Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056G03.3 |
| Conread position: | 763-924 |
| Cow position: | chr5:1178207-1178043 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 123, 105 |
| Conread position: | 768-915 |
| Cow position: | chr5:41935401-41935559 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 125 |
| Conread position: | 772-931 |
| Cow position: | chr5:71387448-71387289 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 780-894 |
| Cow position: | chr5:22957640-22957530 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 780-895 |
| Cow position: | chr5:17253990-17254106 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 105 |
| Conread position: | 780-931 |
| Cow position: | chr5:55783722-55783881 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 781-915 |
| Cow position: | chr5:33834277-33834138 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 781-925 |
| Cow position: | chr5:44196692-44196841 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 781-930 |
| Cow position: | chr5:69427226-69427370 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 781-931 |
| Cow position: | chr5:33560500-33560652 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 781-931 |
| Cow position: | chr5:57062291-57062447 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 781-931 |
| Cow position: | chr5:59958404-59958256 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 781-934 |
| Cow position: | chr5:72903005-72903157 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 781-963 |
| Cow position: | chr5:43815579-43815768 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 781-964 |
| Cow position: | chr5:18289357-18289174 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 782-907 |
| Cow position: | chr5:16937798-16937923 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 97, 102 |
| Conread position: | 782-921 |
| Cow position: | chr5:50723284-50723138 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 782-930 |
| Cow position: | chr5:30562163-30562015 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 782-931 |
| Cow position: | chr5:22102789-22102640 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 783-900 |
| Cow position: | chr5:21374880-21375001 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 783-931 |
| Cow position: | chr5:25450180-25450036 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 783-931 |
| Cow position: | chr5:62996194-62996039 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 108 |
| Conread position: | 784-931 |
| Cow position: | chr5:5009874-5010018 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 784-931 |
| Cow position: | chr5:26149269-26149116 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 67 |
| Conread position: | 784-931 |
| Cow position: | chr5:64140772-64140620 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 784-963 |
| Cow position: | chr5:50101144-50101326 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 99 |
| Conread position: | 785-931 |
| Cow position: | chr5:52853199-52853053 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 11 |
| Conread position: | 786-931 |
| Cow position: | chr5:55965660-55965812 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 787-931 |
| Cow position: | chr5:31648646-31648501 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 106 |
| Conread position: | 787-931 |
| Cow position: | chr5:58487604-58487457 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 789-931 |
| Cow position: | chr5:12902148-12901999 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 789-931 |
| Cow position: | chr5:55949449-55949597 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 789-931 |
| Cow position: | chr5:56327497-56327637 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 789-931 |
| Cow position: | chr5:57399022-57399171 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 102 |
| Conread position: | 790-954 |
| Cow position: | chr5:12562532-12562698 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 95 |
| Conread position: | 791-924 |
| Cow position: | chr5:14419790-14419921 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 53 |
| Conread position: | 791-927 |
| Cow position: | chr5:56563975-56563839 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 131, 86 |
| Conread position: | 791-931 |
| Cow position: | chr5:45854728-45854579 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 71, 102 |
| Conread position: | 792-931 |
| Cow position: | chr5:55943492-55943634 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 793-931 |
| Cow position: | chr5:57447439-57447584 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 98 |
| Conread position: | 799-931 |
| Cow position: | chr5:38040349-38040482 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 86 |
Show alignments to all cow chromosomes.