Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056G03.3 |
| Conread position: | 2-384 |
| Cow position: | chr10:26088161-26088534 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 177 |
| Conread position: | 452-782 |
| Cow position: | chr10:26088686-26089000 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 54 |
| Conread position: | 731-931 |
| Cow position: | chr10:26750593-26750387 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 752-925 |
| Cow position: | chr10:28223434-28223251 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 142 |
| Conread position: | 754-925 |
| Cow position: | chr10:17518633-17518810 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 754-962 |
| Cow position: | chr10:69934568-69934777 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 764-932 |
| Cow position: | chr10:35605247-35605081 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 53 |
| Conread position: | 765-931 |
| Cow position: | chr10:19394362-19394541 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 766-963 |
| Cow position: | chr10:45378802-45379006 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 770-936 |
| Cow position: | chr10:34705476-34705304 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 776-932 |
| Cow position: | chr10:49142314-49142476 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 777-931 |
| Cow position: | chr10:16830193-16830354 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 780-964 |
| Cow position: | chr10:50050085-50049907 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 781-870 |
| Cow position: | chr10:16524139-16524229 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 79 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 781-920 |
| Cow position: | chr10:36945613-36945759 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 781-928 |
| Cow position: | chr10:36490204-36490055 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 105 |
| Conread position: | 781-931 |
| Cow position: | chr10:10153191-10153042 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 81, 104 |
| Conread position: | 781-931 |
| Cow position: | chr10:18849709-18849555 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 107 |
| Conread position: | 781-931 |
| Cow position: | chr10:22980793-22980946 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 781-932 |
| Cow position: | chr10:38800026-38799869 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 32 |
| Conread position: | 781-936 |
| Cow position: | chr10:2328377-2328214 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 781-976 |
| Cow position: | chr10:44730288-44730487 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 160 |
| Conread position: | 782-925 |
| Cow position: | chr10:24753321-24753184 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 782-931 |
| Cow position: | chr10:42115541-42115392 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 783-919 |
| Cow position: | chr10:31528151-31528014 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 79, 102 |
| Conread position: | 783-930 |
| Cow position: | chr10:30452015-30451872 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 783-931 |
| Cow position: | chr10:15601994-15602149 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 89, 108 |
| Conread position: | 783-932 |
| Cow position: | chr10:48377211-48377367 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 89, 108 |
| Conread position: | 783-936 |
| Cow position: | chr10:31718197-31718356 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 783-943 |
| Cow position: | chr10:50182868-50183032 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 783-978 |
| Cow position: | chr10:16598875-16598678 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 107 |
| Conread position: | 784-907 |
| Cow position: | chr10:35820155-35820281 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 784-918 |
| Cow position: | chr10:49686925-49686790 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 784-921 |
| Cow position: | chr10:63484820-63484682 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 101 |
| Conread position: | 784-928 |
| Cow position: | chr10:38370269-38370419 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 784-930 |
| Cow position: | chr10:19503097-19503250 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 784-931 |
| Cow position: | chr10:9656342-9656490 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 784-931 |
| Cow position: | chr10:37014819-37014666 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 51 |
| Conread position: | 784-931 |
| Cow position: | chr10:56996528-56996676 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 99 |
| Conread position: | 784-936 |
| Cow position: | chr10:41132445-41132292 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 109 |
| Conread position: | 785-931 |
| Cow position: | chr10:9959400-9959248 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 86, 113 |
| Conread position: | 785-931 |
| Cow position: | chr10:44771828-44771682 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 12 |
| Conread position: | 786-914 |
| Cow position: | chr10:35858847-35858722 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 786-929 |
| Cow position: | chr10:24312711-24312854 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 82, 111 |
| Conread position: | 786-931 |
| Cow position: | chr10:22960999-22961140 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 82 |
| Conread position: | 787-919 |
| Cow position: | chr10:25342762-25342629 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 75, 98 |
| Conread position: | 787-931 |
| Cow position: | chr10:56303754-56303603 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 787-951 |
| Cow position: | chr10:35248960-35249131 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 166 |
| Conread position: | 787-954 |
| Cow position: | chr10:11060352-11060522 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 75, 89 |
| Conread position: | 787-962 |
| Cow position: | chr10:40738170-40737993 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 788-931 |
| Cow position: | chr10:64285620-64285762 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 789-891 |
| Cow position: | chr10:40164201-40164305 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 789-925 |
| Cow position: | chr10:23493511-23493648 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 789-930 |
| Cow position: | chr10:1976141-1976284 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 11 |
| Conread position: | 793-931 |
| Cow position: | chr10:17844939-17844799 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 796-931 |
| Cow position: | chr10:58148999-58149137 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 70, 91 |
| Conread position: | 796-936 |
| Cow position: | chr10:33914897-33915038 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 89 |
| Conread position: | 957-1202 |
| Cow position: | chr10:26089024-26089263 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 10 |
Show alignments to all cow chromosomes.