Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056G03.3 |
| Conread position: | 742-937 |
| Cow position: | chr3:71238372-71238178 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 120, 30 |
| Conread position: | 744-887 |
| Cow position: | chr3:53513779-53513924 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 48, 130 |
| Conread position: | 751-929 |
| Cow position: | chr3:56754317-56754501 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 178 |
| Conread position: | 756-931 |
| Cow position: | chr3:55730257-55730437 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 11 |
| Conread position: | 763-931 |
| Cow position: | chr3:8147320-8147494 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 763-931 |
| Cow position: | chr3:15859178-15859347 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 763-931 |
| Cow position: | chr3:83934926-83934757 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 99, 17 |
| Conread position: | 764-934 |
| Cow position: | chr3:83491283-83491115 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 100 |
| Conread position: | 768-885 |
| Cow position: | chr3:33460400-33460517 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 768-931 |
| Cow position: | chr3:58527576-58527414 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 769-884 |
| Cow position: | chr3:29386067-29385950 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 774-932 |
| Cow position: | chr3:35075065-35074909 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 85 |
| Conread position: | 776-936 |
| Cow position: | chr3:635371-635204 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 776-953 |
| Cow position: | chr3:79272385-79272567 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 109 |
| Conread position: | 779-905 |
| Cow position: | chr3:53249671-53249546 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 11 |
| Conread position: | 780-925 |
| Cow position: | chr3:28902577-28902721 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 781-919 |
| Cow position: | chr3:58562887-58562742 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 781-926 |
| Cow position: | chr3:15153875-15153728 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 781-931 |
| Cow position: | chr3:1011678-1011520 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 781-931 |
| Cow position: | chr3:15973758-15973598 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 113 |
| Conread position: | 781-931 |
| Cow position: | chr3:20802454-20802599 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 781-931 |
| Cow position: | chr3:20841693-20841841 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 781-931 |
| Cow position: | chr3:24468198-24468353 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 45 |
| Conread position: | 781-931 |
| Cow position: | chr3:40212849-40213002 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 104 |
| Conread position: | 781-931 |
| Cow position: | chr3:43388939-43389096 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 781-931 |
| Cow position: | chr3:51608996-51609154 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 781-931 |
| Cow position: | chr3:53604558-53604714 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 781-934 |
| Cow position: | chr3:4120184-4120337 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 781-934 |
| Cow position: | chr3:78071605-78071762 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 115 |
| Conread position: | 781-965 |
| Cow position: | chr3:72027825-72027633 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 110 |
| Conread position: | 781-967 |
| Cow position: | chr3:13380092-13380275 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 112 |
| Conread position: | 781-1009 |
| Cow position: | chr3:51150316-51150080 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 32 |
| Conread position: | 782-921 |
| Cow position: | chr3:76056103-76056243 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 80, 103 |
| Conread position: | 782-925 |
| Cow position: | chr3:14517895-14518041 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 782-931 |
| Cow position: | chr3:986200-986046 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 80, 109 |
| Conread position: | 782-931 |
| Cow position: | chr3:60371169-60371014 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 783-921 |
| Cow position: | chr3:59885715-59885580 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 783-931 |
| Cow position: | chr3:76300958-76300803 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 107 |
| Conread position: | 783-934 |
| Cow position: | chr3:2016615-2016464 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 784-921 |
| Cow position: | chr3:57553715-57553851 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 80 |
| Conread position: | 784-931 |
| Cow position: | chr3:30180266-30180118 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 109 |
| Conread position: | 784-931 |
| Cow position: | chr3:48253062-48252917 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 784-931 |
| Cow position: | chr3:68587202-68587054 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 109 |
| Conread position: | 784-976 |
| Cow position: | chr3:59317883-59317693 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 91 |
| Conread position: | 785-930 |
| Cow position: | chr3:18699926-18700078 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 786-958 |
| Cow position: | chr3:22903576-22903748 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 787-925 |
| Cow position: | chr3:69849118-69849255 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 91 |
| Conread position: | 787-931 |
| Cow position: | chr3:76168450-76168600 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 787-932 |
| Cow position: | chr3:35883752-35883904 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 787-955 |
| Cow position: | chr3:59681727-59681893 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 788-921 |
| Cow position: | chr3:27286694-27286560 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 97 |
| Conread position: | 788-930 |
| Cow position: | chr3:26792633-26792495 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 789-929 |
| Cow position: | chr3:58101853-58101711 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 789-930 |
| Cow position: | chr3:23920248-23920396 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 789-931 |
| Cow position: | chr3:17134509-17134366 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 789-931 |
| Cow position: | chr3:33252714-33252857 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 789-931 |
| Cow position: | chr3:39996716-39996856 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 791-931 |
| Cow position: | chr3:18687078-18686938 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 93 |
| Conread position: | 791-931 |
| Cow position: | chr3:49787732-49787590 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 791-976 |
| Cow position: | chr3:2648332-2648519 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 148 |
| Conread position: | 792-925 |
| Cow position: | chr3:20996827-20996959 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 86 |
| Conread position: | 792-931 |
| Cow position: | chr3:61023846-61023991 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 792-931 |
| Cow position: | chr3:68303493-68303346 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 70, 100 |
| Conread position: | 794-931 |
| Cow position: | chr3:2538410-2538272 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 803-931 |
| Cow position: | chr3:62370221-62370086 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.