               chr5:43604088-43604365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               14-298
               

               Cow position:
               chr5:45845747-45845464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               58, 17
               

               Conread position:
               14-298
               

               Cow position:
               chr5:47871098-47870828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 88
               

               Conread position:
               14-298
               

               Cow position:
               chr5:52165233-52164947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 54
               

               Conread position:
               14-298
               

               Cow position:
               chr5:55955852-55956136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 58
               

               Conread position:
               14-298
               

               Cow position:
               chr5:61455790-61456074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 119
               

               Conread position:
               14-298
               

               Cow position:
               chr5:62870097-62869837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               116, 10
               

               Conread position:
               14-298
               

               Cow position:
               chr5:64321697-64321988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               18, 56
               

               Conread position:
               14-299
               

               Cow position:
               chr5:26990337-26990614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               48, 90
               

               Conread position:
               14-305
               

               Cow position:
               chr5:35459351-35459063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 206
               

               Conread position:
               14-305
               

               Cow position:
               chr5:53835658-53835956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               65, 44
               

               Conread position:
               14-306
               

               Cow position:
               chr5:61725913-61726191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               129, 17
               

               Conread position:
               14-311
               

               Cow position:
               chr5:47601764-47602046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               216
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               129, 41
               

               Conread position:
               14-312
               

               Cow position:
               chr5:34561957-34562250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               31, 193
               

               Conread position:
               14-312
               

               Cow position:
               chr5:57526973-57526687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 74
               

               Conread position:
               14-314
               

               Cow position:
               chr5:21828811-21829104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               125, 148
               

               Conread position:
               14-314
               

               Cow position:
               chr5:24996278-24995979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               213
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               61, 49
               

               Conread position:
               14-314
               

               Cow position:
               chr5:59082250-59081949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               73, 44
               

               Conread position:
               14-315
               

               Cow position:
               chr5:45225879-45225581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 139
               

               Conread position:
               14-316
               

               Cow position:
               chr5:42064148-42064450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 291
               

               Conread position:
               14-317
               

               Cow position:
               chr5:35208208-35208507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 50
               

               Conread position:
               14-317
               

               Cow position:
               chr5:59627029-59626727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 175
               

               Conread position:
               14-319
               

               Cow position:
               chr5:35247165-35246859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 17
               

               Conread position:
               14-320
               

               Cow position:
               chr5:44446923-44446629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               78, 203
               

               Conread position:
               14-320
               

               Cow position:
               chr5:63627580-63627290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               288, 30
               

               Conread position:
               14-323
               

               Cow position:
               chr5:52729072-52728760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               215
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               126, 67
               

               Conread position:
               14-324
               

               Cow position:
               chr5:4280393-4280696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 43
               

               Conread position:
               14-324
               

               Cow position:
               chr5:19335839-19335523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               14-325
               

               Cow position:
               chr5:29097312-29097615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               126, 41
               

               Conread position:
               14-326
               

               Cow position:
               chr5:11427290-11426982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 36
               

               Conread position:
               14-326
               

               Cow position:
               chr5:35235764-35235434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               53, 301
               

               Conread position:
               14-327
               

               Cow position:
               chr5:43371250-43370936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               126, 41
               

               Conread position:
               14-329
               

               Cow position:
               chr5:46512818-46512511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               222
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               128, 41
               

               Conread position:
               14-329
               

               Cow position:
               chr5:66581910-66582223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 44
               

               Conread position:
               14-330
               

               Cow position:
               chr5:57074388-57074081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               231
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               54, 22
               

               Conread position:
               14-331
               

               Cow position:
               chr5:20995150-20994827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 244
               

               Conread position:
               14-335
               

               Cow position:
               chr5:12673523-12673219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               216
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               14-343
               

               Cow position:
               chr5:55176835-55177148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               238
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               72, 43
               

               Conread position:
               14-346
               

               Cow position:
               chr5:60952600-60952936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               225
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               43, 105
               

               Conread position:
               14-347
               

               Cow position:
               chr5:26262729-26262411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               238
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               224, 21
               

               Conread position:
               15-201
               

               Cow position:
               chr5:64758825-64758636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               18, 11
               

               Conread position:
               15-209
               

               Cow position:
               chr5:41452722-41452533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               54, 113
               

               Conread position:
               15-231
               

               Cow position:
               chr5:34887254-34887034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               14, 48
               

               Conread position:
               15-232
               

               Cow position:
               chr5:46509921-46509702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               58, 33
               

               Conread position:
               15-283
               

               Cow position:
               chr5:60016113-60016375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               15-285
               

               Cow position:
               chr5:16893827-16893565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               200
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               122, 181
               

               Conread position:
               15-287
               

               Cow position:
               chr5:64523921-64523649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 30
               

               Conread position:
               15-295
               

               Cow position:
               chr5:14314471-14314739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               53, 43
               

               Conread position:
               15-298
               

               Cow position:
               chr5:14345149-14344870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               125, 38
               

               Conread position:
               15-298
               

               Cow position:
               chr5:34624903-34625174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               212
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               118, 183
               

               Conread position:
               15-298
               

               Cow position:
               chr5:53842229-53842517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               87, 53
               

               Conread position:
               15-298
               

               Cow position:
               chr5:66257584-66257860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               15-298
               

               Cow position:
               chr5:72895633-72895912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               126, 13
               

               Conread position:
               15-317
               

               Cow position:
               chr5:17999546-17999251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               15-321
               

               Cow position:
               chr5:11668239-11667937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 44
               

               Conread position:
               15-322
               

               Cow position:
               chr5:32153370-32153060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               15-323
               

               Cow position:
               chr5:53055617-53055308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 297
               

               Conread position:
               16-138
               

               Cow position:
               chr5:2500237-2500112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               16-142
               

               Cow position:
               chr5:34107183-34107307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               123, 41
               

               Conread position:
               16-147
               

               Cow position:
               chr5:21920322-21920457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               46, 113
               

               Conread position:
               16-165
               

               Cow position:
               chr5:73080147-73080300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               16-166
               

               Cow position:
               chr5:56820315-56820168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               16-168
               

               Cow position:
               chr5:16509043-16509204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               16-188
               

               Cow position:
               chr5:61840139-61840310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               123, 46
               

               Conread position:
               16-189
               

               Cow position:
               chr5:56635848-56636014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               123, 12
               

               Conread position:
               16-200
               

               Cow position:
               chr5:19813276-19813090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               58, 29
               

               Conread position:
               16-201
               

               Cow position:
               chr5:29903571-29903392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               125, 39
               

               Conread position:
               16-213
               

               Cow position:
               chr5:3639539-3639354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               16-213
               

               Cow position:
               chr5:28224401-28224595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               124, 46
               

               Conread position:
               16-214
               

               Cow position:
               chr5:65887059-65886867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               127, 38
               

               Conread position:
               16-217
               

               Cow position:
               chr5:36255314-36255110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               16-220
               

               Cow position:
               chr5:34463637-34463431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               46, 160
               

               Conread position:
               16-220
               

               Cow position:
               chr5:49685323-49685127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               121, 47
               

               Conread position:
               16-221
               

               Cow position:
               chr5:38689596-38689388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               51, 177
               

               Conread position:
               16-221
               

               Cow position:
               chr5:50215608-50215413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               116, 42
               

               Conread position:
               16-222
               

               Cow position:
               chr5:37190148-37189945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               160
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               125, 44
               

               Conread position:
               16-225
               

               Cow position:
               chr5:4032045-4031831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               16-225
               

               Cow position:
               chr5:4220931-4221132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               77, 47
               

               Conread position:
               16-228
               

               Cow position:
               chr5:59115334-59115539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               197, 48
               

               Conread position:
               16-229
               

               Cow position:
               chr5:3204784-3204985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               122, 37
               

               Conread position:
               16-232
               

               Cow position:
               chr5:9090073-9089866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               119, 23
               

               Conread position:
               16-232
               

               Cow position:
               chr5:13717620-13717408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               123, 42
               

               Conread position:
               16-232
               

               Cow position:
               chr5:40559584-40559795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               124, 47
               

               Conread position:
               16-232
               

               Cow position:
               chr5:53855645-53855868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               16-232
               

               Cow position:
               chr5:63427060-63426844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 39
               

               Conread position:
               16-236
               

               Cow position:
               chr5:51935139-51935355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               171
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               123, 49
               

               Conread position:
               16-237
               

               Cow position:
               chr5:19523847-19524067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               124, 38
               

               Conread position:
               16-242
               

               Cow position:
               chr5:53710743-53710519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 39
               

               Conread position:
               16-243
               

               Cow position:
               chr5:63059016-63059237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               42, 102
               

               Conread position:
               16-248
               

               Cow position:
               chr5:22188610-22188848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               100, 178
               

               Conread position:
               16-258
               

               Cow position:
               chr5:28248120-28248361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               124, 39
               

               Conread position:
               16-258
               

               Cow position:
               chr5:71494767-71495008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               54, 10
               

               Conread position:
               16-261
               

               Cow position:
               chr5:30805115-30805347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               16-269
               

               Cow position:
               chr5:68872141-68872392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               121, 34
               

               Conread position:
               16-273
               

               Cow position:
               chr5:12247799-12247540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               42, 158
               

               Conread position:
               16-273
               

               Cow position:
               chr5:47704179-47703924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               42, 50
               

               Conread position:
               16-274
               

               Cow position:
               chr5:55796014-55795768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 13
               

               Conread position:
               16-274
               

               Cow position:
               chr5:64137201-64137460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               24, 14
               

               Conread position:
               16-280
               

               Cow position:
               chr5:64168290-64168029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               16-280
               

               Cow position:
               chr5:65752804-65753068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               56, 175
               

               Conread position:
               16-284
               

               Cow position:
               chr5:29353187-29352920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               205
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               42, 181
               

               Conread position:
               16-284
               

               Cow position:
               chr5:34050063-34050320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               71, 42
               

               Conread position:
               16-285
               

               Cow position:
               chr5:3002864-3003119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               16-285
               

               Cow position:
               chr5:33414462-33414195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               185, 48
               

               Conread position:
               16-285
               

               Cow position:
               chr5:66815623-66815378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               16-287
               

               Cow position:
               chr5:17063143-17062864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 81
               

               Conread position:
               16-287
               

               Cow position:
               chr5:56070803-56071073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               56, 197
               

               Conread position:
               16-287
               

               Cow position:
               chr5:57156367-57156085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               87, 42
               

               Conread position:
               16-291
               

               Cow position:
               chr5:57327744-57328016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               82, 39
               

               Conread position:
               16-293
               

               Cow position:
               chr5:65776435-65776156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               124, 38
               

               Conread position:
               16-294
               

               Cow position:
               chr5:8024248-8023993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               16-294
               

               Cow position:
               chr5:12557345-12557065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               202
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               55, 203
               

               Conread position:
               16-294
               

               Cow position:
               chr5:16214631-16214903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               56, 200
               

               Conread position:
               16-294
               

               Cow position:
               chr5:19752252-19752523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 15
               

               Conread position:
               16-294
               

               Cow position:
               chr5:29827996-29828270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 46
               

               Conread position:
               16-294
               

               Cow position:
               chr5:43858486-43858196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 12
               

               Conread position:
               16-294
               

               Cow position:
               chr5:55756478-55756191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               16-294
               

               Cow position:
               chr5:65941303-65941028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               206
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               43, 12
               

               Conread position:
               16-295
               

               Cow position:
               chr5:32975604-32975335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               16-295
               

               Cow position:
               chr5:40109438-40109707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               55, 37
               

               Conread position:
               16-295
               

               Cow position:
               chr5:47317024-47316752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 43
               

               Conread position:
               16-296
               

               Cow position:
               chr5:11540100-11539828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               207
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               124, 38
               

               Conread position:
               16-298
               

               Cow position:
               chr5:58987-58704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 41
               

               Conread position:
               16-298
               

               Cow position:
               chr5:12901864-12902145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 85
               

               Conread position:
               16-298
               

               Cow position:
               chr5:17087075-17086791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               52, 23
               

