Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056G03.3 |
| Conread position: | 740-905 |
| Cow position: | chr1:75504831-75504996 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 752-942 |
| Cow position: | chr1:81391173-81390971 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 173 |
| Conread position: | 754-931 |
| Cow position: | chr1:66445207-66445024 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 755-931 |
| Cow position: | chr1:771552-771718 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 757-934 |
| Cow position: | chr1:6731422-6731239 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 764-931 |
| Cow position: | chr1:71321770-71321938 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 764-976 |
| Cow position: | chr1:72422173-72422387 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 127 |
| Conread position: | 767-932 |
| Cow position: | chr1:81228106-81228272 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 54 |
| Conread position: | 768-931 |
| Cow position: | chr1:74929479-74929649 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 768-952 |
| Cow position: | chr1:74083956-74084151 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 24, 189 |
| Conread position: | 769-936 |
| Cow position: | chr1:45099984-45099817 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 93, 104 |
| Conread position: | 772-924 |
| Cow position: | chr1:25021850-25022006 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 7, 116 |
| Conread position: | 772-931 |
| Cow position: | chr1:628193-628028 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 776-926 |
| Cow position: | chr1:102500891-102501050 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 21, 128 |
| Conread position: | 777-978 |
| Cow position: | chr1:54258791-54258586 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 116 |
| Conread position: | 779-936 |
| Cow position: | chr1:91065941-91066095 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 780-931 |
| Cow position: | chr1:6759827-6759973 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 780-931 |
| Cow position: | chr1:90267941-90267782 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 88, 112 |
| Conread position: | 780-932 |
| Cow position: | chr1:89146655-89146814 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 781-906 |
| Cow position: | chr1:16060793-16060917 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 781-925 |
| Cow position: | chr1:51626581-51626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 781-925 |
| Cow position: | chr1:64706118-64705967 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 118 |
| Conread position: | 781-931 |
| Cow position: | chr1:1496311-1496470 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 781-931 |
| Cow position: | chr1:17056206-17056053 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 120 |
| Conread position: | 781-931 |
| Cow position: | chr1:55230189-55230038 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 781-931 |
| Cow position: | chr1:55260018-55260174 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 782-931 |
| Cow position: | chr1:22828357-22828508 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 782-931 |
| Cow position: | chr1:43379145-43379300 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 782-931 |
| Cow position: | chr1:54156519-54156673 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 782-931 |
| Cow position: | chr1:75227110-75227258 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 783-907 |
| Cow position: | chr1:8778123-8778249 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 783-925 |
| Cow position: | chr1:36887115-36887259 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 783-925 |
| Cow position: | chr1:47658562-47658413 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 783-931 |
| Cow position: | chr1:62181924-62182068 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 783-932 |
| Cow position: | chr1:64421750-64421602 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 40 |
| Conread position: | 784-911 |
| Cow position: | chr1:89437515-89437643 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 101 |
| Conread position: | 784-931 |
| Cow position: | chr1:20537415-20537267 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 79, 101 |
| Conread position: | 784-931 |
| Cow position: | chr1:22824122-22823967 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 78, 108 |
| Conread position: | 784-936 |
| Cow position: | chr1:55428740-55428899 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 107 |
| Conread position: | 784-964 |
| Cow position: | chr1:43352439-43352632 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 785-889 |
| Cow position: | chr1:34767505-34767402 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 785-925 |
| Cow position: | chr1:40303759-40303619 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 785-931 |
| Cow position: | chr1:95153086-95152933 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 106 |
| Conread position: | 787-921 |
| Cow position: | chr1:41022626-41022491 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 75, 96 |
| Conread position: | 787-928 |
| Cow position: | chr1:71664684-71664833 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 75, 103 |
| Conread position: | 787-929 |
| Cow position: | chr1:83677115-83677260 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 787-931 |
| Cow position: | chr1:63994346-63994493 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 85, 9 |
| Conread position: | 789-931 |
| Cow position: | chr1:74919767-74919917 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 789-932 |
| Cow position: | chr1:67674400-67674542 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 789-937 |
| Cow position: | chr1:58420406-58420257 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 791-895 |
| Cow position: | chr1:43734400-43734503 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 791-927 |
| Cow position: | chr1:34952444-34952309 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 791-931 |
| Cow position: | chr1:20202506-20202365 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 53 |
| Conread position: | 791-936 |
| Cow position: | chr1:32014398-32014253 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 793-925 |
| Cow position: | chr1:51860360-51860493 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 92 |
| Conread position: | 793-931 |
| Cow position: | chr1:38754121-38753985 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 80 |
| Conread position: | 793-931 |
| Cow position: | chr1:81858697-81858838 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 70, 94 |
| Conread position: | 805-931 |
| Cow position: | chr1:22394481-22394613 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.