               Conread position:
               16-298
               

               Cow position:
               chr5:24136660-24136960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               54, 37
               

               Conread position:
               16-298
               

               Cow position:
               chr5:31475631-31475910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               198
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               124, 49
               

               Conread position:
               16-298
               

               Cow position:
               chr5:34976896-34976613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               201
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               29, 50
               

               Conread position:
               16-298
               

               Cow position:
               chr5:36650497-36650781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               114, 47
               

               Conread position:
               16-298
               

               Cow position:
               chr5:37646599-37646327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 150
               

               Conread position:
               16-298
               

               Cow position:
               chr5:47756722-47756998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               125, 72
               

               Conread position:
               16-298
               

               Cow position:
               chr5:50575732-50575994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               125, 42
               

               Conread position:
               16-298
               

               Cow position:
               chr5:52831413-52831704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               82, 55
               

               Conread position:
               16-298
               

               Cow position:
               chr5:55068653-55068926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               123, 40
               

               Conread position:
               16-298
               

               Cow position:
               chr5:61771061-61771348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               202
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               96, 49
               

               Conread position:
               16-298
               

               Cow position:
               chr5:61912365-61912066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               97, 52
               

               Conread position:
               16-298
               

               Cow position:
               chr5:62107544-62107257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               96, 47
               

               Conread position:
               16-298
               

               Cow position:
               chr5:66972375-66972656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               16-298
               

               Cow position:
               chr5:71845970-71845700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               16-298
               

               Cow position:
               chr5:73168054-73167789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 47
               

               Conread position:
               16-299
               

               Cow position:
               chr5:12434480-12434762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               34, 208
               

               Conread position:
               16-301
               

               Cow position:
               chr5:30629211-30628924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               210
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               125, 15
               

               Conread position:
               16-305
               

               Cow position:
               chr5:3281781-3282070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               122, 43
               

               Conread position:
               16-305
               

               Cow position:
               chr5:19796919-19797219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               46, 142
               

               Conread position:
               16-310
               

               Cow position:
               chr5:30487184-30487464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               23, 51
               

               Conread position:
               16-311
               

               Cow position:
               chr5:19778632-19778327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               100, 49
               

               Conread position:
               16-311
               

               Cow position:
               chr5:37893280-37893584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               123, 42
               

               Conread position:
               16-314
               

               Cow position:
               chr5:57768034-57767748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               16-315
               

               Cow position:
               chr5:56136974-56136677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               126, 134
               

               Conread position:
               16-315
               

               Cow position:
               chr5:63240923-63241223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               16-315
               

               Cow position:
               chr5:73167180-73166895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               121, 43
               

               Conread position:
               16-316
               

               Cow position:
               chr5:18289077-18289362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 52
               

               Conread position:
               16-316
               

               Cow position:
               chr5:24349055-24349360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               123, 49
               

               Conread position:
               16-316
               

               Cow position:
               chr5:39937053-39937359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 105
               

               Conread position:
               16-316
               

               Cow position:
               chr5:53825187-53824870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               82, 46
               

               Conread position:
               16-317
               

               Cow position:
               chr5:44049648-44049947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               70, 42
               

               Conread position:
               16-317
               

               Cow position:
               chr5:61576491-61576793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               25, 35
               

               Conread position:
               16-319
               

               Cow position:
               chr5:72903282-72902995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               219
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               16-320
               

               Cow position:
               chr5:45409269-45409574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               16-322
               

               Cow position:
               chr5:27179607-27179915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               124, 36
               

               Conread position:
               16-322
               

               Cow position:
               chr5:30178560-30178250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               38, 28
               

               Conread position:
               16-322
               

               Cow position:
               chr5:51053703-51053400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 41
               

               Conread position:
               16-323
               

               Cow position:
               chr5:14550634-14550332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               16-323
               

               Cow position:
               chr5:44796784-44796489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 29
               

               Conread position:
               16-323
               

               Cow position:
               chr5:50857883-50858183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               118, 54
               

               Conread position:
               16-324
               

               Cow position:
               chr5:64555476-64555784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               215
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               124, 38
               

               Conread position:
               16-325
               

               Cow position:
               chr5:1247210-1247516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 117
               

               Conread position:
               16-326
               

               Cow position:
               chr5:1688166-1687861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               45, 72
               

               Conread position:
               16-326
               

               Cow position:
               chr5:57591640-57591940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               124, 28
               

               Conread position:
               16-327
               

               Cow position:
               chr5:5111128-5110805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               125, 49
               

               Conread position:
               16-330
               

               Cow position:
               chr5:37941842-37941552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               225
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               16-334
               

               Cow position:
               chr5:34505980-34505659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               225
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               54, 12
               

               Conread position:
               16-335
               

               Cow position:
               chr5:50713824-50713490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               45, 302
               

               Conread position:
               16-342
               

               Cow position:
               chr5:74610745-74610422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               280, 37
               

               Conread position:
               16-345
               

               Cow position:
               chr5:71723015-71723350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               19, 202
               

               Conread position:
               16-347
               

               Cow position:
               chr5:40152425-40152763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               100, 42
               

               Conread position:
               16-349
               

               Cow position:
               chr5:20843453-20843120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 53
               

               Conread position:
               16-349
               

               Cow position:
               chr5:63831874-63832194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               234
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               72, 56
               

               Conread position:
               16-358
               

               Cow position:
               chr5:458438-458788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               252
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               123, 47
               

               Conread position:
               16-358
               

               Cow position:
               chr5:59057802-59057464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               38, 20
               

               Conread position:
               17-186
               

               Cow position:
               chr5:31481094-31481264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               17-213
               

               Cow position:
               chr5:38076539-38076340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               17-237
               

               Cow position:
               chr5:39875073-39875291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               58, 27
               

               Conread position:
               17-282
               

               Cow position:
               chr5:37894940-37895205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               123, 41
               

               Conread position:
               17-305
               

               Cow position:
               chr5:33833992-33834273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 38
               

               Conread position:
               17-305
               

               Cow position:
               chr5:64140481-64140771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 199
               

               Conread position:
               17-315
               

               Cow position:
               chr5:49919871-49920167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 46
               

               Conread position:
               17-316
               

               Cow position:
               chr5:57393354-57393058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               18, 38
               

               Conread position:
               17-326
               

               Cow position:
               chr5:57265957-57265645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               123, 41
               

               Conread position:
               18-167
               

               Cow position:
               chr5:69520840-69520988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               123, 26
               

               Conread position:
               18-190
               

               Cow position:
               chr5:32696874-32696703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               121, 55
               

               Conread position:
               18-197
               

               Cow position:
               chr5:22445863-22446038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               121, 45
               

               Conread position:
               18-212
               

               Cow position:
               chr5:28035690-28035884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               57, 175
               

               Conread position:
               18-214
               

               Cow position:
               chr5:14629864-14629661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 37
               

               Conread position:
               18-222
               

               Cow position:
               chr5:45574564-45574772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               18-223
               

               Cow position:
               chr5:54311284-54311489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               162
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               122, 50
               

               Conread position:
               18-237
               

               Cow position:
               chr5:58320520-58320304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               121, 27
               

               Conread position:
               18-287
               

               Cow position:
               chr5:30845062-30845321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               18-317
               

               Cow position:
               chr5:30418923-30419220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               69, 36
               

               Conread position:
               18-318
               

               Cow position:
               chr5:37255389-37255086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               18-329
               

               Cow position:
               chr5:36039057-36038749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               229
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               52, 37
               

               Conread position:
               19-193
               

               Cow position:
               chr5:23357286-23357452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               19-225
               

               Cow position:
               chr5:21040023-21039830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               19-298
               

               Cow position:
               chr5:15470882-15471144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               19-329
               

               Cow position:
               chr5:74658613-74658921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               9, 22
               

               Conread position:
               20-181
               

               Cow position:
               chr5:57561471-57561634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               20-222
               

               Cow position:
               chr5:41294032-41294233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               164
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               55, 43
               

               Conread position:
               20-224
               

               Cow position:
               chr5:67118369-67118574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               50, 40
               

               Conread position:
               20-237
               

               Cow position:
               chr5:6528626-6528852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               179
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               25, 216
               

               Conread position:
               20-292
               

               Cow position:
               chr5:57994916-57994660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               20-298
               

               Cow position:
               chr5:20128005-20128280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 35
               

               Conread position:
               20-298
               

               Cow position:
               chr5:33560782-33560512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 35
               

               Conread position:
               20-317
               

               Cow position:
               chr5:5938276-5938576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               120, 34
               

               Conread position:
               20-324
               

               Cow position:
               chr5:52052505-52052210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               45, 38
               

               Conread position:
               20-345
               

               Cow position:
               chr5:65140243-65140569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               229
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               73, 33
               

               Conread position:
               21-239
               

               Cow position:
               chr5:58490669-58490902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               21-325
               

               Cow position:
               chr5:25366043-25366351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               52, 173
               

               Conread position:
               22-143
               

               Cow position:
               chr5:12566787-12566668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               117, 27
               

               Conread position:
               22-206
               

               Cow position:
               chr5:67243872-67244054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               17, 9
               

               Conread position:
               22-212
               

               Cow position:
               chr5:27188078-27188257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               22-213
               

               Cow position:
               chr5:65601408-65601599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               9, 34
               

               Conread position:
               22-222
               

               Cow position:
               chr5:45273547-45273350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               117, 32
               

               Conread position:
               22-223
               

               Cow position:
               chr5:12866865-12866675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               22-232
               

               Cow position:
               chr5:26477067-26476856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               9, 20
               

               Conread position:
               22-240
               

               Cow position:
               chr5:26094217-26093996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               172
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               9, 146
               

               Conread position:
               22-275
               

               Cow position:
               chr5:48829110-48829358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               117, 36
               

               Conread position:
               22-294
               

               Cow position:
               chr5:35969486-35969762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 39
               

               Conread position:
               22-317
               

               Cow position:
               chr5:1987559-1987859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               9, 168
               

               Conread position:
               22-321
               

               Cow position:
               chr5:63647521-63647229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               119, 40
               

               Conread position:
               22-351
               

               Cow position:
               chr5:15363833-15364149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               56, 43
               

               Conread position:
               23-213
               

               Cow position:
               chr5:54086497-54086681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               23-284
               

               Cow position:
               chr5:26097249-26097502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 31
               

               Conread position:
               23-292
               

               Cow position:
               chr5:61784774-61784505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 53
               

               Conread position:
               24-266
               

               Cow position:
               chr5:453514-453745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               115, 39
               

               Conread position:
               24-286
               

               Cow position:
               chr5:49501870-49501604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 41
               

               Conread position:
               26-232
               

               Cow position:
               chr5:41981327-41981530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 101
               

               Conread position:
               29-275
               

               Cow position:
               chr5:23912242-23911995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               30-237
               

               Cow position:
               chr5:34914594-34914385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               49, 199
               

               Conread position:
               30-295
               

               Cow position:
               chr5:54875739-54875470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 48
               

               Conread position:
               31-209
               

               Cow position:
               chr5:46322835-46322664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               112, 16
               

               Conread position:
               31-213
               

               Cow position:
               chr5:36838919-36839102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               22, 162
               

               Conread position:
               31-232
               

               Cow position:
               chr5:58446768-58446970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               109, 32
               

               Conread position:
               31-267
               

               Cow position:
               chr5:61007026-61007262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               10, 43
               

               Conread position:
               31-275
               

               Cow position:
               chr5:50482902-50482655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               85, 31
               

               Conread position:
               31-293
               

               Cow position:
               chr5:22667039-22667291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               108, 30
               

               Conread position:
               31-295
               

               Cow position:
               chr5:30247558-30247302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 23
               

               Conread position:
               31-317
               

               Cow position:
               chr5:50101416-50101133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 190
               

               Conread position:
               32-172
               

               Cow position:
               chr5:45148400-45148268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               110
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               32-178
               

               Cow position:
               chr5:31918608-31918750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               32-201
               

               Cow position:
               chr5:40237176-40237342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               46, 31
               

               Conread position:
               32-205
               

               Cow position:
               chr5:27306266-27306439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               9, 55
               

               Conread position:
               32-209
               

               Cow position:
               chr5:2851551-2851729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               37, 98
               

               Conread position:
               32-209
               

               Cow position:
               chr5:56153577-56153754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               41, 93
               

               Conread position:
               32-209
               

               Cow position:
               chr5:56517065-56517243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               38, 31
               

               Conread position:
               32-209
               

               Cow position:
               chr5:60747315-60747142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               32-217
               

               Cow position:
               chr5:57101819-57101636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               42, 104
               

               Conread position:
               32-218
               

               Cow position:
               chr5:69731466-69731648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               46, 69
               

               Conread position:
               32-219
               

               Cow position:
               chr5:35982778-35982586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               32-232
               

               Cow position:
               chr5:23678739-23678541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               158
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               35, 104
               

               Conread position:
               32-234
               

               Cow position:
               chr5:44752354-44752143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               32-292
               

               Cow position:
               chr5:20779433-20779178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               107, 17
               

               Conread position:
               32-295
               

               Cow position:
               chr5:29060958-29060716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               32-304
               

               Cow position:
               chr5:47696481-47696227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               34, 12
               

               Conread position:
               32-316
               

               Cow position:
               chr5:50723012-50723289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 15
               

               Conread position:
               32-317
               

               Cow position:
               chr5:22242813-22242532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               26, 193
               

               Conread position:
               32-317
               

               Cow position:
               chr5:68537704-68537417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               208
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               40, 7
               

               Conread position:
               32-323
               

               Cow position:
               chr5:16025498-16025233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               126, 26
               

               Conread position:
               32-323
               

               Cow position:
               chr5:44994079-44993792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               25, 37
               

               Conread position:
               32-327
               

               Cow position:
               chr5:70678677-70678392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               109, 31
               

               Conread position:
               32-332
               

               Cow position:
               chr5:56014692-56014981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               106, 180
               

               Conread position:
               32-345
               

               Cow position:
               chr5:6444188-6443868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               104, 31
               

               Conread position:
               33-193
               

               Cow position:
               chr5:32673098-32672944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               109, 29
               

               Conread position:
               33-271
               

               Cow position:
               chr5:54350399-54350172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 182
               

               Conread position:
               33-273
               

               Cow position:
               chr5:57686777-57686540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               35, 185
               

               Conread position:
               33-298
               

               Cow position:
               chr5:32394564-32394828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 21
               

               Conread position:
               34-194
               

               Cow position:
               chr5:29371453-29371614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               34-225
               

               Cow position:
               chr5:61102679-61102871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               38, 27
               

               Conread position:
               34-232
               

               Cow position:
               chr5:22795178-22795376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               33, 15
               

               Conread position:
               34-232
               

               Cow position:
               chr5:55061890-55062088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               103, 173
               

               Conread position:
               34-235
               

               Cow position:
               chr5:72006528-72006324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               34-248
               

               Cow position:
               chr5:52083301-52083519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               55, 83
               

               Conread position:
               34-252
               

               Cow position:
               chr5:69461295-69461515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               38, 106
               

               Conread position:
               34-275
               

               Cow position:
               chr5:60741209-60741448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               106, 16
               

               Conread position:
               34-287
               

               Cow position:
               chr5:20288299-20288043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               105, 31
               

               Conread position:
               34-289
               

               Cow position:
               chr5:66551934-66551675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               38, 31
               

               Conread position:
               34-295
               

               Cow position:
               chr5:69337788-69338037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               105, 27
               

               Conread position:
               34-298
               

               Cow position:
               chr5:51065496-51065742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               107, 29
               

               Conread position:
               34-311
               

               Cow position:
               chr5:63192777-63192515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               34-315
               

               Cow position:
               chr5:44028340-44028068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               38, 29
               

               Conread position:
               34-320
               

               Cow position:
               chr5:38068701-38068415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               105, 21
               

               Conread position:
               34-322
               

               Cow position:
               chr5:41935688-41935409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 99
               

               Conread position:
               34-323
               

               Cow position:
               chr5:52001656-52001372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 47
               

               Conread position:
               34-337
               

               Cow position:
               chr5:59395622-59395930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               219
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               82, 39
               

               Conread position:
               35-252
               

               Cow position:
               chr5:17602235-17602025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               106, 20
               

               Conread position:
               35-295
               

               Cow position:
               chr5:30232871-30233133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               39, 141
               

               Conread position:
               35-321
               

               Cow position:
               chr5:62811789-62812074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               106, 23
               

               Conread position:
               35-322
               

               Cow position:
               chr5:60210178-60209897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               207
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               105, 23
               

               Conread position:
               36-209
               

               Cow position:
               chr5:76366327-76366156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               104, 18
               

               Conread position:
               36-232
               

               Cow position:
               chr5:56211868-56212070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               36-254
               

               Cow position:
               chr5:3588993-3589211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               36, 62
               

               Conread position:
               36-293
               

               Cow position:
               chr5:37983130-37983392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               74, 27
               

               Conread position:
               36-295
               

               Cow position:
               chr5:69099685-69099942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               36, 22
               

               Conread position:
               36-298
               

               Cow position:
               chr5:26549175-26548917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               107, 176
               

               Conread position:
               36-311
               

               Cow position:
               chr5:33273657-33273937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 107
               

               Conread position:
               37-317
               

               Cow position:
               chr5:32935710-32935994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               51, 83
               

               Conread position:
               37-327
               

               Cow position:
               chr5:270134-269843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               51, 44
               

               Conread position:
               37-328
               

               Cow position:
               chr5:38833089-38833368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               104, 75
               

               Conread position:
               38-298
               

               Cow position:
               chr5:12322838-12322585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               40, 94
               

               Conread position:
               39-200
               

               Cow position:
               chr5:45574398-45574235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               12, 26
               

               Conread position:
               39-229
               

               Cow position:
               chr5:38739429-38739246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               49, 24
               

               Conread position:
               39-326
               

               Cow position:
               chr5:65760565-65760278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               211
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               8, 49
               

               Conread position:
               40-197
               

               Cow position:
               chr5:60188960-60189120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               67, 32
               

               Conread position:
               40-298
               

               Cow position:
               chr5:52108296-52108032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               200
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               99, 23
               

               Conread position:
               40-326
               

               Cow position:
               chr5:65883657-65883370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               100, 266
               

               Conread position:
               41-222
               

               Cow position:
               chr5:57489973-57489799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               96, 23
               

               Conread position:
               42-220
               

               Cow position:
               chr5:56287529-56287352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               44-232
               

               Cow position:
               chr5:57230365-57230175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               154
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               44-233
               

               Cow position:
               chr5:61875517-61875700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               97, 21
               

               Conread position:
               44-243
               

               Cow position:
               chr5:56011102-56011302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               95, 14
               

               Conread position:
               44-286
               

               Cow position:
               chr5:35123541-35123307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               72, 29
               

               Conread position:
               44-294
               

               Cow position:
               chr5:5257323-5257065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               195
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               14, 185
               

               Conread position:
               44-298
               

               Cow position:
               chr5:23208930-23209185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               44-298
               

               Cow position:
               chr5:46672180-46672440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               198
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               95, 19
               

               Conread position:
               44-314
               

               Cow position:
               chr5:57101551-57101286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 83
               

               Conread position:
               44-317
               

               Cow position:
               chr5:2309582-2309313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 21
               

               Conread position:
               45-298
               

               Cow position:
               chr5:58437220-58437473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               71, 17
               

               Conread position:
               46-232
               

               Cow position:
               chr5:60908640-60908826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               21, 66
               

               Conread position:
               46-292
               

               Cow position:
               chr5:49342074-49341815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               47-189
               

               Cow position:
               chr5:62415986-62415842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               47-281
               

               Cow position:
               chr5:58555112-58555365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               197
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               47-298
               

               Cow position:
               chr5:34347751-34347507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               93, 29
               

               Conread position:
               47-305
               

               Cow position:
               chr5:45187142-45186882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               18, 125
               

               Conread position:
               48-262
               

               Cow position:
               chr5:7770878-7771100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               18, 89
               

               Conread position:
               48-316
               

               Cow position:
               chr5:57371775-57372048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               7, 18
               

               Conread position:
               49-211
               

               Cow position:
               chr5:28230143-28230305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               49-281
               

               Cow position:
               chr5:25597816-25598038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               91, 18
               

               Conread position:
               50-321
               

               Cow position:
               chr5:15364246-15364518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 98
               

               Conread position:
               51-201
               

               Cow position:
               chr5:43844684-43844532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               51-275
               

               Cow position:
               chr5:37713675-37713449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               51-298
               

               Cow position:
               chr5:51298731-51298489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 17
               

               Conread position:
               52-202
               

               Cow position:
               chr5:23527648-23527498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               88, 11
               

               Conread position:
               52-225
               

               Cow position:
               chr5:57150644-57150822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               52-324
               

               Cow position:
               chr5:5760333-5760057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 115
               

               Conread position:
               52-335
               

               Cow position:
               chr5:37266059-37265774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               85, 13
               

               Conread position:
               53-295
               

               Cow position:
               chr5:14920946-14920703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               89, 15
               

               Conread position:
               53-298
               

               Cow position:
               chr5:17104833-17105071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               6, 86
               

               Conread position:
               53-314
               

               Cow position:
               chr5:16938039-16937791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 15
               

               Conread position:
               54-218
               

               Cow position:
               chr5:68264975-68264810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               54-225
               

               Cow position:
               chr5:40356866-40356703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               13, 106
               

               Conread position:
               54-329
               

               Cow position:
               chr5:67679162-67679438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               195
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               55-217
               

               Cow position:
               chr5:1739576-1739737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               84, 26
               

               Conread position:
               55-231
               

               Cow position:
               chr5:17724234-17724056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               19, 8
               

               Conread position:
               55-286
               

               Cow position:
               chr5:30266903-30266671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               55-287
               

               Cow position:
               chr5:22091786-22091545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               32, 26
               

               Conread position:
               55-298
               

               Cow position:
               chr5:56222561-56222310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               16, 104
               

               Conread position:
               55-314
               

               Cow position:
               chr5:873024-873285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               85, 183
               

               Conread position:
               55-323
               

               Cow position:
               chr5:35229153-35228895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 10
               

               Conread position:
               55-323
               

               Cow position:
               chr5:36868721-36868989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 112
               

               Conread position:
               56-295
               

               Cow position:
               chr5:12761133-12760897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 122
               

               Conread position:
               57-315
               

               Cow position:
               chr5:23678947-23679206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               66, 53
               

               Conread position:
               58-202
               

               Cow position:
               chr5:20595451-20595597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               11, 115
               

               Conread position:
               58-305
               

               Cow position:
               chr5:35319575-35319327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               58-315
               

               Cow position:
               chr5:59372460-59372717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               205, 79
               

               Conread position:
               59-298
               

               Cow position:
               chr5:59627086-59627318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               15, 159
               

               Conread position:
               59-311
               

               Cow position:
               chr5:17566450-17566204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               80, 52
               

               Conread position:
               59-321
               

               Cow position:
               chr5:52852959-52853216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 157
               

               Conread position:
               60-212
               

               Cow position:
               chr5:63656464-63656621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               13, 41
               
UCSC Genome Browser
               Conread position:
               60-285
               

               Cow position:
               chr5:50600036-50600259 (view  custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               12, 25
               
UCSC Genome Browser
               
               
               
Conread position: 60-294

               
               
               
Cow position: chr5:43846385-43846156 (view  custom track)

               
               
               
Alignm length: 241

               
               
               
Alignm identity: 178

               
               
               
Alignm E-value: 2e-33

               
               
               
Alignm gaps (pig, cow): 90, 55
UCSC Genome Browser
               
               
               
Conread position: 61-193

               
               
               
Cow position: chr5:41129732-41129865 (view  custom track)

               
               
               
Alignm length: 134

               
               
               
Alignm identity: 101

               
               
               
Alignm E-value: 5e-22

               
               
               
Alignm gaps (pig, cow): 78, 0

               
               
               Conread position:61-200
               
               
               Cow position:chr5:19251568-19251710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:62-228
               
               
               Cow position:chr5:24946231-24946398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 140

               
               
               Conread position:62-298
               
               
               Cow position:chr5:65343613-65343855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:62-315
               
               
               Cow position:chr5:59631464-59631731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:62-322
               
               
               Cow position:chr5:4226338-4226605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:62-322
               
               
               Cow position:chr5:40889306-40889044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:62-323
               
               
               Cow position:chr5:4120015-4120274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):25, 241

               
               
               Conread position:62-329
               
               
               Cow position:chr5:26370674-26370942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:63-219
               
               
               Cow position:chr5:9233997-9233839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:63-232
               
               
               Cow position:chr5:27293892-27293725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):77, 153

               
               
               Conread position:63-293
               
               
               Cow position:chr5:56860439-56860664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):168, 78

               
               
               Conread position:63-298
               
               
               Cow position:chr5:55783959-55783735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):7, 68

               
               
               Conread position:63-317
               
               
               Cow position:chr5:4322396-4322660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 150

               
               
               Conread position:63-320
               
               
               Cow position:chr5:6520003-6520253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:63-335
               
               
               Cow position:chr5:57279376-57279648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):77, 215

               
               
               Conread position:64-237
               
               
               Cow position:chr5:33661839-33662013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:64-295
               
               
               Cow position:chr5:55259402-55259631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 134

               
               
               Conread position:64-298
               
               
               Cow position:chr5:31096810-31096576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:64-298
               
               
               Cow position:chr5:33918712-33918477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:64-319
               
               
               Cow position:chr5:31469600-31469343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:64-321
               
               
               Cow position:chr5:69333492-69333750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 251

               
               
               Conread position:64-323
               
               
               Cow position:chr5:29468289-29468028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):10, 157

               
               
               Conread position:64-325
               
               
               Cow position:chr5:28330351-28330087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:64-326
               
               
               Cow position:chr5:5751618-5751350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 256

               
               
               Conread position:64-327
               
               
               Cow position:chr5:17835165-17834902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 104

               
               
               Conread position:64-332
               
               
               Cow position:chr5:18702227-18701966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:65-193
               
               
               Cow position:chr5:67540208-67540077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:65-208
               
               
               Cow position:chr5:50526256-50526400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:65-214
               
               
               Cow position:chr5:12556313-12556462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 93

               
               
               Conread position:65-287
               
               
               Cow position:chr5:69033226-69033008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:65-294
               
               
               Cow position:chr5:60523726-60523949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 75

               
               
               Conread position:65-298
               
               
               Cow position:chr5:29829901-29829661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:65-314
               
               
               Cow position:chr5:58737764-58737513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:66-225
               
               
               Cow position:chr5:43457537-43457376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:66-295
               
               
               Cow position:chr5:53935552-53935331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:66-295
               
               
               Cow position:chr5:73253406-73253628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:66-305
               
               
               Cow position:chr5:46681729-46681490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):5, 126

               
               
               Conread position:66-317
               
               
               Cow position:chr5:2827369-2827620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 204

               
               
               Conread position:67-186
               
               
               Cow position:chr5:57736698-57736583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:67-282
               
               
               Cow position:chr5:44054056-44053836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:68-201
               
               
               Cow position:chr5:15426536-15426669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:68-222
               
               
               Cow position:chr5:56334511-56334360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:68-223
               
               
               Cow position:chr5:33155812-33155968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:68-225
               
               
               Cow position:chr5:24069387-24069540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:68-228
               
               
               Cow position:chr5:9369273-9369113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):71, 9

               
               
               Conread position:68-232
               
               
               Cow position:chr5:51490248-51490085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:68-232
               
               
               Cow position:chr5:55129340-55129505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:68-240
               
               
               Cow position:chr5:34884825-34884646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:68-247
               
               
               Cow position:chr5:57787799-57787983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 133

               
               
               Conread position:68-251
               
               
               Cow position:chr5:61492090-61492277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:68-252
               
               
               Cow position:chr5:64139557-64139738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):73, 144

               
               
               Conread position:68-258
               
               
               Cow position:chr5:50871809-50872007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:68-275
               
               
               Cow position:chr5:64027022-64026812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:68-281
               
               
               Cow position:chr5:16939597-16939383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:68-281
               
               
               Cow position:chr5:35513212-35513430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 164

               
               
               Conread position:68-284
               
               
               Cow position:chr5:45706032-45706248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 41

               
               
               Conread position:68-290
               
               
               Cow position:chr5:30561929-30562146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 150

               
               
               Conread position:68-293
               
               
               Cow position:chr5:25020770-25020535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:68-295
               
               
               Cow position:chr5:22608640-22608862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:68-295
               
               
               Cow position:chr5:30276687-30276910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):71, 146

               
               
               Conread position:68-298
               
               
               Cow position:chr5:44028757-44028526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):69, 144

               
               
               Conread position:68-298
               
               
               Cow position:chr5:51555084-51554859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 64

               
               
               Conread position:68-298
               
               
               Cow position:chr5:56028542-56028319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):73, 47

               
               
               Conread position:68-298
               
               
               Cow position:chr5:61414343-61414574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:68-298
               
               
               Cow position:chr5:71015893-71015659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):8, 174

               
               
               Conread position:68-309
               
               
               Cow position:chr5:69383252-69383489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:68-311
               
               
               Cow position:chr5:15115900-15116146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 193

               
               
               Conread position:68-311
               
               
               Cow position:chr5:21525157-21525400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:68-314
               
               
               Cow position:chr5:57062532-57062286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 139

               
               
               Conread position:68-314
               
               
               Cow position:chr5:59384690-59384446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:68-323
               
               
               Cow position:chr5:45405034-45405295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):7, 238

               
               
               Conread position:68-328
               
               
               Cow position:chr5:58519419-58519161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 203

               
               
               Conread position:68-329
               
               
               Cow position:chr5:38853345-38853608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):19, 248

               
               
               Conread position:68-329
               
               
               Cow position:chr5:65679973-65679718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):195, 66

               
               
               Conread position:68-330
               
               
               Cow position:chr5:58215953-58216215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:68-331
               
               
               Cow position:chr5:50824589-50824843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 144

               
               
               Conread position:68-331
               
               
               Cow position:chr5:55965897-55965629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:68-331
               
               
               Cow position:chr5:60515031-60514772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:68-332
               
               
               Cow position:chr5:26133100-26132833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:68-333
               
               
               Cow position:chr5:46541058-46540797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:68-334
               
               
               Cow position:chr5:61600405-61600668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):72, 81

               
               
               Conread position:68-352
               
               
               Cow position:chr5:18513709-18513424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):72, 58

               
               
               Conread position:68-353
               
               
               Cow position:chr5:5201898-5202183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):72, 266

               
               
               Conread position:69-208
               
               
               Cow position:chr5:72006865-72006727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:69-214
               
               
               Cow position:chr5:45126649-45126796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:69-221
               
               
               Cow position:chr5:9170583-9170433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:69-230
               
               
               Cow position:chr5:56467689-56467850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:69-232
               
               
               Cow position:chr5:56428313-56428154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:69-237
               
               
               Cow position:chr5:6033434-6033603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:69-272
               
               
               Cow position:chr5:17384152-17383954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:69-286
               
               
               Cow position:chr5:35397503-35397718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:69-290
               
               
               Cow position:chr5:38717308-38717513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 57

               
               
               Conread position:69-292
               
               
               Cow position:chr5:29144192-29143964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 67

               
               
               Conread position:69-298
               
               
               Cow position:chr5:2469209-2468987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:69-298
               
               
               Cow position:chr5:6439023-6438800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:69-298
               
               
               Cow position:chr5:67634519-67634282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:69-305
               
               
               Cow position:chr5:5089722-5089491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):70, 89

               
               
               Conread position:69-315
               
               
               Cow position:chr5:6839086-6838837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 187

               
               
               Conread position:69-315
               
               
               Cow position:chr5:61999559-61999312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:69-316
               
               
               Cow position:chr5:40170427-40170173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:69-319
               
               
               Cow position:chr5:48867756-48867500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 154

               
               
               Conread position:69-322
               
               
               Cow position:chr5:6126837-6127082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:69-323
               
               
               Cow position:chr5:2423288-2423035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:69-326
               
               
               Cow position:chr5:54750813-54751065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:69-328
               
               
               Cow position:chr5:39035778-39036038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:69-334
               
               
               Cow position:chr5:48867466-48867206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 137

               
               
               Conread position:69-335
               
               
               Cow position:chr5:35989755-35990025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:69-357
               
               
               Cow position:chr5:34915055-34914765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):72, 158

               
               
               Conread position:70-193
               
               
               Cow position:chr5:55350913-55350786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:70-251
               
               
               Cow position:chr5:11289394-11289209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:70-286
               
               
               Cow position:chr5:65552709-65552507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:70-286
               
               
               Cow position:chr5:69751388-69751171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:70-296
               
               
               Cow position:chr5:18062320-18062086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:70-306
               
               
               Cow position:chr5:46023065-46022824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:70-311
               
               
               Cow position:chr5:61914562-61914810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:70-315
               
               
               Cow position:chr5:67672222-67672474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:70-322
               
               
               Cow position:chr5:56613565-56613314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 162

               
               
               Conread position:71-169
               
               
               Cow position:chr5:14742214-14742313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:71-232
               
               
               Cow position:chr5:4166642-4166802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:71-245
               
               
               Cow position:chr5:44874193-44874365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):68, 110

               
               
               Conread position:71-282
               
               
               Cow position:chr5:46080143-46079929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:71-287
               
               
               Cow position:chr5:52137935-52138153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:71-293
               
               
               Cow position:chr5:72045674-72045456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:71-294
               
               
               Cow position:chr5:4267670-4267882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 138

               
               
               Conread position:71-294
               
               
               Cow position:chr5:44163369-44163151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:71-295
               
               
               Cow position:chr5:64176126-64175907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):73, 152

               
               
               Conread position:71-306
               
               
               Cow position:chr5:46129669-46129433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 93

               
               
               Conread position:71-321
               
               
               Cow position:chr5:61049332-61049581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 230

               
               
               Conread position:72-225
               
               
               Cow position:chr5:4710150-4709997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):69, 60

               
               
               Conread position:72-286
               
               
               Cow position:chr5:52723578-52723789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:72-295
               
               
               Cow position:chr5:44810238-44810014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:72-297
               
               
               Cow position:chr5:48918811-48919023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:72-311
               
               
               Cow position:chr5:7646716-7646956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):69, 200

               
               
               Conread position:72-321
               
               
               Cow position:chr5:7409953-7410194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:72-321
               
               
               Cow position:chr5:60422969-60422719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 193

               
               
               Conread position:72-328
               
               
               Cow position:chr5:1104878-1104617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:73-284
               
               
               Cow position:chr5:36142989-36143190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):68, 49

               
               
               Conread position:73-292
               
               
               Cow position:chr5:60175481-60175706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:73-305
               
               
               Cow position:chr5:22565621-22565852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 169

               
               
               Conread position:73-305
               
               
               Cow position:chr5:36624250-36624484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:73-314
               
               
               Cow position:chr5:55072086-55071841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 137

               
               
               Conread position:73-314
               
               
               Cow position:chr5:56072159-56071905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 245

               
               
               Conread position:73-318
               
               
               Cow position:chr5:52040321-52040070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:73-324
               
               
               Cow position:chr5:12299913-12300158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 130

               
               
               Conread position:73-326
               
               
               Cow position:chr5:50943153-50942903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:73-329
               
               
               Cow position:chr5:11562721-11562467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 142

               
               
               Conread position:73-345
               
               
               Cow position:chr5:12873753-12874025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):67, 131

               
               
               Conread position:73-360
               
               
               Cow position:chr5:28814945-28814662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 46

               
               
               Conread position:74-232
               
               
               Cow position:chr5:44726331-44726173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):70, 137

               
               
               Conread position:74-282
               
               
               Cow position:chr5:52778556-52778354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:74-286
               
               
               Cow position:chr5:39146980-39146767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:74-286
               
               
               Cow position:chr5:51920291-51920504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:74-298
               
               
               Cow position:chr5:991467-991700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 169

               
               
               Conread position:74-317
               
               
               Cow position:chr5:5016432-5016668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):66, 53

               
               
               Conread position:74-331
               
               
               Cow position:chr5:64798876-64798622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):8, 148

               
               
               Conread position:75-232
               
               
               Cow position:chr5:28017126-28017288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:75-268
               
               
               Cow position:chr5:38168898-38169089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 146

               
               
               Conread position:75-285
               
               
               Cow position:chr5:3743326-3743539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:75-311
               
               
               Cow position:chr5:71158277-71158041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 144

               
               
               Conread position:75-321
               
               
               Cow position:chr5:64060450-64060693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):69, 138

               
               
               Conread position:76-213
               
               
               Cow position:chr5:1396605-1396742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 120

               
               
               Conread position:76-332
               
               
               Cow position:chr5:27099365-27099607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):121, 58

               
               
               Conread position:77-317
               
               
               Cow position:chr5:52137048-52136806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:78-213
               
               
               Cow position:chr5:26723455-26723590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:78-228
               
               
               Cow position:chr5:56361803-56361949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:78-300
               
               
               Cow position:chr5:60948140-60948361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 59

               
               
               Conread position:78-317
               
               
               Cow position:chr5:60908355-60908596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:78-324
               
               
               Cow position:chr5:17828472-17828230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):62, 223

               
               
               Conread position:79-213
               
               
               Cow position:chr5:20211970-20212103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):61, 49

               
               
               Conread position:79-242
               
               
               Cow position:chr5:25730488-25730659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:79-323
               
               
               Cow position:chr5:26497669-26497439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:79-325
               
               
               Cow position:chr5:56549372-56549619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):28, 227

               
               
               Conread position:80-222
               
               
               Cow position:chr5:65050202-65050059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:80-294
               
               
               Cow position:chr5:44722504-44722291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:80-298
               
               
               Cow position:chr5:44196920-44196704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):60, 127

               
               
               Conread position:80-306
               
               
               Cow position:chr5:25035245-25035020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):144, 23

               
               
               Conread position:80-349
               
               
               Cow position:chr5:742740-743008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:80-357
               
               
               Cow position:chr5:2240980-2240710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:81-267
               
               
               Cow position:chr5:51247121-51246937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:81-298
               
               
               Cow position:chr5:55166729-55166946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 87

               
               
               Conread position:81-315
               
               
               Cow position:chr5:70505549-70505793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:84-232
               
               
               Cow position:chr5:12738542-12738394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):130, 48

               
               
               Conread position:84-232
               
               
               Cow position:chr5:35647356-35647505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:84-284
               
               
               Cow position:chr5:4506952-4506751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:84-287
               
               
               Cow position:chr5:55942366-55942162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:84-295
               
               
               Cow position:chr5:65080449-65080660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):128, 48

               
               
               Conread position:84-310
               
               
               Cow position:chr5:64116117-64116341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:84-316
               
               
               Cow position:chr5:24615334-24615101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:84-316
               
               
               Cow position:chr5:28681504-28681271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:84-323
               
               
               Cow position:chr5:33482734-33482963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:84-349
               
               
               Cow position:chr5:60212597-60212864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):38, 258

               
               
               Conread position:85-298
               
               
               Cow position:chr5:3492194-3492411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:85-298
               
               
               Cow position:chr5:3582574-3582781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 115

               
               
               Conread position:85-332
               
               
               Cow position:chr5:51539137-51539384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 206

               
               
               Conread position:86-287
               
               
               Cow position:chr5:47743643-47743836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:86-298
               
               
               Cow position:chr5:6544121-6543908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:86-314
               
               
               Cow position:chr5:26147606-26147827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):53, 126

               
               
               Conread position:86-315
               
               
               Cow position:chr5:7177166-7177395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 138

               
               
               Conread position:87-248
               
               
               Cow position:chr5:5847829-5847662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:87-316
               
               
               Cow position:chr5:26167437-26167666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):54, 128

               
               
               Conread position:88-222
               
               
               Cow position:chr5:49260019-49259887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:88-323
               
               
               Cow position:chr5:42321223-42320996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):210, 46

               
               
               Conread position:88-324
               
               
               Cow position:chr5:19811549-19811768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:89-295
               
               
               Cow position:chr5:66659527-66659737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:89-312
               
               
               Cow position:chr5:54312619-54312841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:89-320
               
               
               Cow position:chr5:49407375-49407146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 110

               
               
               Conread position:89-331
               
               
               Cow position:chr5:13957042-13957286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 227

               
               
               Conread position:90-223
               
               
               Cow position:chr5:54436775-54436906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:90-286
               
               
               Cow position:chr5:72167482-72167284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:90-294
               
               
               Cow position:chr5:74039984-74039784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:90-298
               
               
               Cow position:chr5:57825155-57825364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:90-307
               
               
               Cow position:chr5:57687567-57687346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 217

               
               
               Conread position:91-287
               
               
               Cow position:chr5:6695565-6695764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:92-284
               
               
               Cow position:chr5:38040543-38040356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:92-285
               
               
               Cow position:chr5:51233998-51233811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:92-298
               
               
               Cow position:chr5:18295460-18295663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 169

               
               
               Conread position:92-309
               
               
               Cow position:chr5:46063518-46063730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 154

               
               
               Conread position:92-317
               
               
               Cow position:chr5:56494282-56494049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:92-336
               
               
               Cow position:chr5:17826205-17826452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:93-223
               
               
               Cow position:chr5:38382777-38382647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 106

               
               
               Conread position:93-298
               
               
               Cow position:chr5:35190132-35190332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 123

               
               
               Conread position:93-305
               
               
               Cow position:chr5:14167863-14168078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:93-321
               
               
               Cow position:chr5:67463005-67463234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:93-325
               
               
               Cow position:chr5:56871893-56871664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:94-273
               
               
               Cow position:chr5:42288682-42288862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-293
               
               
               Cow position:chr5:69766004-69765813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:94-295
               
               
               Cow position:chr5:37842256-37842056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:94-310
               
               
               Cow position:chr5:57497404-57497188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 125

               
               
               Conread position:94-321
               
               
               Cow position:chr5:51289568-51289357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr5:50579142-50578942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 119

               
               
               Conread position:95-315
               
               
               Cow position:chr5:5808121-5808340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:95-327
               
               
               Cow position:chr5:13270993-13270761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:95-329
               
               
               Cow position:chr5:24464768-24464995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:95-334
               
               
               Cow position:chr5:52207567-52207804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 203

               
               
               Conread position:96-228
               
               
               Cow position:chr5:51490577-51490444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:96-232
               
               
               Cow position:chr5:42623154-42623020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:96-298
               
               
               Cow position:chr5:9487055-9486857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:96-313
               
               
               Cow position:chr5:8736254-8736037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 51

               
               
               Conread position:97-209
               
               
               Cow position:chr5:35725872-35725759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:97-232
               
               
               Cow position:chr5:45037276-45037411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:97-294
               
               
               Cow position:chr5:3677749-3677950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 40

               
               
               Conread position:97-298
               
               
               Cow position:chr5:16185404-16185606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:97-308
               
               
               Cow position:chr5:7898355-7898152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:97-311
               
               
               Cow position:chr5:33696369-33696586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:97-319
               
               
               Cow position:chr5:36822913-36823114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:97-320
               
               
               Cow position:chr5:54340798-54341011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:97-325
               
               
               Cow position:chr5:71579489-71579710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:97-331
               
               
               Cow position:chr5:36747056-36746822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:97-334
               
               
               Cow position:chr5:20882598-20882360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:98-269
               
               
               Cow position:chr5:22422592-22422420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:98-284
               
               
               Cow position:chr5:8159415-8159227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:98-284
               
               
               Cow position:chr5:20812573-20812761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:98-284
               
               
               Cow position:chr5:30035094-30035281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:98-293
               
               
               Cow position:chr5:44734698-44734506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):37, 129

               
               
               Conread position:98-295
               
               
               Cow position:chr5:61580309-61580503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:98-298
               
               
               Cow position:chr5:20387168-20387381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:98-298
               
               
               Cow position:chr5:63173016-63172822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:98-305
               
               
               Cow position:chr5:22102585-22102786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 118

               
               
               Conread position:98-319
               
               
               Cow position:chr5:38820633-38820412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-320
               
               
               Cow position:chr5:1005841-1005616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:98-323
               
               
               Cow position:chr5:14293618-14293390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:99-213
               
               
               Cow position:chr5:30638551-30638435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:99-251
               
               
               Cow position:chr5:694892-695043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 40

               
               
               Conread position:99-282
               
               
               Cow position:chr5:54330909-54331097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:99-286
               
               
               Cow position:chr5:54753224-54753035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:99-296
               
               
               Cow position:chr5:16668725-16668917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:99-317
               
               
               Cow position:chr5:49821456-49821677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:99-321
               
               
               Cow position:chr5:47220516-47220740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):39, 208

               
               
               Conread position:99-324
               
               
               Cow position:chr5:57744896-57744662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:99-325
               
               
               Cow position:chr5:34288222-34288001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):105, 38

               
               
               Conread position:99-328
               
               
               Cow position:chr5:37679200-37679429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:99-330
               
               
               Cow position:chr5:19561420-19561186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:99-331
               
               
               Cow position:chr5:57399224-57398995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:99-331
               
               
               Cow position:chr5:62341056-62341291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 169

               
               
               Conread position:100-258
               
               
               Cow position:chr5:21003345-21003494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:100-286
               
               
               Cow position:chr5:50087800-50087982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):97, 8

               
               
               Conread position:100-294
               
               
               Cow position:chr5:29256678-29256486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:100-298
               
               
               Cow position:chr5:19079281-19079469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:100-298
               
               
               Cow position:chr5:24915498-24915299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:100-316
               
               
               Cow position:chr5:54127318-54127530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:100-317
               
               
               Cow position:chr5:46421613-46421845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:100-325
               
               
               Cow position:chr5:44798833-44799064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:100-330
               
               
               Cow position:chr5:58446155-58445922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:100-336
               
               
               Cow position:chr5:58756377-58756142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):40, 211

               
               
               Conread position:101-275
               
               
               Cow position:chr5:51125979-51125815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 110

               
               
               Conread position:101-324
               
               
               Cow position:chr5:64843941-64843715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):38, 201

               
               
               Conread position:102-213
               
               
               Cow position:chr5:54099821-54099933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:102-230
               
               
               Cow position:chr5:70353953-70353825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 115

               
               
               Conread position:102-282
               
               
               Cow position:chr5:69427422-69427251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:102-285
               
               
               Cow position:chr5:53795056-53795234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 115

               
               
               Conread position:102-286
               
               
               Cow position:chr5:53980723-53980538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:102-287
               
               
               Cow position:chr5:4347673-4347478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:102-300
               
               
               Cow position:chr5:15991608-15991417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:102-317
               
               
               Cow position:chr5:43839969-43839752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 146

               
               
               Conread position:102-324
               
               
               Cow position:chr5:62011714-62011932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:102-329
               
               
               Cow position:chr5:4864574-4864792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:103-245
               
               
               Cow position:chr5:4956580-4956437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:103-284
               
               
               Cow position:chr5:63646790-63646609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:103-298
               
               
               Cow position:chr5:26894687-26894487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:103-311
               
               
               Cow position:chr5:73424649-73424437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:103-317
               
               
               Cow position:chr5:40122578-40122364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):37, 202

               
               
               Conread position:103-317
               
               
               Cow position:chr5:48154433-48154217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:103-320
               
               
               Cow position:chr5:9024281-9024057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:103-329
               
               
               Cow position:chr5:20126935-20127164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:103-568
               
               
               Cow position:chr5:62572564-62573027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:104-298
               
               
               Cow position:chr5:38647673-38647882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:104-311
               
               
               Cow position:chr5:37933747-37933954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:104-320
               
               
               Cow position:chr5:36370312-36370522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:105-298
               
               
               Cow position:chr5:25495324-25495125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:105-298
               
               
               Cow position:chr5:47279599-47279802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:105-305
               
               
               Cow position:chr5:62995991-62996192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:105-328
               
               
               Cow position:chr5:44901543-44901774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 213

               
               
               Conread position:106-213
               
               
               Cow position:chr5:18091039-18091147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-294
               
               
               Cow position:chr5:70189107-70189300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:106-294
               
               
               Cow position:chr5:71445425-71445614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-298
               
               
               Cow position:chr5:7676120-7675932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:106-298
               
               
               Cow position:chr5:12562725-12562534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:106-301
               
               
               Cow position:chr5:64024431-64024634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:106-316
               
               
               Cow position:chr5:23140554-23140343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 147

               
               
               Conread position:106-322
               
               
               Cow position:chr5:41755950-41755739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):197, 23

               
               
               Conread position:107-323
               
               
               Cow position:chr5:64492310-64492522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 194

               
               
               Conread position:108-258
               
               
               Cow position:chr5:46749788-46749639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:108-295
               
               
               Cow position:chr5:48128361-48128176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:108-298
               
               
               Cow position:chr5:27084334-27084525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:108-316
               
               
               Cow position:chr5:1694051-1693848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 108

               
               
               Conread position:109-315
               
               
               Cow position:chr5:46755166-46755369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:110-295
               
               
               Cow position:chr5:6876929-6876742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:110-323
               
               
               Cow position:chr5:60117467-60117678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:110-328
               
               
               Cow position:chr5:28881653-28881429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):30, 199

               
               
               Conread position:111-215
               
               
               Cow position:chr5:49566058-49566162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 51

               
               
               Conread position:111-298
               
               
               Cow position:chr5:36205730-36205916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:111-311
               
               
               Cow position:chr5:41736222-41736420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 155

               
               
               Conread position:111-315
               
               
               Cow position:chr5:46710622-46710824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:111-315
               
               
               Cow position:chr5:46715522-46715724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:111-320
               
               
               Cow position:chr5:63068683-63068474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 194

               
               
               Conread position:111-321
               
               
               Cow position:chr5:2355560-2355765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:111-322
               
               
               Cow position:chr5:37090599-37090389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:111-324
               
               
               Cow position:chr5:48062077-48061856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:111-327
               
               
               Cow position:chr5:56433921-56434139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:112-210
               
               
               Cow position:chr5:38418558-38418656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:112-271
               
               
               Cow position:chr5:1027428-1027275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:112-286
               
               
               Cow position:chr5:64008818-64008643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:112-298
               
               
               Cow position:chr5:29054569-29054755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:112-298
               
               
               Cow position:chr5:30221737-30221551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:112-316
               
               
               Cow position:chr5:19298638-19298428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 157

               
               
               Conread position:112-316
               
               
               Cow position:chr5:30796932-30796727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:112-323
               
               
               Cow position:chr5:44396140-44396350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 173

               
               
               Conread position:112-327
               
               
               Cow position:chr5:33513685-33513481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:112-327
               
               
               Cow position:chr5:57802893-57803116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:112-341
               
               
               Cow position:chr5:19972963-19972732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:112-384
               
               
               Cow position:chr5:44189154-44189432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 260

               
               
               Conread position:113-226
               
               
               Cow position:chr5:36251154-36251268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-286
               
               
               Cow position:chr5:65745724-65745554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:113-299
               
               
               Cow position:chr5:30492751-30492564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:113-322
               
               
               Cow position:chr5:57447621-57447417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:113-330
               
               
               Cow position:chr5:56535578-56535796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:113-333
               
               
               Cow position:chr5:43815776-43815559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:115-214
               
               
               Cow position:chr5:17644584-17644484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:115-232
               
               
               Cow position:chr5:54067998-54067877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:115-235
               
               
               Cow position:chr5:29979914-29979793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:115-252
               
               
               Cow position:chr5:60126734-60126876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:115-255
               
               
               Cow position:chr5:41522634-41522501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:115-266
               
               
               Cow position:chr5:56327677-56327529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:115-292
               
               
               Cow position:chr5:7139789-7139621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:115-294
               
               
               Cow position:chr5:36634751-36634930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:115-295
               
               
               Cow position:chr5:31648464-31648638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:115-298
               
               
               Cow position:chr5:6086299-6086115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:115-298
               
               
               Cow position:chr5:59335814-59335999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:115-298
               
               
               Cow position:chr5:70270911-70271093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:115-299
               
               
               Cow position:chr5:60761701-60761515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:115-305
               
               
               Cow position:chr5:5010053-5009875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:115-312
               
               
               Cow position:chr5:56477249-56477444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 113

               
               
               Conread position:115-313
               
               
               Cow position:chr5:74887856-74887658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:115-317
               
               
               Cow position:chr5:3817643-3817443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:115-318
               
               
               Cow position:chr5:37919441-37919244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:115-323
               
               
               Cow position:chr5:53779197-53779403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 102

               
               
               Conread position:115-325
               
               
               Cow position:chr5:5666778-5666568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 153

               
               
               Conread position:115-331
               
               
               Cow position:chr5:35394389-35394180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 100

               
               
               Conread position:115-349
               
               
               Cow position:chr5:51012043-51012275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:116-293
               
               
               Cow position:chr5:50762277-50762463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:116-294
               
               
               Cow position:chr5:51800566-51800387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:116-295
               
               
               Cow position:chr5:19294481-19294296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:116-322
               
               
               Cow position:chr5:1766254-1766048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:116-328
               
               
               Cow position:chr5:8146320-8146102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:117-252
               
               
               Cow position:chr5:30497543-30497677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:117-298
               
               
               Cow position:chr5:22186464-22186632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:117-298
               
               
               Cow position:chr5:57087017-57086836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:117-298
               
               
               Cow position:chr5:69538586-69538768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:117-305
               
               
               Cow position:chr5:38770568-38770380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:117-312
               
               
               Cow position:chr5:31527349-31527153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 153

               
               
               Conread position:117-314
               
               
               Cow position:chr5:56525666-56525470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 181

               
               
               Conread position:117-315
               
               
               Cow position:chr5:19972761-19972565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:117-320
               
               
               Cow position:chr5:41226960-41226757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 187

               
               
               Conread position:117-324
               
               
               Cow position:chr5:54404808-54404611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:117-325
               
               
               Cow position:chr5:17371652-17371442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:117-326
               
               
               Cow position:chr5:45854537-45854756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:117-331
               
               
               Cow position:chr5:46499606-46499818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):24, 191

               
               
               Conread position:118-323
               
               
               Cow position:chr5:20345584-20345788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:118-325
               
               
               Cow position:chr5:23528467-23528257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:118-325
               
               
               Cow position:chr5:38683550-38683757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 174

               
               
               Conread position:119-242
               
               
               Cow position:chr5:72845778-72845658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:119-264
               
               
               Cow position:chr5:23855621-23855481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:119-284
               
               
               Cow position:chr5:69682301-69682135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:119-298
               
               
               Cow position:chr5:14454089-14454270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:119-298
               
               
               Cow position:chr5:61201807-61201987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:119-311
               
               
               Cow position:chr5:40413221-40413020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 195

               
               
               Conread position:119-314
               
               
               Cow position:chr5:12724344-12724150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:119-319
               
               
               Cow position:chr5:55162674-55162876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:119-320
               
               
               Cow position:chr5:55041257-55041461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:119-335
               
               
               Cow position:chr5:57556077-57556296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):21, 150

               
               
               Conread position:120-213
               
               
               Cow position:chr5:4336341-4336435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:120-286
               
               
               Cow position:chr5:56734337-56734495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:120-292
               
               
               Cow position:chr5:34787623-34787792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:120-296
               
               
               Cow position:chr5:42674220-42674385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:120-298
               
               
               Cow position:chr5:17987846-17987667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:120-311
               
               
               Cow position:chr5:1678637-1678829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 84

               
               
               Conread position:120-325
               
               
               Cow position:chr5:61043235-61043442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:120-328
               
               
               Cow position:chr5:50421928-50421716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:120-329
               
               
               Cow position:chr5:44312366-44312156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:120-331
               
               
               Cow position:chr5:70346350-70346558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 154

               
               
               Conread position:121-320
               
               
               Cow position:chr5:19052742-19052542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:121-322
               
               
               Cow position:chr5:68461623-68461423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:122-316
               
               
               Cow position:chr5:52029458-52029649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:122-320
               
               
               Cow position:chr5:60207759-60207950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:123-314
               
               
               Cow position:chr5:34918398-34918585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:123-315
               
               
               Cow position:chr5:37253481-37253664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:123-320
               
               
               Cow position:chr5:67950734-67950539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:123-349
               
               
               Cow position:chr5:58401621-58401846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:124-297
               
               
               Cow position:chr5:58454524-58454692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:125-294
               
               
               Cow position:chr5:41530886-41530714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:125-298
               
               
               Cow position:chr5:63940007-63939832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:126-287
               
               
               Cow position:chr5:29599491-29599337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):15, 90

               
               
               Conread position:126-294
               
               
               Cow position:chr5:29895226-29895393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 88

               
               
               Conread position:126-295
               
               
               Cow position:chr5:60100525-60100685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:126-298
               
               
               Cow position:chr5:49207272-49207103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:126-316
               
               
               Cow position:chr5:60153830-60154012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:127-250
               
               
               Cow position:chr5:9352566-9352688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:127-315
               
               
               Cow position:chr5:21339213-21339018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 184

               
               
               Conread position:127-331
               
               
               Cow position:chr5:21721414-21721220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:128-305
               
               
               Cow position:chr5:56284360-56284540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:128-327
               
               
               Cow position:chr5:17683386-17683188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:128-329
               
               
               Cow position:chr5:57231693-57231887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:129-232
               
               
               Cow position:chr5:54154144-54154043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:129-292
               
               
               Cow position:chr5:38079428-38079594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:129-294
               
               
               Cow position:chr5:40292880-40292718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:129-304
               
               
               Cow position:chr5:63763723-63763897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:129-320
               
               
               Cow position:chr5:29010314-29010495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:129-330
               
               
               Cow position:chr5:56563813-56564006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:130-323
               
               
               Cow position:chr5:67339942-67340131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:130-335
               
               
               Cow position:chr5:58232198-58232401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 75

               
               
               Conread position:131-287
               
               
               Cow position:chr5:31317058-31317216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:131-298
               
               
               Cow position:chr5:74980367-74980537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:132-292
               
               
               Cow position:chr5:59662997-59662837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):7, 80

               
               
               Conread position:132-298
               
               
               Cow position:chr5:55749976-55749810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):7, 50

               
               
               Conread position:132-314
               
               
               Cow position:chr5:48819334-48819517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:132-317
               
               
               Cow position:chr5:59958237-59958411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:132-322
               
               
               Cow position:chr5:22957471-22957650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:132-324
               
               
               Cow position:chr5:15770394-15770202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 174

               
               
               Conread position:132-329
               
               
               Cow position:chr5:31975580-31975789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:132-345
               
               
               Cow position:chr5:40637362-40637571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:133-275
               
               
               Cow position:chr5:50525587-50525723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:133-294
               
               
               Cow position:chr5:47888669-47888508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:133-298
               
               
               Cow position:chr5:5030505-5030665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:133-298
               
               
               Cow position:chr5:75116510-75116344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:133-320
               
               
               Cow position:chr5:56881405-56881593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):7, 182

               
               
               Conread position:134-317
               
               
               Cow position:chr5:26149097-26149280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):6, 104

               
               
               Conread position:134-329
               
               
               Cow position:chr5:24108996-24108800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:136-298
               
               
               Cow position:chr5:46479176-46479021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:136-311
               
               
               Cow position:chr5:37919797-37919621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:138-294
               
               
               Cow position:chr5:43611766-43611921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:138-295
               
               
               Cow position:chr5:718218-718372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:138-298
               
               
               Cow position:chr5:55949611-55949452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:138-360
               
               
               Cow position:chr5:25446953-25447173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:139-232
               
               
               Cow position:chr5:63195151-63195058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:139-284
               
               
               Cow position:chr5:29261773-29261918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:139-294
               
               
               Cow position:chr5:30132795-30132644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:139-301
               
               
               Cow position:chr5:54712996-54712839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:139-326
               
               
               Cow position:chr5:56643136-56643319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:155
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):103, 79

               
               
               Conread position:139-331
               
               
               Cow position:chr5:12504721-12504536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:140-324
               
               
               Cow position:chr5:32975828-32976014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 132

               
               
               Conread position:140-330
               
               
               Cow position:chr5:58237380-58237196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:141-295
               
               
               Cow position:chr5:6245592-6245442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:142-296
               
               
               Cow position:chr5:54555118-54554961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:143-298
               
               
               Cow position:chr5:25450027-25450170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:143-321
               
               
               Cow position:chr5:12566470-12566294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:143-326
               
               
               Cow position:chr5:19626651-19626829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:144-317
               
               
               Cow position:chr5:55943642-55943476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:144-319
               
               
               Cow position:chr5:58487449-58487617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:146-294
               
               
               Cow position:chr5:71387283-71387421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:146-321
               
               
               Cow position:chr5:61593343-61593511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:147-334
               
               
               Cow position:chr5:56624440-56624252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:148-294
               
               
               Cow position:chr5:64162700-64162544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:149-294
               
               
               Cow position:chr5:57584955-57585098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:149-345
               
               
               Cow position:chr5:4728153-4728343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):173, 66

               
               
               Conread position:150-298
               
               
               Cow position:chr5:14419930-14419791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:150-328
               
               
               Cow position:chr5:28660310-28660485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:151-337
               
               
               Cow position:chr5:1178035-1178214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:152-335
               
               
               Cow position:chr5:3627095-3626919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):136, 37

               
               
               Conread position:154-312
               
               
               Cow position:chr5:44868441-44868595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:156-298
               
               
               Cow position:chr5:74049910-74050050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:156-317
               
               
               Cow position:chr5:14000731-14000883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:156-326
               
               
               Cow position:chr5:75712052-75711882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):157, 38

               
               
               Conread position:157-291
               
               
               Cow position:chr5:53270577-53270710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:158-293
               
               
               Cow position:chr5:37572470-37572335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:160-313
               
               
               Cow position:chr5:22210982-22210834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):136, 55

               
               
               Conread position:161-298
               
               
               Cow position:chr5:41639505-41639368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-323
               
               
               Cow position:chr5:52153018-52152857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:163-324
               
               
               Cow position:chr5:52125302-52125141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):135, 96

               
               
               Conread position:167-311
               
               
               Cow position:chr5:34193236-34193378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:171-295
               
               
               Cow position:chr5:50703948-50703824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-298
               
               
               Cow position:chr5:52032206-52032082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:173-324
               
               
               Cow position:chr5:43434901-43434749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:174-302
               
               
               Cow position:chr5:59517153-59517028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:174-308
               
               
               Cow position:chr5:40740225-40740090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:174-317
               
               
               Cow position:chr5:62543943-62544079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:175-298
               
               
               Cow position:chr5:74690149-74690026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:175-323
               
               
               Cow position:chr5:56428469-56428320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:177-319
               
               
               Cow position:chr5:72867157-72867300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:179-331
               
               
               Cow position:chr5:32672726-32672572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:180-321
               
               
               Cow position:chr5:45337311-45337170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):135, 19

               
               
               Conread position:182-330
               
               
               Cow position:chr5:32086914-32086765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:183-323
               
               
               Cow position:chr5:13471221-13471359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:185-319
               
               
               Cow position:chr5:17254109-17253983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:190-317
               
               
               Cow position:chr5:56578819-56578946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-320
               
               
               Cow position:chr5:41757734-41757861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:203-327
               
               
               Cow position:chr5:17644217-17644088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:308-593
               
               
               Cow position:chr5:1643268-1643560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:346-532
               
               
               Cow position:chr5:16101200-16101016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:366-559
               
               
               Cow position:chr5:4353158-4353351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:372-687
               
               
               Cow position:chr5:10097493-10097164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):6, 291

               
               
               Conread position:372-689
               
               
               Cow position:chr5:54695242-54694903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):6, 137

               
               
               Conread position:372-690
               
               
               Cow position:chr5:7809898-7809576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 137

               
               
               Conread position:372-691
               
               
               Cow position:chr5:27655311-27655651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):6, 24

               
               
               Conread position:372-692
               
               
               Cow position:chr5:24219700-24220048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 137

               
               
               Conread position:374-691
               
               
               Cow position:chr5:40791408-40791742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):160, 65

               
               
               Conread position:376-579
               
               
               Cow position:chr5:8997463-8997248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:376-696
               
               
               Cow position:chr5:22554698-22555038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):156, 132

               
               
               Conread position:376-696
               
               
               Cow position:chr5:42043464-42043801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):156, 26

               
               
               Conread position:377-559
               
               
               Cow position:chr5:10773538-10773354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):148, 131

               
               
               Conread position:377-673
               
               
               Cow position:chr5:25901896-25901583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):155, 77

               
               
               Conread position:377-691
               
               
               Cow position:chr5:4755161-4754826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):148, 24

               
               
               Conread position:377-691
               
               
               Cow position:chr5:6615727-6615391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):155, 131

               
               
               Conread position:377-691
               
               
               Cow position:chr5:72856439-72856776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):155, 129

               
               
               Conread position:383-522
               
               
               Cow position:chr5:58141671-58141533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:383-658
               
               
               Cow position:chr5:39245711-39245417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 127

               
               
               Conread position:383-684
               
               
               Cow position:chr5:31916220-31916535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):156, 48

               
               
               Conread position:383-691
               
               
               Cow position:chr5:9003539-9003208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):156, 125

               
               
               Conread position:383-691
               
               
               Cow position:chr5:32365338-32365631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):189, 11

               
               
               Conread position:386-691
               
               
               Cow position:chr5:52606047-52605721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):67, 121

               
               
               Conread position:387-593
               
               
               Cow position:chr5:64010279-64010069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:388-504
               
               
               Cow position:chr5:43381906-43382022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:388-527
               
               
               Cow position:chr5:57832580-57832439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:388-532
               
               
               Cow position:chr5:23846399-23846256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:388-584
               
               
               Cow position:chr5:57928795-57928592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 84

               
               
               Conread position:388-591
               
               
               Cow position:chr5:58013230-58013017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):71, 125

               
               
               Conread position:388-593
               
               
               Cow position:chr5:28948166-28947952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:388-593
               
               
               Cow position:chr5:32165338-32165130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 139

               
               
               Conread position:388-593
               
               
               Cow position:chr5:34299447-34299657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:388-593
               
               
               Cow position:chr5:41357284-41357071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:388-593
               
               
               Cow position:chr5:46003073-46002861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):145, 120

               
               
               Conread position:388-598
               
               
               Cow position:chr5:10513697-10513480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-598
               
               
               Cow position:chr5:26076623-26076408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):141, 56

               
               
               Conread position:388-598
               
               
               Cow position:chr5:26512081-26511864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-598
               
               
               Cow position:chr5:31284672-31284889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-598
               
               
               Cow position:chr5:32775389-32775606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-598
               
               
               Cow position:chr5:50688389-50688606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-598
               
               
               Cow position:chr5:74036094-74036311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-601
               
               
               Cow position:chr5:31134420-31134200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-654
               
               
               Cow position:chr5:58000264-58000547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):100, 93

               
               
               Conread position:388-660
               
               
               Cow position:chr5:27490540-27490811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):138, 218

               
               
               Conread position:388-664
               
               
               Cow position:chr5:13808097-13807803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):144, 118

               
               
               Conread position:388-665
               
               
               Cow position:chr5:56932241-56931942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:388-684
               
               
               Cow position:chr5:42507336-42507654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-687
               
               
               Cow position:chr5:3628231-3627915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):145, 92

               
               
               Conread position:388-687
               
               
               Cow position:chr5:48534437-48534754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):146, 21

               
               
               Conread position:388-687
               
               
               Cow position:chr5:59064021-59064342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-688
               
               
               Cow position:chr5:60571-60247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 122

               
               
               Conread position:388-688
               
               
               Cow position:chr5:4387761-4388082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):151, 119

               
               
               Conread position:388-688
               
               
               Cow position:chr5:30844405-30844728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):151, 128

               
               
               Conread position:388-688
               
               
               Cow position:chr5:31120630-31120307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-688
               
               
               Cow position:chr5:50604755-50604450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):167, 95

               
               
               Conread position:388-689
               
               
               Cow position:chr5:51166730-51166408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):141, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:443734-443407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:388-691
               
               
               Cow position:chr5:1641215-1640889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:388-691
               
               
               Cow position:chr5:2976362-2976688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:3970099-3970427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):85, 122

               
               
               Conread position:388-691
               
               
               Cow position:chr5:4434928-4434602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:4963802-4963478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):137, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:5105801-5106127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:5925384-5925057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:388-691
               
               
               Cow position:chr5:6772144-6772470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:11153882-11153557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:11632409-11632083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):144, 122

               
               
               Conread position:388-691
               
               
               Cow position:chr5:12133179-12133499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):144, 23

               
               
               Conread position:388-691
               
               
               Cow position:chr5:12729561-12729237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):146, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:14543725-14543398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:388-691
               
               
               Cow position:chr5:15361740-15362067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:388-691
               
               
               Cow position:chr5:18119902-18119576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):144, 118

               
               
               Conread position:388-691
               
               
               Cow position:chr5:26404318-26404013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):145, 18

               
               
               Conread position:388-691
               
               
               Cow position:chr5:27196503-27196177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):139, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:29634005-29634331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:31750931-31751246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):144, 128

               
               
               Conread position:388-691
               
               
               Cow position:chr5:37084297-37083971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):137, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:37610365-37610040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):146, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:38661908-38662234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):151, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:41066601-41066927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):137, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:46666650-46666976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):151, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:47470957-47471282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:47697618-47697294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:388-691
               
               
               Cow position:chr5:51745799-51746125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:52823630-52823304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):146, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:54361875-54362200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):141, 96

               
               
               Conread position:388-691
               
               
               Cow position:chr5:54721235-54721557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):151, 104

               
               
               Conread position:388-691
               
               
               Cow position:chr5:54928343-54928017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):144, 118

               
               
               Conread position:388-691
               
               
               Cow position:chr5:54930671-54930345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):144, 118

               
               
               Conread position:388-691
               
               
               Cow position:chr5:57336837-57336511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):147, 120

               
               
               Conread position:388-691
               
               
               Cow position:chr5:58191497-58191819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):75, 55

               
               
               Conread position:388-691
               
               
               Cow position:chr5:58198587-58198912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):144, 96

               
               
               Conread position:388-691
               
               
               Cow position:chr5:59145951-59146279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:388-692
               
               
               Cow position:chr5:34472597-34472273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):70, 121

               
               
               Conread position:388-692
               
               
               Cow position:chr5:34525984-34526302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):65, 125

               
               
               Conread position:388-693
               
               
               Cow position:chr5:32965486-32965162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):143, 120

               
               
               Conread position:388-693
               
               
               Cow position:chr5:45180516-45180184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 124

               
               
               Conread position:388-696
               
               
               Cow position:chr5:445096-445424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):144, 52

               
               
               Conread position:388-696
               
               
               Cow position:chr5:23957750-23957419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-696
               
               
               Cow position:chr5:32953903-32954234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):144, 120

               
               
               Conread position:388-696
               
               
               Cow position:chr5:49521296-49521617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):163, 17

               
               
               Conread position:389-523
               
               
               Cow position:chr5:73486345-73486212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:389-584
               
               
               Cow position:chr5:3252559-3252364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):162, 74

               
               
               Conread position:389-588
               
               
               Cow position:chr5:38737375-38737577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:389-590
               
               
               Cow position:chr5:4349419-4349209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:389-590
               
               
               Cow position:chr5:57124088-57124290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):100, 90

               
               
               Conread position:389-593
               
               
               Cow position:chr5:5859536-5859747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):143, 123

               
               
               Conread position:389-593
               
               
               Cow position:chr5:27549882-27549671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):150, 119

               
               
               Conread position:389-593
               
               
               Cow position:chr5:40347703-40347492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):143, 119

               
               
               Conread position:389-593
               
               
               Cow position:chr5:47342291-47342502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):150, 117

               
               
               Conread position:389-593
               
               
               Cow position:chr5:73443980-73444191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):143, 119

               
               
               Conread position:389-664
               
               
               Cow position:chr5:35207193-35206901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):143, 34

               
               
               Conread position:389-680
               
               
               Cow position:chr5:27178225-27178543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):143, 119

               
               
               Conread position:389-683
               
               
               Cow position:chr5:30581914-30582229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):105, 137

               
               
               Conread position:389-687
               
               
               Cow position:chr5:64845680-64845363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):144, 74

               
               
               Conread position:389-688
               
               
               Cow position:chr5:25929112-25928799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 90

               
               
               Conread position:389-688
               
               
               Cow position:chr5:48805873-48805552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):143, 117

               
               
               Conread position:389-690
               
               
               Cow position:chr5:14877553-14877230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):143, 127

               
               
               Conread position:389-691
               
               
               Cow position:chr5:8177686-8178010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):145, 117

               
               
               Conread position:389-691
               
               
               Cow position:chr5:9091841-9091520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):144, 119

               
               
               Conread position:389-691
               
               
               Cow position:chr5:21522155-21521830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):143, 119

               
               
               Conread position:389-691
               
               
               Cow position:chr5:29826946-29827270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):143, 74

               
               
               Conread position:389-691
               
               
               Cow position:chr5:30156936-30157262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):94, 120

               
               
               Conread position:389-691
               
               
               Cow position:chr5:41952496-41952172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):76, 140

               
               
               Conread position:389-691
               
               
               Cow position:chr5:44709802-44709480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):143, 117

               
               
               Conread position:389-691
               
               
               Cow position:chr5:47560979-47560659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):143, 112

               
               
               Conread position:389-691
               
               
               Cow position:chr5:48225996-48225676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 120

               
               
               Conread position:389-691
               
               
               Cow position:chr5:54786529-54786206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):143, 65

               
               
               Conread position:389-692
               
               
               Cow position:chr5:39448854-39448531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):124, 95

               
               
               Conread position:389-695
               
               
               Cow position:chr5:18558825-18558497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):143, 117

               
               
               Conread position:389-696
               
               
               Cow position:chr5:413126-412802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):143, 64

               
               
               Conread position:389-696
               
               
               Cow position:chr5:2917043-2917371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):144, 93

               
               
               Conread position:389-696
               
               
               Cow position:chr5:7141523-7141203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:389-696
               
               
               Cow position:chr5:7395836-7396156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):162, 84

               
               
               Conread position:389-696
               
               
               Cow position:chr5:10921419-10921752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:389-696
               
               
               Cow position:chr5:14637001-14636671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):150, 117

               
               
               Conread position:389-696
               
               
               Cow position:chr5:18249636-18249966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):150, 117

               
               
               Conread position:389-696
               
               
               Cow position:chr5:19979338-19979007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):145, 117

               
               
               Conread position:389-696
               
               
               Cow position:chr5:24101228-24101557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):140, 117

               
               
               Conread position:389-696
               
               
               Cow position:chr5:27690575-27690901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 46

               
               
               Conread position:389-696
               
               
               Cow position:chr5:32755866-32755537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):150, 117

               
               
               Conread position:389-696
               
               
               Cow position:chr5:49117773-49117444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:389-696
               
               
               Cow position:chr5:54622201-54622527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):149, 116

               
               
               Conread position:389-696
               
               
               Cow position:chr5:57920503-57920828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):144, 119

               
               
               Conread position:389-696
               
               
               Cow position:chr5:67653909-67654235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):135, 79

               
               
               Conread position:390-569
               
               
               Cow position:chr5:40933015-40933202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:390-593
               
               
               Cow position:chr5:24298592-24298801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):144, 116

               
               
               Conread position:390-593
               
               
               Cow position:chr5:58771291-58771081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):144, 116

               
               
               Conread position:390-597
               
               
               Cow position:chr5:1339345-1339130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:390-608
               
               
               Cow position:chr5:24644291-24644067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:390-680
               
               
               Cow position:chr5:70401484-70401772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):142, 114

               
               
               Conread position:390-681
               
               
               Cow position:chr5:40897752-40897440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):149, 54

               
               
               Conread position:390-691
               
               
               Cow position:chr5:10066972-10066648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:390-691
               
               
               Cow position:chr5:10813786-10814110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):142, 118

               
               
               Conread position:390-691
               
               
               Cow position:chr5:29742978-29742655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):144, 116

               
               
               Conread position:390-691
               
               
               Cow position:chr5:37379662-37379989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:390-691
               
               
               Cow position:chr5:46779096-46779418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):135, 8

               
               
               Conread position:390-691
               
               
               Cow position:chr5:48409887-48409558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:390-693
               
               
               Cow position:chr5:10543092-10542766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):144, 118

               
               
               Conread position:390-696
               
               
               Cow position:chr5:3788806-3789135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):149, 116

               
               
               Conread position:390-696
               
               
               Cow position:chr5:7276412-7276740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):142, 116

               
               
               Conread position:390-696
               
               
               Cow position:chr5:12920977-12921305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):143, 116

               
               
               Conread position:390-696
               
               
               Cow position:chr5:37734952-37735283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:391-593
               
               
               Cow position:chr5:18704238-18704448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):136, 118

               
               
               Conread position:391-691
               
               
               Cow position:chr5:6585881-6585551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):142, 117

               
               
               Conread position:391-691
               
               
               Cow position:chr5:46686028-46685712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):161, 88

               
               
               Conread position:391-696
               
               
               Cow position:chr5:3501548-3501221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):141, 115

               
               
               Conread position:391-696
               
               
               Cow position:chr5:6152248-6151925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):141, 58

               
               
               Conread position:391-696
               
               
               Cow position:chr5:46735700-46735369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):55, 118

               
               
               Conread position:392-532
               
               
               Cow position:chr5:16910506-16910367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):101, 71

               
               
               Conread position:392-593
               
               
               Cow position:chr5:13531313-13531111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:392-689
               
               
               Cow position:chr5:42745355-42745675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:392-691
               
               
               Cow position:chr5:59770628-59770949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):140, 106

               
               
               Conread position:392-693
               
               
               Cow position:chr5:5716473-5716150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):140, 116

               
               
               Conread position:393-688
               
               
               Cow position:chr5:32089208-32088895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:393-696
               
               
               Cow position:chr5:23829588-23829268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):139, 113

               
               
               Conread position:394-617
               
               
               Cow position:chr5:34146345-34146118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):158, 25

               
               
               Conread position:397-596
               
               
               Cow position:chr5:12502587-12502382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):134, 111

               
               
               Conread position:397-691
               
               
               Cow position:chr5:28222643-28222338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 264

               
               
               Conread position:398-593
               
               
               Cow position:chr5:27005682-27005880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 52

               
               
               Conread position:398-593
               
               
               Cow position:chr5:49911331-49911528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):141, 34

               
               
               Conread position:398-688
               
               
               Cow position:chr5:34191509-34191823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):129, 110

               
               
               Conread position:398-691
               
               
               Cow position:chr5:42282757-42283072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):134, 110

               
               
               Conread position:398-691
               
               
               Cow position:chr5:55683460-55683770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):141, 17

               
               
               Conread position:399-626
               
               
               Cow position:chr5:73457760-73457992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):133, 111

               
               
               Conread position:399-688
               
               
               Cow position:chr5:76141479-76141775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:404-696
               
               
               Cow position:chr5:64779415-64779100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):128, 102

               
               
               Conread position:405-691
               
               
               Cow position:chr5:6456070-6455761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 103

               
               
               Conread position:406-593
               
               
               Cow position:chr5:46649677-46649873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:409-691
               
               
               Cow position:chr5:66909701-66910006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:409-696
               
               
               Cow position:chr5:62435723-62436033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:410-687
               
               
               Cow position:chr5:17646474-17646183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:410-692
               
               
               Cow position:chr5:58244197-58243893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):122, 96

               
               
               Conread position:414-691
               
               
               Cow position:chr5:30293921-30294221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):118, 102

               
               
               Conread position:415-693
               
               
               Cow position:chr5:18900939-18901238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 69

               
               
               Conread position:424-693
               
               
               Cow position:chr5:62377006-62377278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:449-683
               
               
               Cow position:chr5:34905361-34905611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:453-691
               
               
               Cow position:chr5:41229402-41229145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 57
Show alignments to all cow chromosomes.
Conread position:	7-230
Cow position:	chr5:56339080-56338861 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	162
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	64, 24
Conread position:	7-305
Cow position:	chr5:65967797-65967504 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	207
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	24, 9
Conread position:	9-285
Cow position:	chr5:66466259-66466526 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	184
Alignm E-value:	6e-23
Alignm gaps (pig, cow):	132, 7
Conread position:	11-189
Cow position:	chr5:9390487-9390676 (view UCSC Genome Browser custom track)
Alignm length:	190
Alignm identity:	144
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	52, 0
Conread position:	11-298
Cow position:	chr5:43923216-43922945 (view UCSC Genome Browser custom track)
Alignm length:	292
Alignm identity:	210
Alignm E-value:	8e-36
Alignm gaps (pig, cow):	53, 125
Conread position:	13-231
Cow position:	chr5:23168885-23168665 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	156
Alignm E-value:	5e-32
Alignm gaps (pig, cow):	74, 0
Conread position:	13-236
Cow position:	chr5:24175311-24175536 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	161
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	39, 99
Conread position:	13-314
Cow position:	chr5:63114533-63114225 (view UCSC Genome Browser custom track)
Alignm length:	309
Alignm identity:	204
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	31, 0
Conread position:	13-315
Cow position:	chr5:41303145-41302832 (view UCSC Genome Browser custom track)
Alignm length:	314
Alignm identity:	198
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	63, 0
Conread position:	14-123
Cow position:	chr5:24485492-24485382 (view UCSC Genome Browser custom track)
Alignm length:	111
Alignm identity:	90
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	59, 0
Conread position:	14-129
Cow position:	chr5:32956151-32956036 (view UCSC Genome Browser custom track)
Alignm length:	116
Alignm identity:	90
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	0, 0
Conread position:	14-136
Cow position:	chr5:21964232-21964354 (view UCSC Genome Browser custom track)
Alignm length:	124
Alignm identity:	102
Alignm E-value:	9e-27
Alignm gaps (pig, cow):	14, 50
Conread position:	14-137
Cow position:	chr5:29980042-29979916 (view UCSC Genome Browser custom track)
Alignm length:	127
Alignm identity:	102
Alignm E-value:	7e-25
Alignm gaps (pig, cow):	49, 0
Conread position:	14-158
Cow position:	chr5:41951149-41951008 (view UCSC Genome Browser custom track)
Alignm length:	146
Alignm identity:	113
Alignm E-value:	7e-25
Alignm gaps (pig, cow):	125, 49
Conread position:	14-167
Cow position:	chr5:40039825-40039669 (view UCSC Genome Browser custom track)
Alignm length:	160
Alignm identity:	120
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	60, 44
Conread position:	14-169
Cow position:	chr5:34192846-34193005 (view UCSC Genome Browser custom track)
Alignm length:	162
Alignm identity:	126
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	52, 137
Conread position:	14-173
Cow position:	chr5:4617312-4617469 (view UCSC Genome Browser custom track)
Alignm length:	161
Alignm identity:	119
Alignm E-value:	7e-24
Alignm gaps (pig, cow):	101, 54
Conread position:	14-178
Cow position:	chr5:11965384-11965222 (view UCSC Genome Browser custom track)
Alignm length:	168
Alignm identity:	127
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	31, 14
Conread position:	14-186
Cow position:	chr5:55928886-55929060 (view UCSC Genome Browser custom track)
Alignm length:	176
Alignm identity:	139
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	56, 153
Conread position:	14-189
Cow position:	chr5:58793664-58793488 (view UCSC Genome Browser custom track)
Alignm length:	178
Alignm identity:	131
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	61, 44